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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • plastid 2
  • mitochondrion 2
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra031672.1-P Field mustard cytosol, plastid 92.72 93.13
CDY06362 Canola cytosol, plastid 92.63 93.04
CDY22632 Canola cytosol, plastid 92.45 92.7
CDY50896 Canola endoplasmic reticulum, plastid, vacuole 94.85 91.99
CDX93501 Canola cytosol 95.12 89.1
Bra020013.1-P Field mustard cytosol 94.76 88.18
VIT_14s0060g00100.t01 Wine grape nucleus 81.35 81.49
Solyc10g044670.1.1 Tomato extracellular 78.69 78.9
PGSC0003DMT400040772 Potato cytosol 78.24 78.45
KRG90417 Soybean nucleus 78.15 78.36
KRG96653 Soybean nucleus 73.98 73.72
KRH33709 Soybean endoplasmic reticulum, golgi, plastid 77.53 73.3
GSMUA_Achr8P06130_001 Banana cytosol, mitochondrion 65.45 68.56
HORVU0Hr1G023250.4 Barley cytosol 20.87 67.53
HORVU1Hr1G068750.7 Barley cytosol 21.05 66.76
TraesCS4B01G052000.1 Wheat mitochondrion 51.78 65.88
KRH68382 Soybean endoplasmic reticulum, plastid, vacuole 56.39 65.2
GSMUA_Achr5P27310_001 Banana cytosol 8.79 63.87
OQU91090 Sorghum nucleus 63.5 63.22
Zm00001d013402_P005 Maize nucleus 63.23 62.95
Zm00001d033799_P001 Maize cytosol 63.14 62.86
Os03t0719800-01 Rice plastid 62.97 62.85
HORVU4Hr1G008610.2 Barley mitochondrion 61.99 61.77
TraesCS4A01G262900.1 Wheat mitochondrion 61.63 61.42
TraesCS4D01G052200.1 Wheat plastid 61.63 61.2
Zm00001d008542_P001 Maize cytosol 12.88 59.92
OQU91089 Sorghum cytosol 8.88 55.87
AT5G35840.1 Thale cress mitochondrion 51.33 52.03
AT4G16250.1 Thale cress plastid 51.51 49.83
AT2G18790.1 Thale cress nucleus 51.33 49.32
AT4G18130.1 Thale cress cytosol 46.71 47.3
Protein Annotations
Gene3D:1.10.287.130MapMan:26.1.1.1Gene3D:3.30.450.20Gene3D:3.30.450.270Gene3D:3.30.450.40Gene3D:3.30.565.10
EntrezGene:837483UniProt:A0A1P8AVD9ProteinID:AAA21351.1ProteinID:AAC33219.1ProteinID:AEE28462.1ProteinID:AEE28463.1
ProteinID:ANM60634.1ProteinID:ANM60635.1ProteinID:ANM60636.1ProteinID:ANM60637.1ArrayExpress:AT1G09570EnsemblPlantsGene:AT1G09570
RefSeq:AT1G09570TAIR:AT1G09570RefSeq:AT1G09570-TAIR-GEnsemblPlants:AT1G09570.3EMBL:AY039520ncoils:Coil
InterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155GO:GO:0000160GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0003729GO:GO:0003824GO:GO:0004672GO:GO:0004871GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654
GO:GO:0005737GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0006412GO:GO:0006464
GO:GO:0006468GO:GO:0007154GO:GO:0007165GO:GO:0007275GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009584GO:GO:0009585GO:GO:0009605GO:GO:0009606GO:GO:0009628
GO:GO:0009630GO:GO:0009638GO:GO:0009640GO:GO:0009791GO:GO:0009881GO:GO:0009883
