Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G052000.1 | Wheat | mitochondrion | 74.25 | 94.8 |
| TraesCS4A01G262900.1 | Wheat | mitochondrion | 94.6 | 94.6 |
| HORVU0Hr1G023250.4 | Barley | cytosol | 29.11 | 94.54 |
| TraesCS4D01G052200.1 | Wheat | plastid | 94.16 | 93.83 |
| HORVU1Hr1G068750.7 | Barley | cytosol | 28.94 | 92.11 |
| OQU91090 | Sorghum | nucleus | 84.96 | 84.88 |
| Zm00001d033799_P001 | Maize | cytosol | 84.69 | 84.62 |
| Os03t0719800-01 | Rice | plastid | 84.25 | 84.4 |
| Zm00001d013402_P005 | Maize | nucleus | 84.16 | 84.08 |
| OQU91089 | Sorghum | cytosol | 12.3 | 77.65 |
| Zm00001d008542_P001 | Maize | cytosol | 16.46 | 76.86 |
| GSMUA_Achr8P06130_001 | Banana | cytosol, mitochondrion | 65.31 | 68.65 |
| VIT_14s0060g00100.t01 | Wine grape | nucleus | 64.6 | 64.95 |
| KRG90417 | Soybean | nucleus | 63.01 | 63.4 |
| GSMUA_Achr5P27310_001 | Banana | cytosol | 8.67 | 63.23 |
| Solyc10g044670.1.1 | Tomato | extracellular | 62.65 | 63.05 |
| PGSC0003DMT400040772 | Potato | cytosol | 62.57 | 62.96 |
| CDY06362 | Canola | cytosol, plastid | 61.86 | 62.35 |
| Bra031672.1-P | Field mustard | cytosol, plastid | 61.68 | 62.18 |
| AT1G09570.3 | Thale cress | cytosol | 61.77 | 61.99 |
| CDY22632 | Canola | cytosol, plastid | 61.5 | 61.89 |
| KRG96653 | Soybean | nucleus | 61.15 | 61.15 |
| CDY50896 | Canola | endoplasmic reticulum, plastid, vacuole | 61.95 | 60.29 |
| KRH33709 | Soybean | endoplasmic reticulum, golgi, plastid | 63.01 | 59.78 |
| CDX93501 | Canola | cytosol | 61.95 | 58.24 |
| Bra020013.1-P | Field mustard | cytosol | 61.86 | 57.77 |
| KRH68382 | Soybean | endoplasmic reticulum, plastid, vacuole | 48.14 | 55.85 |
| HORVU5Hr1G095530.2 | Barley | plastid | 52.92 | 52.14 |
| HORVU4Hr1G053400.1 | Barley | plasma membrane | 48.23 | 46.66 |
Protein Annotations
Description
Phytochrome [Source:UniProtKB/TrEMBL;Acc:Q2I7M3]
Coordinates
chrchr4H:+:23599210..23606048
Molecular Weight (calculated)
125301.0 Da
IEP (calculated)
5.276
GRAVY (calculated)
-0.118
Length
1130 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSSRPATSS SSRNRQSTQE RMLAQTTLDA ELNAEFEESS DSFDYSKLVE AQRDTPTVLQ EGRSEKVIAY LQHIQRGKMI QSFGCLLALD EKSFNLIAFS
0101: ENAPEMLTTV SHAVPSVDDP PRLDIGTNVR SLFTEQGATA LHKALGFADV SLLNPILVQC KTSGKPFYAI VHRATGCLVV DFEPVNPTEF PATAAGALQS
0201: YKLAAKAISK IQALPGGSME LLCNTVVKEV FELTGYDRVM AYKFHEDNHG EVFAEITKPG LEPYLGLHYP ATDIPQAARF LFMKNKVRMI CDVRARTLKV
