Factsheet for GSMUA_Achr4P32940_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P08340_001
GSMUA_Achr4P32930_001
GSMUA_Achr4P32940_001
GSMUA_Achr6P00080_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35840.1	GSMUA_Achr3P08340_001	AT2G18790.1	15273290
AT5G35840.1	GSMUA_Achr3P08340_001	AT2G18790.1	19286967
AT5G35840.1	GSMUA_Achr3P08340_001	AT4G16250.1	19286967
AT5G35840.1	GSMUA_Achr4P32930_001	AT5G35840.1	15273290
AT5G35840.1	GSMUA_Achr4P32940_001	AT5G35840.1	15273290
AT5G35840.1	GSMUA_Achr6P00080_001	AT5G35840.1	15273290

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P27310_001	Banana	cytosol	34.48	25.81
GSMUA_Achr6P00080_001	Banana	mitochondrion	75.86	8.77
TraesCS5D01G401000.1	Wheat	cytosol, plastid	78.45	7.99
TraesCS5B01G396200.1	Wheat	plastid	78.45	7.9
VIT_12s0057g00980.t01	Wine grape	cytosol, plastid	75.86	7.87
EER93439	Sorghum	plastid	76.72	7.84
TraesCS5A01G391300.2	Wheat	cytosol, plastid	78.45	7.82
HORVU5Hr1G095530.2	Barley	plastid	76.72	7.76
Zm00001d034038_P002	Maize	peroxisome	75.86	7.75
AT5G35840.1	Thale cress	mitochondrion	69.83	7.29
CDY06455	Canola	cytosol, mitochondrion, nucleus, plastid	69.83	7.25
Bra039485.1-P	Field mustard	cytosol, plastid	68.97	7.16
CDY38546	Canola	cytosol, plastid	68.97	7.16
GSMUA_Achr3P08340_001	Banana	nucleus	65.52	6.98
Solyc07g045480.2.1	Tomato	plastid	67.24	6.98
PGSC0003DMT400044822	Potato	plastid	66.38	6.88
Zm00001d013262_P001	Maize	nucleus, plastid	75.0	6.35
GSMUA_Achr8P06130_001	Banana	cytosol, mitochondrion	57.76	6.23
Os03t0752100-01	Rice	cytosol	0.0	0.0
Zm00001d006712_P001	Maize	peroxisome	0.0	0.0
Zm00001d012117_P001	Maize	cytosol	0.0	0.0
Zm00001d018728_P001	Maize	cytosol, mitochondrion	0.0	0.0
Zm00001d022520_P001	Maize	cytosol	0.0	0.0
GSMUA_Achr4P32930_001	Banana	cytosol	0.0	0.0
Zm00001d050162_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.450.40	MapMan:35.1	InterPro:GAF	InterPro:GAF-like_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009584	GO:GO:0009605	GO:GO:0009628	GO:GO:0009987	GO:GO:0018298
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G32940_001	EnsemblPlants:GSMUA_Achr4P32940_001	EnsemblPlants:GSMUA_Achr4T32940_001	InterPro:IPR016132	InterPro:IPR029016
UniProt:M0SU56	PFAM:PF01590	ScanProsite:PS00245	PFscan:PS50046	PANTHER:PTHR43719	PANTHER:PTHR43719:SF4
InterPro:Phyto_chromo_BS	InterPro:Phyto_chromo_attachment	SUPFAM:SSF55781	UniParc:UPI0002952FD9	:	:

Description

Phytochrome [Source:GMGC_GENE;Acc:GSMUA_Achr4G32940_001]

Coordinates

chr4:-:29568345..29568863

Molecular Weight (calculated)

12998.7 Da

IEP (calculated)

6.593

GRAVY (calculated)

-0.197

Length

116 amino acids

Sequence
(BLAST)

001: MAYKFHEDEH GEVIADLCGS TLRAPHGCHA QYMANMGSTA SLVMSITICE HKDEASGGDQ QQKGQKLWSL VVYHHTSPML VPFPLRYACE FLMHVFGVQL
101: NKEVELAAQT KEKHIL

Best Arabidopsis Sequence Match ( AT5G35840.1 )
(BLAST)

0001: MSSNTSRSCS TRSRQNSRVS SQVLVDAKLH GNFEESERLF DYSASINLNM PSSSCEIPSS AVSTYLQKIQ RGMLIQPFGC LIVVDEKNLK VIAFSENTQE
0101: MLGLIPHTVP SMEQREALTI GTDVKSLFLS PGCSALEKAV DFGEISILNP ITLHCRSSSK PFYAILHRIE EGLVIDLEPV SPDEVPVTAA GALRSYKLAA
0201: KSISRLQALP SGNMLLLCDA LVKEVSELTG YDRVMVYKFH EDGHGEVIAE CCREDMEPYL GLHYSATDIP QASRFLFMRN KVRMICDCSA VPVKVVQDKS
0301: LSQPISLSGS TLRAPHGCHA QYMSNMGSVA SLVMSVTING SDSDEMNRDL QTGRHLWGLV VCHHASPRFV PFPLRYACEF LTQVFGVQIN KEAESAVLLK
0401: EKRILQTQSV LCDMLFRNAP IGIVTQSPNI MDLVKCDGAA LYYRDNLWSL GVTPTETQIR DLIDWVLKSH GGNTGFTTES LMESGYPDAS VLGESICGMA
0501: AVYISEKDFL FWFRSSTAKQ IKWGGARHDP NDRDGKRMHP RSSFKAFMEI VRWKSVPWDD MEMDAINSLQ LIIKGSLQEE HSKTVVDVPL VDNRVQKVDE
0601: LCVIVNEMVR LIDTAAVPIF AVDASGVING WNSKAAEVTG LAVEQAIGKP VSDLVEDDSV ETVKNMLALA LEGSEERGAE IRIRAFGPKR KSSPVELVVN
0701: TCCSRDMTNN VLGVCFIGQD VTGQKTLTEN YSRVKGDYAR IMWSPSTLIP PIFITNENGV CSEWNNAMQK LSGIKREEVV NKILLGEVFT TDDYGCCLKD
0801: HDTLTKLRIG FNAVISGQKN IEKLLFGFYH RDGSFIEALL SANKRTDIEG KVTGVLCFLQ VPSPELQYAL QVQQISEHAI ACALNKLAYL RHEVKDPEKA
0901: ISFLQDLLHS SGLSEDQKRL LRTSVLCREQ LAKVISDSDI EGIEEGYVEL DCSEFGLQES LEAVVKQVME LSIERKVQIS CDYPQEVSSM RLYGDNLRLQ
1001: QILSETLLSS IRFTPALRGL CVSFKVIARI EAIGKRMKRV ELEFRIIHPA PGLPEDLVRE MFQPLRKGTS REGLGLHITQ KLVKLMERGT LRYLRESEMS
1101: AFVILTEFPL I

Arabidopsis Description

PHYCPhytochrome C [Source:UniProtKB/Swiss-Prot;Acc:P14714]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.