Factsheet for Zm00001d008542_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91089	Sorghum	cytosol	43.39	58.66
TraesCS4B01G052000.1	Wheat	mitochondrion	73.97	20.23
Zm00001d013402_P005	Maize	nucleus	89.26	19.1
OQU91090	Sorghum	nucleus	88.84	19.01
Zm00001d033799_P001	Maize	cytosol	88.43	18.92
Os03t0719800-01	Rice	plastid	83.47	17.91
TraesCS4A01G262900.1	Wheat	mitochondrion	76.86	16.46
HORVU4Hr1G008610.2	Barley	mitochondrion	76.86	16.46
TraesCS4D01G052200.1	Wheat	plastid	75.21	16.05
GSMUA_Achr8P06130_001	Banana	cytosol, mitochondrion	67.77	15.26
GSMUA_Achr5P27310_001	Banana	cytosol	9.5	14.84
CDY06362	Canola	cytosol, plastid	61.98	13.38
Bra031672.1-P	Field mustard	cytosol, plastid	61.57	13.29
VIT_14s0060g00100.t01	Wine grape	nucleus	61.57	13.26
CDY22632	Canola	cytosol, plastid	60.33	13.0
Solyc10g044670.1.1	Tomato	extracellular	60.33	13.0
AT1G09570.3	Thale cress	cytosol	59.92	12.88
PGSC0003DMT400040772	Potato	cytosol	59.5	12.82
CDY50896	Canola	endoplasmic reticulum, plastid, vacuole	61.16	12.75
KRG90417	Soybean	nucleus	58.68	12.64
KRH33709	Soybean	endoplasmic reticulum, golgi, plastid	61.57	12.51
KRG96653	Soybean	nucleus	57.85	12.39
KRH68382	Soybean	endoplasmic reticulum, plastid, vacuole	49.59	12.32
CDX93501	Canola	cytosol	61.16	12.31
Bra020013.1-P	Field mustard	cytosol	60.74	12.15
Zm00001d034038_P002	Maize	peroxisome	48.76	10.4
Zm00001d028905_P001	Maize	extracellular	40.91	8.53
Zm00001d013262_P001	Maize	nucleus, plastid	45.87	8.1
Zm00001d047632_P001	Maize	plastid	38.84	8.06
Zm00001d018728_P001	Maize	cytosol, mitochondrion	2.07	2.35
HORVU0Hr1G023250.4	Barley	cytosol	3.31	2.3
HORVU1Hr1G068750.7	Barley	cytosol	2.89	1.97
Zm00001d024238_P001	Maize	cytosol	2.48	1.36
Zm00001d050162_P001	Maize	cytosol	0.41	0.72
Zm00001d012117_P001	Maize	cytosol	0.41	0.68
Zm00001d022520_P001	Maize	cytosol	0.41	0.68
Zm00001d000219_P001	Maize	cytosol	0.0	0.0
Zm00001d006712_P001	Maize	peroxisome	0.0	0.0
Zm00001d025231_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d008542_P001	EnsemblPlants:Zm00001d008542_T001	EnsemblPlantsGene:Zm00001d008542	EntrezGene:103636754	Gene3D:3.30.450.20	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:PAS-like_dom_sf
InterPro:PAS_2	PANTHER:PTHR43719	PANTHER:PTHR43719:SF13	PFAM:PF08446	ProteinID:AQK90150.1	SEG:seg
SUPFAM:SSF55785	UniParc:UPI000220AC9C	UniProt:A0A1D6FDV1	MapMan:35.1	:	:

Description

Phytochrome A

Coordinates

chr8:+:12317759..12318487

Molecular Weight (calculated)

26636.1 Da

IEP (calculated)

9.160

GRAVY (calculated)

-0.050

Length

242 amino acids

Sequence
(BLAST)

001: MSSSRPAHSS SSSSRTRQSS RARILAQTTL DAELNAEYEE SGDSFDYSKL VEAQRSTPPE QQGRSGKVIA YLQHIQRGKL IQPFGCLLAL DEKSFRVIAF
101: SENTPEMLTT VSHAVPNVDD PPKLGIGTNV RSLFTDPGAT TLQKALGFAD VSLLNPILVQ CKTSGKPFYA IVHRVTGCLV VVFEPVKPTE FPATVAGALQ
201: SYKLAAKAIF KMQSYSVFIY ILNTYLLFFR ESTRICPFCI VK

Best Arabidopsis Sequence Match ( AT1G09570.1 )
(BLAST)

0001: MSGSRPTQSS EGSRRSRHSA RIIAQTTVDA KLHADFEESG SSFDYSTSVR VTGPVVENQP PRSDKVTTTY LHHIQKGKLI QPFGCLLALD EKTFKVIAYS
0101: ENASELLTMA SHAVPSVGEH PVLGIGTDIR SLFTAPSASA LQKALGFGDV SLLNPILVHC RTSAKPFYAI IHRVTGSIII DFEPVKPYEV PMTAAGALQS
0201: YKLAAKAITR LQSLPSGSME RLCDTMVQEV FELTGYDRVM AYKFHEDDHG EVVSEVTKPG LEPYLGLHYP ATDIPQAARF LFMKNKVRMI VDCNAKHARV
0301: LQDEKLSFDL TLCGSTLRAP HSCHLQYMAN MDSIASLVMA VVVNEEDGEG DAPDATTQPQ KRKRLWGLVV CHNTTPRFVP FPLRYACEFL AQVFAIHVNK
0401: EVELDNQMVE KNILRTQTLL CDMLMRDAPL GIVSQSPNIM DLVKCDGAAL LYKDKIWKLG TTPSEFHLQE IASWLCEYHM DSTGLSTDSL HDAGFPRALS
0501: LGDSVCGMAA VRISSKDMIF WFRSHTAGEV RWGGAKHDPD DRDDARRMHP RSSFKAFLEV VKTRSLPWKD YEMDAIHSLQ LILRNAFKDS ETTDVNTKVI
0601: YSKLNDLKID GIQELEAVTS EMVRLIETAT VPILAVDSDG LVNGWNTKIA ELTGLSVDEA IGKHFLTLVE DSSVEIVKRM LENALEGTEE QNVQFEIKTH
0701: LSRADAGPIS LVVNACASRD LHENVVGVCF VAHDLTGQKT VMDKFTRIEG DYKAIIQNPN PLIPPIFGTD EFGWCTEWNP AMSKLTGLKR EEVIDKMLLG
0801: EVFGTQKSCC RLKNQEAFVN LGIVLNNAVT SQDPEKVSFA FFTRGGKYVE CLLCVSKKLD REGVVTGVFC FLQLASHELQ QALHVQRLAE RTAVKRLKAL
0901: AYIKRQIRNP LSGIMFTRKM IEGTELGPEQ RRILQTSALC QKQLSKILDD SDLESIIEGC LDLEMKEFTL NEVLTASTSQ VMMKSNGKSV RITNETGEEV
1001: MSDTLYGDSI RLQQVLADFM LMAVNFTPSG GQLTVSASLR KDQLGRSVHL ANLEIRLTHT GAGIPEFLLN QMFGTEEDVS EEGLSLMVSR KLVKLMNGDV
1101: QYLRQAGKSS FIITAELAAA NK

Arabidopsis Description

PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.