0301: IEDEALPFDI SLCGSSLRAA HSCHLQYMEN MNSIASLVMA VVVNESEEDD EAESEQPAQQ QKKKILWGLV VCHHESPRYV PFPLRYACEF LAQVFAVHVN
0401: KEFEVQKQLR EKSILRMQTI LSDMLFKEAS PLTIVSGTPN IMDLIKCDGA ALLYGDKVWR LGNAPTESQI RHIALWLSEV HMDSTGLSTE SLHDAGYPGA
0501: SALGDMVCGI AVAKINSNDI LFWFRSHTAE EIRWGGAKND PSDQDDSRRM HPRLSFKAFL EVVKMKSLAW SDYEMDAIHS LQLILRGALD DVAKPTGKAS
0601: LDEQIGDLKL DGIAELQAVT SEMVRLMETA TVPILAVDGN GLVNGWNQKA AELTGLRVDD AIGRHILTLV EESSVPVVQR MLYLALQGKE EKEVRFDMKT
0701: HGPKRDDGPV ILVVNACASR DLHDDVVGVC FVAQDMTVHK LVMDKFTRVK GDYMAIVHNP NPLIPPIFGA DEFGWCSEWN AAMTKLTGWH REEVLDKMLL
0801: GEVFDSSNAS CLLKNKDAFV GLCVLINSAL AGEETEKAPF GFFDRSGKYT ECLLSVNSRA NEDGLITGVF CFIHIPSHEL QQALQVQQAS EQASLRRLKA
0901: FSYMRHAINN PLSGMLYSRK ALKNTDLNEE QMRQIHVSDN CHHQLNKILA DLDQDNIMEN SSCLDLEMAE FVLQDVVVAA VSQVLIACQG KGIRISCNLP
1001: ERFMKQLVYG DGVRLQQILS DFLSISVKFS PVGGSVEISA QATKNSIGEN LHLIDLELRI KHRGLGVPAE LMAQMFEEEN TEQSEEGLGL LVSRNLLRLM
1101: NGDVRHLREA GMSIFILTAE LACAPTAMRQ
0101: ENAPEMLTTV SHAVPSVDDP PRLDIGTNVR SLFTEQGATA LHKALGFADV SLLNPILVQC KTSGKPFYAI VHRATGCLVV DFEPVNPTEF PATAAGALQS
0201: YKLAAKAISK IQALPGGSME LLCNTVVKEV FELTGYDRVM AYKFHEDNHG EVFAEITKPG LEPYLGLHYP ATDIPQAARF LFMKNKVRMI CDVRARTLKV
0301: IEDEALPFDI SLCGSSLRAA HSCHLQYMEN MNSIASLVMA VVVNESEEDD EAESEQPAQQ QKKKILWGLV VCHHESPRYV PFPLRYACEF LAQVFAVHVN
0401: KEFEVQKQLR EKSILRMQTI LSDMLFKEAS PLTIVSGTPN IMDLIKCDGA ALLYGDKVWR LGNAPTESQI RHIALWLSEV HMDSTGLSTE SLHDAGYPGA
0501: SALGDMVCGI AVAKINSNDI LFWFRSHTAE EIRWGGAKND PSDQDDSRRM HPRLSFKAFL EVVKMKSLAW SDYEMDAIHS LQLILRGALD DVAKPTGKAS
0601: LDEQIGDLKL DGIAELQAVT SEMVRLMETA TVPILAVDGN GLVNGWNQKA AELTGLRVDD AIGRHILTLV EESSVPVVQR MLYLALQGKE EKEVRFDMKT
0701: HGPKRDDGPV ILVVNACASR DLHDDVVGVC FVAQDMTVHK LVMDKFTRVK GDYMAIVHNP NPLIPPIFGA DEFGWCSEWN AAMTKLTGWH REEVLDKMLL
0801: GEVFDSSNAS CLLKNKDAFV GLCVLINSAL AGEETEKAPF GFFDRSGKYT ECLLSVNSRA NEDGLITGVF CFIHIPSHEL QQALQVQQAS EQASLRRLKA
0901: FSYMRHAINN PLSGMLYSRK ALKNTDLNEE QMRQIHVSDN CHHQLNKILA DLDQDNIMEN SSCLDLEMAE FVLQDVVVAA VSQVLIACQG KGIRISCNLP
1001: ERFMKQLVYG DGVRLQQILS DFLSISVKFS PVGGSVEISA QATKNSIGEN LHLIDLELRI KHRGLGVPAE LMAQMFEEEN TEQSEEGLGL LVSRNLLRLM
1101: NGDVRHLREA GMSIFILTAE LACAPTAMRQ
0001: MSGSRPTQSS EGSRRSRHSA RIIAQTTVDA KLHADFEESG SSFDYSTSVR VTGPVVENQP PRSDKVTTTY LHHIQKGKLI QPFGCLLALD EKTFKVIAYS
0101: ENASELLTMA SHAVPSVGEH PVLGIGTDIR SLFTAPSASA LQKALGFGDV SLLNPILVHC RTSAKPFYAI IHRVTGSIII DFEPVKPYEV PMTAAGALQS
