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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • mitochondrion 2
  • cytosol 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU4Hr1G053400.1
HORVU5Hr1G095530.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G35840.1 HORVU4Hr1G053400.1 AT2G18790.1 15273290
AT5G35840.1 HORVU4Hr1G053400.1 AT2G18790.1 19286967
AT5G35840.1 HORVU4Hr1G053400.1 AT4G16250.1 19286967
AT5G35840.1 HORVU5Hr1G095530.2 AT5G35840.1 15273290
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5D01G401000.1 Wheat cytosol, plastid 95.99 96.66
TraesCS5A01G391300.2 Wheat cytosol, plastid 95.82 94.42
TraesCS5B01G396200.1 Wheat plastid 89.63 89.24
Zm00001d034038_P002 Maize peroxisome 84.83 85.73
EER93439 Sorghum plastid 84.83 85.73
Os03t0752100-01 Rice cytosol 16.48 82.53
Zm00001d006712_P001 Maize peroxisome 12.55 82.29
Zm00001d018728_P001 Maize cytosol, mitochondrion 14.65 78.87
GSMUA_Achr4P32940_001 Banana cytosol 7.76 76.72
Zm00001d013262_P001 Maize nucleus, plastid 84.22 70.46
GSMUA_Achr6P00080_001 Banana mitochondrion 61.55 70.39
VIT_12s0057g00980.t01 Wine grape cytosol, plastid 68.0 69.77
PGSC0003DMT400044822 Potato plastid 63.82 65.36
Solyc07g045480.2.1 Tomato plastid 62.77 64.4
HORVU0Hr1G023250.4 Barley cytosol 18.74 61.78
Zm00001d050162_P001 Maize cytosol 7.41 61.59
HORVU1Hr1G068750.7 Barley cytosol 18.74 60.56
GSMUA_Achr4P32930_001 Banana cytosol 30.6 59.59
AT5G35840.1 Thale cress mitochondrion 57.28 59.14
Zm00001d022520_P001 Maize cytosol 7.5 58.9
Zm00001d012117_P001 Maize cytosol 7.41 58.22
CDY38546 Canola cytosol, plastid 55.88 57.39
Bra039485.1-P Field mustard cytosol, plastid 55.8 57.3
CDY06455 Canola cytosol, mitochondrion, nucleus, plastid 55.8 57.25
HORVU4Hr1G008610.2 Barley mitochondrion 52.14 52.92
HORVU4Hr1G053400.1 Barley plasma membrane 51.87 50.94
Protein Annotations
Gene3D:1.10.287.130MapMan:26.1.1.1Gene3D:3.30.450.20Gene3D:3.30.450.270Gene3D:3.30.450.40Gene3D:3.30.565.10
ProteinID:ABB77851.1ProteinID:BAN91999.1InterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155GO:GO:0000160
GO:GO:0003674GO:GO:0003824GO:GO:0004871GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0006464
GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009584
GO:GO:0009585GO:GO:0009605GO:GO:0009628GO:GO:0009881GO:GO:0009987GO:GO:0016301
GO:GO:0016740GO:GO:0017006GO:GO:0018298GO:GO:0019538GO:GO:0023014GO:GO:0038023
GO:GO:0042803GO:GO:0050896InterPro:HATPase_CInterPro:HATPase_C_sfEnsemblPlantsGene:HORVU5Hr1G095530EnsemblPlants:HORVU5Hr1G095530.2
InterPro:HisK_dim/PInterPro:His_kinase_domInterPro:IPR000014InterPro:IPR005467InterPro:IPR016132InterPro:IPR029016
InterPro:IPR036890InterPro:PASInterPro:PAS-like_dom_sfInterPro:PAS_2InterPro:PAS_foldPFAM:PF00360
PFAM:PF00512PFAM:PF00989PFAM:PF01590PFAM:PF02518PFAM:PF08446PIRSF:PIRSF000084
PRINTS:PR01033ScanProsite:PS00245PFscan:PS50046PFscan:PS50109PFscan:PS50112PANTHER:PTHR43719
PANTHER:PTHR43719:SF4InterPro:Phyto_chromo_BSInterPro:Phyto_chromo_attachmentInterPro:PhytochromeInterPro:Phytochrome_A-EInterPro:Phytochrome_cen-reg
UniProt:Q2I714SMART:SM00065SMART:SM00091SMART:SM00387SMART:SM00388SUPFAM:SSF55781
