Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G052000.1 | Wheat | mitochondrion | 75.93 | 96.95 |
| TraesCS4D01G052200.1 | Wheat | plastid | 96.19 | 95.86 |
| HORVU4Hr1G008610.2 | Barley | mitochondrion | 94.6 | 94.6 |
| HORVU0Hr1G023250.4 | Barley | cytosol | 27.61 | 89.66 |
| HORVU1Hr1G068750.7 | Barley | cytosol | 27.43 | 87.32 |
| OQU91090 | Sorghum | nucleus | 84.69 | 84.62 |
| Os03t0719800-01 | Rice | plastid | 84.34 | 84.49 |
| Zm00001d033799_P001 | Maize | cytosol | 84.42 | 84.35 |
| Zm00001d013402_P005 | Maize | nucleus | 83.81 | 83.73 |
| Zm00001d008542_P001 | Maize | cytosol | 16.46 | 76.86 |
| OQU91089 | Sorghum | cytosol | 12.12 | 76.54 |
| GSMUA_Achr8P06130_001 | Banana | cytosol, mitochondrion | 64.51 | 67.81 |
| VIT_14s0060g00100.t01 | Wine grape | nucleus | 63.89 | 64.23 |
| KRG90417 | Soybean | nucleus | 62.48 | 62.87 |
| Solyc10g044670.1.1 | Tomato | extracellular | 62.39 | 62.78 |
| PGSC0003DMT400040772 | Potato | cytosol | 62.3 | 62.69 |
| CDY06362 | Canola | cytosol, plastid | 61.95 | 62.44 |
| Bra031672.1-P | Field mustard | cytosol, plastid | 61.68 | 62.18 |
| CDY22632 | Canola | cytosol, plastid | 61.59 | 61.98 |
| AT1G09570.3 | Thale cress | cytosol | 61.42 | 61.63 |
| GSMUA_Achr5P27310_001 | Banana | cytosol | 8.41 | 61.29 |
| KRG96653 | Soybean | nucleus | 61.06 | 61.06 |
| CDY50896 | Canola | endoplasmic reticulum, plastid, vacuole | 61.42 | 59.78 |
| KRH33709 | Soybean | endoplasmic reticulum, golgi, plastid | 62.48 | 59.28 |
| CDX93501 | Canola | cytosol | 61.5 | 57.82 |
| Bra020013.1-P | Field mustard | cytosol | 61.33 | 57.27 |
| KRH68382 | Soybean | endoplasmic reticulum, plastid, vacuole | 48.05 | 55.75 |
| TraesCS5A01G391300.2 | Wheat | cytosol, plastid | 52.21 | 50.69 |
| TraesCS4A01G122500.2 | Wheat | plastid | 47.96 | 46.48 |
Protein Annotations
| Gene3D:1.10.287.130 | MapMan:26.1.1.1 | Gene3D:3.30.450.20 | Gene3D:3.30.450.270 | Gene3D:3.30.450.40 | Gene3D:3.30.565.10 |
| InterPro:GAF | InterPro:GAF-like_dom_sf | GO:GO:0000155 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004871 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009584 | GO:GO:0009585 |
| GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009881 | GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016740 |
| GO:GO:0017006 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0038023 | GO:GO:0042803 | InterPro:HATPase_C |
| InterPro:HATPase_C_sf | InterPro:HisK_dim/P | InterPro:His_kinase_dom | InterPro:IPR000014 | InterPro:IPR005467 | InterPro:IPR016132 |
| InterPro:IPR029016 | InterPro:IPR036890 | InterPro:PAS | InterPro:PAS-like_dom_sf | InterPro:PAS_2 | InterPro:PAS_fold |
| PFAM:PF00360 | PFAM:PF00512 | PFAM:PF00989 | PFAM:PF01590 | PFAM:PF02518 | PFAM:PF08446 |
| PIRSF:PIRSF000084 | PRINTS:PR01033 | PFscan:PS50046 | PFscan:PS50109 | PFscan:PS50112 | PANTHER:PTHR43719 |
| PANTHER:PTHR43719:SF13 | InterPro:Phyto_chromo_attachment | InterPro:Phytochrome | InterPro:Phytochrome_A-E | InterPro:Phytochrome_cen-reg | SMART:SM00065 |
| SMART:SM00091 | SMART:SM00387 | SMART:SM00388 | SUPFAM:SSF55781 | SUPFAM:SSF55785 | SUPFAM:SSF55874 |
| TIGRFAMs:TIGR00229 | EnsemblPlantsGene:TraesCS4A01G262900 | EnsemblPlants:TraesCS4A01G262900.1 | TIGR:cd00075 | TIGR:cd00082 | TIGR:cd00130 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:575027251..575031340
Molecular Weight (calculated)
124888.0 Da
IEP (calculated)
5.603
GRAVY (calculated)
-0.094
Length
1130 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSSRAASSS SSRNRQSTQE RVLAQTTLDA ELNAEFEESS DSFDYSKLVE AQRDTPTVLQ EGRSEKVIAY LQHIQRGKMI QSFGCLLALD EKSFNVIAFS
0101: ENAPEMLTTV SHAVPSVDDP PRLDIGTNVR SLFTDQGAAA LHKALGFADV SLLNPILVQC KTSGKPFYAI VHRATGCLVV DFEPVNPTEF PATAAGALQS
0201: YKLAAKAISK IQALPGGSME LLCNTVVKEV FDLTGYDRVM AYKFHEDNHG EVFAEITKPG LEPYLGLHYP ATDIPQAARF LFMKNKVRLI CDVRARPIKV
0301: IEDEALPFDI SLCGSALRAA HSCHLQYMEN MNSIASLVMA VVVNENEEDD EVGSEQPAQQ QKKKILWGLI VCHHESPRYV PFPLRYACEF LAQVFAVHVN
0401: KEFEVQKQLR EKSILRMQTI LSDMLFKEAS PLTIVSGAPN IMDLIKCDGA ALLYGGKVWR LGTAPTESQI RDLALWLSEV HMDSTGLSTE SLHDAGYPGA
0501: SALGDTVCGM AVAKINSSDI LFWFRSPTAK EIRWGGAKND PSDMDDSRRM HPRLSFKAFL EVVKMKSLAW TDSEMDAIHS LQLILRGAVD GVVKPTGKAS
0601: LDEQIGDLKL DGLAELQAVT SEMVRLMETA TVPILAVDGN GLVNGWNQKA AELTGLRVDD AIGRHILTLV EESSVSVVQR MLYLALQGKE EKEVRFEVKT