GO:GO:0009987GO:GO:0010018GO:GO:0010161GO:GO:0010201GO:GO:0010203GO:GO:0010218
GO:GO:0016301GO:GO:0016310GO:GO:0016604GO:GO:0016607GO:GO:0016740GO:GO:0017006
GO:GO:0017148GO:GO:0018298GO:GO:0019538GO:GO:0023014GO:GO:0031516GO:GO:0038023
GO:GO:0042802GO:GO:0042803GO:GO:0046685GO:GO:0050896InterPro:HATPase_CInterPro:HATPase_C_sf
InterPro:HisK_dim/PInterPro:His_kinase_domInterPro:IPR000014InterPro:IPR005467InterPro:IPR016132InterPro:IPR029016
InterPro:IPR036890RefSeq:NP_001117256.1RefSeq:NP_001322906.1RefSeq:NP_001322907.1RefSeq:NP_001322908.1RefSeq:NP_001322909.1
RefSeq:NP_172428.1ProteinID:OAP14284.1InterPro:PASInterPro:PAS-like_dom_sfInterPro:PAS_2InterPro:PAS_fold
PFAM:PF00360PFAM:PF00989PFAM:PF01590PFAM:PF02518PFAM:PF08446Symbol:PHYA
PIRSF:PIRSF000084PRINTS:PR01033ScanProsite:PS00245PFscan:PS50046PFscan:PS50109PFscan:PS50112
PANTHER:PTHR43719PANTHER:PTHR43719:SF13InterPro:Phyto_chromo_BSInterPro:Phyto_chromo_attachmentInterPro:PhytochromeInterPro:Phytochrome_A-E
InterPro:Phytochrome_cen-regSMART:SM00065SMART:SM00091SMART:SM00387SMART:SM00388SUPFAM:SSF55781
SUPFAM:SSF55785SUPFAM:SSF55874TIGRFAMs:TIGR00229UniParc:UPI0008485366EMBL:X17341SEG:seg
Description
PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
Coordinates
chr1:-:3095203..3099830
Molecular Weight (calculated)
125025.0 Da
IEP (calculated)
6.332
GRAVY (calculated)
-0.149
Length
1126 amino acids
Sequence
(BLAST)
0001: MEKKMSGSRP TQSSEGSRRS RHSARIIAQT TVDAKLHADF EESGSSFDYS TSVRVTGPVV ENQPPRSDKV TTTYLHHIQK GKLIQPFGCL LALDEKTFKV
0101: IAYSENASEL LTMASHAVPS VGEHPVLGIG TDIRSLFTAP SASALQKALG FGDVSLLNPI LVHCRTSAKP FYAIIHRVTG SIIIDFEPVK PYEVPMTAAG
0201: ALQSYKLAAK AITRLQSLPS GSMERLCDTM VQEVFELTGY DRVMAYKFHE DDHGEVVSEV TKPGLEPYLG LHYPATDIPQ AARFLFMKNK VRMIVDCNAK
0301: HARVLQDEKL SFDLTLCGST LRAPHSCHLQ YMANMDSIAS LVMAVVVNEE DGEGDAPDAT TQPQKRKRLW GLVVCHNTTP RFVPFPLRYA CEFLAQVFAI
0401: HVNKEVELDN QMVEKNILRT QTLLCDMLMR DAPLGIVSQS PNIMDLVKCD GAALLYKDKI WKLGTTPSEF HLQEIASWLC EYHMDSTGLS TDSLHDAGFP
0501: RALSLGDSVC GMAAVRISSK DMIFWFRSHT AGEVRWGGAK HDPDDRDDAR RMHPRSSFKA FLEVVKTRSL PWKDYEMDAI HSLQLILRNA FKDSETTDVN
0601: TKVIYSKLND LKIDGIQELE AVTSEMVRLI ETATVPILAV DSDGLVNGWN TKIAELTGLS VDEAIGKHFL TLVEDSSVEI VKRMLENALE GTEEQNVQFE
0701: IKTHLSRADA GPISLVVNAC ASRDLHENVV GVCFVAHDLT GQKTVMDKFT RIEGDYKAII QNPNPLIPPI FGTDEFGWCT EWNPAMSKLT GLKREEVIDK
0801: MLLGEVFGTQ KSCCRLKNQE AFVNLGIVLN NAVTSQDPEK VSFAFFTRGG KYVECLLCVS KKLDREGVVT GVFCFLQLAS HELQQALHVQ RLAERTAVKR
0901: LKALAYIKRQ IRNPLSGIMF TRKMIEGTEL GPEQRRILQT SALCQKQLSK ILDDSDLESI IEGCLDLEMK EFTLNEVLTA STSQVMMKSN GKSVRITNET
1001: GEEVMSDTLY GDSIRLQQVL ADFMLMAVNF TPSGGQLTVS ASLRKDQLGR SVHLANLEIR LTHTGAGIPE FLLNQMFGTE EDVSEEGLSL MVSRKLVKLM
1101: NGDVQYLRQA GKSSFIITAE LAAANK
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.