SUPFAM:SSF55785SUPFAM:SSF55874TIGRFAMs:TIGR00229UniParc:UPI0000695EF8SEG:seg:
Description
Phytochrome [Source:UniProtKB/TrEMBL;Acc:Q2I714]
Coordinates
chrchr5H:+:598558569..598564416
Molecular Weight (calculated)
126745.0 Da
IEP (calculated)
6.081
GRAVY (calculated)
-0.147
Length
1147 amino acids
Sequence
(BLAST)
0001: MSSSRSNSRS ACSRGSSARS RHSERVVAQT PVDAQLHAEF ESSHRHFDYS SSVSALNRSG ASTSSAVSAF LQNMQRGRYI QPFGCLLAIH PESFALLAYS
0101: ENAAEMLDLT PHAVPTIDQR DALAVGADVR TLFRSQSAVA LHKAAVFGEV NLLNPILVHA RTSGKPFYAI LHRIDVGLVI DLEPVNPADV PVTAAGALKS
0201: YKLAAKAISR LQSLPSGNLS LLCDVLVREV SELTGYDRVM AYKFHEDEHG EVIAECRRSD LEPYLGLHYP ATDIPQASRF LFMKNKVRMI CDCAASPVKL
0301: IQDGNLSQPI SLCGSTMRAP HGCHAQYMAN MGSIASLVMS VTVNEDDDED GDTGSDQQPK GRKLWGLVVC HHTSPRFVPF PLRYACEFLL QVFGIQLNKE
0401: VELASQAKER HILRTQTLLC DMLLRDAPVG IFTQSPNVMD LVKCDGAALC YQNQIMVLGS APSEGEIKKI AAWLLECHDG STGLSTDSLL EAGYPGASAL
0501: GEVVCGMAAI KISSKGFIFW FRSHTAKEIK WSGAKHEPGD ADDNGRRMHP RSSFRAFLEV VKWRSVPWED VEMDAIHSLQ LILRGSLQDE DANDNNVRSI
0601: VEAPSDDVRK IQGLLELRIV TNEMVRLIET ATAPILAVDI VGSINGWNGK VAEITGLPTT EAIGMLLVDL VEGDSVEVIK QMLNSAMQGT EEQNFEIKLK
0701: TFHQQESNGP VVLMVNACCS RDLSDKVVGV CFVAQDLTGH KMVMDKYTQI QGDYVAIVKN PNELIPPIFM INDLGSCLEW NEAMQKITGI KREDAIDKLL
0801: IGEVFTLHDY GCRVKDQATI TKLSILMNTV ISGQEPEKLA FGFFSTDGKY MESLLTANKR TDAEGKITGA LCFLHVPSPE LQHALQVQKM SEQAAARSFK
0901: ELTYIRQELK NPLNGMQFTR KLLEPSDLTE EQRQLFASNV LCQEQLKKIL HDNDLEGIEQ CYMEMNTVEF NLEEALNTVL MQGMSLSKEK QISLDRDWPV
1001: EVSSMYLYGD NLRLQQVLAD YLACTLQFTR PAEGPIVLQV IPKKEHIGSG MQIAHLEFRV VHPAPGVPEA LIQEMFRHGP GVSREGLGLH ISQKLVKTMS
1101: GTVQYLREAE SSSFIVLVEF PVAQLNSKRS KPSTSKWSKP STSKSNF
Best Arabidopsis Sequence Match ( AT5G35840.1 )
(BLAST)
0001: MSSNTSRSCS TRSRQNSRVS SQVLVDAKLH GNFEESERLF DYSASINLNM PSSSCEIPSS AVSTYLQKIQ RGMLIQPFGC LIVVDEKNLK VIAFSENTQE
0101: MLGLIPHTVP SMEQREALTI GTDVKSLFLS PGCSALEKAV DFGEISILNP ITLHCRSSSK PFYAILHRIE EGLVIDLEPV SPDEVPVTAA GALRSYKLAA
0201: KSISRLQALP SGNMLLLCDA LVKEVSELTG YDRVMVYKFH EDGHGEVIAE CCREDMEPYL GLHYSATDIP QASRFLFMRN KVRMICDCSA VPVKVVQDKS
0301: LSQPISLSGS TLRAPHGCHA QYMSNMGSVA SLVMSVTING SDSDEMNRDL QTGRHLWGLV VCHHASPRFV PFPLRYACEF LTQVFGVQIN KEAESAVLLK
0401: EKRILQTQSV LCDMLFRNAP IGIVTQSPNI MDLVKCDGAA LYYRDNLWSL GVTPTETQIR DLIDWVLKSH GGNTGFTTES LMESGYPDAS VLGESICGMA
0501: AVYISEKDFL FWFRSSTAKQ IKWGGARHDP NDRDGKRMHP RSSFKAFMEI VRWKSVPWDD MEMDAINSLQ LIIKGSLQEE HSKTVVDVPL VDNRVQKVDE
0601: LCVIVNEMVR LIDTAAVPIF AVDASGVING WNSKAAEVTG LAVEQAIGKP VSDLVEDDSV ETVKNMLALA LEGSEERGAE IRIRAFGPKR KSSPVELVVN
0701: TCCSRDMTNN VLGVCFIGQD VTGQKTLTEN YSRVKGDYAR IMWSPSTLIP PIFITNENGV CSEWNNAMQK LSGIKREEVV NKILLGEVFT TDDYGCCLKD
0801: HDTLTKLRIG FNAVISGQKN IEKLLFGFYH RDGSFIEALL SANKRTDIEG KVTGVLCFLQ VPSPELQYAL QVQQISEHAI ACALNKLAYL RHEVKDPEKA
0901: ISFLQDLLHS SGLSEDQKRL LRTSVLCREQ LAKVISDSDI EGIEEGYVEL DCSEFGLQES LEAVVKQVME LSIERKVQIS CDYPQEVSSM RLYGDNLRLQ
1001: QILSETLLSS IRFTPALRGL CVSFKVIARI EAIGKRMKRV ELEFRIIHPA PGLPEDLVRE MFQPLRKGTS REGLGLHITQ KLVKLMERGT LRYLRESEMS
1101: AFVILTEFPL I
Arabidopsis Description
PHYCPhytochrome C [Source:UniProtKB/Swiss-Prot;Acc:P14714]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.