0201: YKLAAKAITR LQSLPSGSME RLCDTMVQEV FELTGYDRVM AYKFHEDDHG EVVSEVTKPG LEPYLGLHYP ATDIPQAARF LFMKNKVRMI VDCNAKHARV
0301: LQDEKLSFDL TLCGSTLRAP HSCHLQYMAN MDSIASLVMA VVVNEEDGEG DAPDATTQPQ KRKRLWGLVV CHNTTPRFVP FPLRYACEFL AQVFAIHVNK
0401: EVELDNQMVE KNILRTQTLL CDMLMRDAPL GIVSQSPNIM DLVKCDGAAL LYKDKIWKLG TTPSEFHLQE IASWLCEYHM DSTGLSTDSL HDAGFPRALS
0501: LGDSVCGMAA VRISSKDMIF WFRSHTAGEV RWGGAKHDPD DRDDARRMHP RSSFKAFLEV VKTRSLPWKD YEMDAIHSLQ LILRNAFKDS ETTDVNTKVI
0601: YSKLNDLKID GIQELEAVTS EMVRLIETAT VPILAVDSDG LVNGWNTKIA ELTGLSVDEA IGKHFLTLVE DSSVEIVKRM LENALEGTEE QNVQFEIKTH
0701: LSRADAGPIS LVVNACASRD LHENVVGVCF VAHDLTGQKT VMDKFTRIEG DYKAIIQNPN PLIPPIFGTD EFGWCTEWNP AMSKLTGLKR EEVIDKMLLG
0801: EVFGTQKSCC RLKNQEAFVN LGIVLNNAVT SQDPEKVSFA FFTRGGKYVE CLLCVSKKLD REGVVTGVFC FLQLASHELQ QALHVQRLAE RTAVKRLKAL
0901: AYIKRQIRNP LSGIMFTRKM IEGTELGPEQ RRILQTSALC QKQLSKILDD SDLESIIEGC LDLEMKEFTL NEVLTASTSQ VMMKSNGKSV RITNETGEEV
1001: MSDTLYGDSI RLQQVLADFM LMAVNFTPSG GQLTVSASLR KDQLGRSVHL ANLEIRLTHT GAGIPEFLLN QMFGTEEDVS EEGLSLMVSR KLVKLMNGDV
1101: QYLRQAGKSS FIITAELAAA NK
0101: ENASELLTMA SHAVPSVGEH PVLGIGTDIR SLFTAPSASA LQKALGFGDV SLLNPILVHC RTSAKPFYAI IHRVTGSIII DFEPVKPYEV PMTAAGALQS
0201: YKLAAKAITR LQSLPSGSME RLCDTMVQEV FELTGYDRVM AYKFHEDDHG EVVSEVTKPG LEPYLGLHYP ATDIPQAARF LFMKNKVRMI VDCNAKHARV
0301: LQDEKLSFDL TLCGSTLRAP HSCHLQYMAN MDSIASLVMA VVVNEEDGEG DAPDATTQPQ KRKRLWGLVV CHNTTPRFVP FPLRYACEFL AQVFAIHVNK
0401: EVELDNQMVE KNILRTQTLL CDMLMRDAPL GIVSQSPNIM DLVKCDGAAL LYKDKIWKLG TTPSEFHLQE IASWLCEYHM DSTGLSTDSL HDAGFPRALS
0501: LGDSVCGMAA VRISSKDMIF WFRSHTAGEV RWGGAKHDPD DRDDARRMHP RSSFKAFLEV VKTRSLPWKD YEMDAIHSLQ LILRNAFKDS ETTDVNTKVI
0601: YSKLNDLKID GIQELEAVTS EMVRLIETAT VPILAVDSDG LVNGWNTKIA ELTGLSVDEA IGKHFLTLVE DSSVEIVKRM LENALEGTEE QNVQFEIKTH
0701: LSRADAGPIS LVVNACASRD LHENVVGVCF VAHDLTGQKT VMDKFTRIEG DYKAIIQNPN PLIPPIFGTD EFGWCTEWNP AMSKLTGLKR EEVIDKMLLG
0801: EVFGTQKSCC RLKNQEAFVN LGIVLNNAVT SQDPEKVSFA FFTRGGKYVE CLLCVSKKLD REGVVTGVFC FLQLASHELQ QALHVQRLAE RTAVKRLKAL
0901: AYIKRQIRNP LSGIMFTRKM IEGTELGPEQ RRILQTSALC QKQLSKILDD SDLESIIEGC LDLEMKEFTL NEVLTASTSQ VMMKSNGKSV RITNETGEEV
1001: MSDTLYGDSI RLQQVLADFM LMAVNFTPSG GQLTVSASLR KDQLGRSVHL ANLEIRLTHT GAGIPEFLLN QMFGTEEDVS EEGLSLMVSR KLVKLMNGDV
1101: QYLRQAGKSS FIITAELAAA NK
Arabidopsis Description
PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.