0701: HGPKRDDGPV ILVVNACASR DLHDDVVGVC FVAQDMTVHK LVMDKFTRVE GDYMAIIHNP NPLIPPIFGA DESGWCCEWN AAMTKLTGWH REEVLDKMLL
0801: GEVFDSRNAS CLLKNKDAFV SLCVVINSAL AGEETEKAPF GFFDRSGKYT ECLLSVNRRQ NEGGLITGVF CFIHIPSHEL QQALQVQQAS EQKSLKRLKA
0901: FSYMRHAINN PLSGMLYSRK ALKNTDLNEE QMRQIHVADN CHHQLNKILA DLDQHNIMEK SSCLDLEMAE FVLQDVVVAA VSQVLIACQG KGIRVSCNLP
1001: ERFMKQLVYG DGVRLQQILS DFLSISVKFS PVGSSVEISA KATKNSIGEN LHLIDLELRI KHQGLGVPAE LMAQMFEEDE PQQSEEGLGL LVSRNLLRLM
1101: NGDVRHLREA GVSIFILTAE LACAPTAMEH
0101: ENAPEMLTTV SHAVPSVDDP PRLDIGTNVR SLFTDQGAAA LHKALGFADV SLLNPILVQC KTSGKPFYAI VHRATGCLVV DFEPVNPTEF PATAAGALQS
0201: YKLAAKAISK IQALPGGSME LLCNTVVKEV FDLTGYDRVM AYKFHEDNHG EVFAEITKPG LEPYLGLHYP ATDIPQAARF LFMKNKVRLI CDVRARPIKV
0301: IEDEALPFDI SLCGSALRAA HSCHLQYMEN MNSIASLVMA VVVNENEEDD EVGSEQPAQQ QKKKILWGLI VCHHESPRYV PFPLRYACEF LAQVFAVHVN
0401: KEFEVQKQLR EKSILRMQTI LSDMLFKEAS PLTIVSGAPN IMDLIKCDGA ALLYGGKVWR LGTAPTESQI RDLALWLSEV HMDSTGLSTE SLHDAGYPGA
0501: SALGDTVCGM AVAKINSSDI LFWFRSPTAK EIRWGGAKND PSDMDDSRRM HPRLSFKAFL EVVKMKSLAW TDSEMDAIHS LQLILRGAVD GVVKPTGKAS
0601: LDEQIGDLKL DGLAELQAVT SEMVRLMETA TVPILAVDGN GLVNGWNQKA AELTGLRVDD AIGRHILTLV EESSVSVVQR MLYLALQGKE EKEVRFEVKT
0701: HGPKRDDGPV ILVVNACASR DLHDDVVGVC FVAQDMTVHK LVMDKFTRVE GDYMAIIHNP NPLIPPIFGA DESGWCCEWN AAMTKLTGWH REEVLDKMLL
0801: GEVFDSRNAS CLLKNKDAFV SLCVVINSAL AGEETEKAPF GFFDRSGKYT ECLLSVNRRQ NEGGLITGVF CFIHIPSHEL QQALQVQQAS EQKSLKRLKA
0901: FSYMRHAINN PLSGMLYSRK ALKNTDLNEE QMRQIHVADN CHHQLNKILA DLDQHNIMEK SSCLDLEMAE FVLQDVVVAA VSQVLIACQG KGIRVSCNLP
1001: ERFMKQLVYG DGVRLQQILS DFLSISVKFS PVGSSVEISA KATKNSIGEN LHLIDLELRI KHQGLGVPAE LMAQMFEEDE PQQSEEGLGL LVSRNLLRLM
1101: NGDVRHLREA GVSIFILTAE LACAPTAMEH
0001: MEKKMSGSRP TQSSEGSRRS RHSARIIAQT TVDAKLHADF EESGSSFDYS TSVRVTGPVV ENQPPRSDKV TTTYLHHIQK GKLIQPFGCL LALDEKTFKV
0101: IAYSENASEL LTMASHAVPS VGEHPVLGIG TDIRSLFTAP SASALQKALG FGDVSLLNPI LVHCRTSAKP FYAIIHRVTG SIIIDFEPVK PYEVPMTAAG
0201: ALQSYKLAAK AITRLQSLPS GSMERLCDTM VQEVFELTGY DRVMAYKFHE DDHGEVVSEV TKPGLEPYLG LHYPATDIPQ AARFLFMKNK VRMIVDCNAK
0301: HARVLQDEKL SFDLTLCGST LRAPHSCHLQ YMANMDSIAS LVMAVVVNEE DGEGDAPDAT TQPQKRKRLW GLVVCHNTTP RFVPFPLRYA CEFLAQVFAI
0401: HVNKEVELDN QMVEKNILRT QTLLCDMLMR DAPLGIVSQS PNIMDLVKCD GAALLYKDKI WKLGTTPSEF HLQEIASWLC EYHMDSTGLS TDSLHDAGFP
0501: RALSLGDSVC GMAAVRISSK DMIFWFRSHT AGEVRWGGAK HDPDDRDDAR RMHPRSSFKA FLEVVKTRSL PWKDYEMDAI HSLQLILRNA FKDSETTDVN
0601: TKVIYSKLND LKIDGIQELE AVTSEMVRLI ETATVPILAV DSDGLVNGWN TKIAELTGLS VDEAIGKHFL TLVEDSSVEI VKRMLENALE GTEEQNVQFE
0701: IKTHLSRADA GPISLVVNAC ASRDLHENVV GVCFVAHDLT GQKTVMDKFT RIEGDYKAII QNPNPLIPPI FGTDEFGWCT EWNPAMSKLT GLKREEVIDK
0801: MLLGEVFGTQ KSCCRLKNQE AFVNLGIVLN NAVTSQDPEK VSFAFFTRGG KYVECLLCVS KKLDREGVVT GVFCFLQLAS HELQQALHVQ RLAERTAVKR
0901: LKALAYIKRQ IRNPLSGIMF TRKMIEGTEL GPEQRRILQT SALCQKQLSK ILDDSDLESI IEGCLDLEMK EFTLNEVLTA STSQVMMKSN GKSVRITNET
1001: GEEVMSDTLY GDSIRLQQVL ADFMLMAVNF TPSGGQLTVS ASLRKDQLGR SVHLANLEIR LTHTGAGIPE FLLNQMFGTE EDVSEEGLSL MVSRKLVKLM
1101: NGDVQYLRQA GKSSFIITAE LAAANK
0101: IAYSENASEL LTMASHAVPS VGEHPVLGIG TDIRSLFTAP SASALQKALG FGDVSLLNPI LVHCRTSAKP FYAIIHRVTG SIIIDFEPVK PYEVPMTAAG
0201: ALQSYKLAAK AITRLQSLPS GSMERLCDTM VQEVFELTGY DRVMAYKFHE DDHGEVVSEV TKPGLEPYLG LHYPATDIPQ AARFLFMKNK VRMIVDCNAK
0301: HARVLQDEKL SFDLTLCGST LRAPHSCHLQ YMANMDSIAS LVMAVVVNEE DGEGDAPDAT TQPQKRKRLW GLVVCHNTTP RFVPFPLRYA CEFLAQVFAI
0401: HVNKEVELDN QMVEKNILRT QTLLCDMLMR DAPLGIVSQS PNIMDLVKCD GAALLYKDKI WKLGTTPSEF HLQEIASWLC EYHMDSTGLS TDSLHDAGFP
0501: RALSLGDSVC GMAAVRISSK DMIFWFRSHT AGEVRWGGAK HDPDDRDDAR RMHPRSSFKA FLEVVKTRSL PWKDYEMDAI HSLQLILRNA FKDSETTDVN
0601: TKVIYSKLND LKIDGIQELE AVTSEMVRLI ETATVPILAV DSDGLVNGWN TKIAELTGLS VDEAIGKHFL TLVEDSSVEI VKRMLENALE GTEEQNVQFE
0701: IKTHLSRADA GPISLVVNAC ASRDLHENVV GVCFVAHDLT GQKTVMDKFT RIEGDYKAII QNPNPLIPPI FGTDEFGWCT EWNPAMSKLT GLKREEVIDK
0801: MLLGEVFGTQ KSCCRLKNQE AFVNLGIVLN NAVTSQDPEK VSFAFFTRGG KYVECLLCVS KKLDREGVVT GVFCFLQLAS HELQQALHVQ RLAERTAVKR
0901: LKALAYIKRQ IRNPLSGIMF TRKMIEGTEL GPEQRRILQT SALCQKQLSK ILDDSDLESI IEGCLDLEMK EFTLNEVLTA STSQVMMKSN GKSVRITNET
1001: GEEVMSDTLY GDSIRLQQVL ADFMLMAVNF TPSGGQLTVS ASLRKDQLGR SVHLANLEIR LTHTGAGIPE FLLNQMFGTE EDVSEEGLSL MVSRKLVKLM
1101: NGDVQYLRQA GKSSFIITAE LAAANK
Arabidopsis Description
PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.