Factsheet for Os03t0752100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	peroxisome
PTS1:	peroxisome
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0309200-01
Os03t0752100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35840.1	Os03t0309200-01	AT2G18790.1	15273290
AT5G35840.1	Os03t0309200-01	AT2G18790.1	19286967
AT5G35840.1	Os03t0309200-01	AT4G16250.1	19286967
AT5G35840.1	Os03t0752100-01	AT5G35840.1	15273290

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006712_P001	Maize	peroxisome	58.52	76.57
GSMUA_Achr4P32930_001	Banana	cytosol	53.28	20.71
TraesCS5D01G401000.1	Wheat	cytosol, plastid	82.53	16.59
HORVU5Hr1G095530.2	Barley	plastid	82.53	16.48
EER93439	Sorghum	plastid	80.35	16.21
TraesCS5A01G391300.2	Wheat	cytosol, plastid	82.1	16.15
Zm00001d034038_P002	Maize	peroxisome	79.04	15.95
GSMUA_Achr6P00080_001	Banana	mitochondrion	61.57	14.06
Zm00001d013262_P001	Maize	nucleus, plastid	76.42	12.76
VIT_12s0057g00980.t01	Wine grape	cytosol, plastid	54.59	11.18
TraesCS5B01G396200.1	Wheat	plastid	55.02	10.94
Solyc07g045480.2.1	Tomato	plastid	51.09	10.47
PGSC0003DMT400044822	Potato	plastid	51.09	10.45
AT5G35840.1	Thale cress	mitochondrion	45.85	9.45
CDY38546	Canola	cytosol, plastid	43.67	8.95
Bra039485.1-P	Field mustard	cytosol, plastid	43.23	8.86
CDY06455	Canola	cytosol, mitochondrion, nucleus, plastid	43.23	8.86
Os03t0309200-01	Rice	nucleus, plasma membrane	35.37	7.23
Os03t0719800-01	Rice	plastid	29.26	5.94
Zm00001d018728_P001	Maize	cytosol, mitochondrion	0.87	0.94
Zm00001d012117_P001	Maize	cytosol	0.44	0.68
Zm00001d022520_P001	Maize	cytosol	0.44	0.68
GSMUA_Achr4P32940_001	Banana	cytosol	0.0	0.0
Zm00001d050162_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.565.10	MapMan:35.1	UniProt:A0A0P0W3E4	ProteinID:BAS86421.1	GO:GO:0000155	GO:GO:0000160
GO:GO:0003674	GO:GO:0003824	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009584	GO:GO:0009585
GO:GO:0009605	GO:GO:0009628	GO:GO:0009881	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0017006	GO:GO:0018298	GO:GO:0019538	GO:GO:0023014	GO:GO:0038023	GO:GO:0042803
InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:His_kinase_dom	InterPro:IPR005467	InterPro:IPR036890	EnsemblPlantsGene:Os03g0752100
EnsemblPlants:Os03t0752100-01	PFAM:PF02518	PFscan:PS50109	PANTHER:PTHR43719	PANTHER:PTHR43719:SF4	SMART:SM00387
SUPFAM:SSF55874	UniParc:UPI000393AA3F	:	:	:	:

Description

PHYTOCHROME CSimilar to Phytochrome C. (Os03t0752100-01)

Coordinates

chr3:+:31007495..31009781

Molecular Weight (calculated)

25847.1 Da

IEP (calculated)

4.852

GRAVY (calculated)

-0.243

Length

229 amino acids

Sequence
(BLAST)

001: GERPWYSDQT SRNLLEPSDL TEEQRKLLAS NVLCQEQLKK ILHDTDLESI EQCYTEMSTV DFNLEEALNT VLMQAMPQSK EKQISIDRDW PAEVSCMHLC
101: GDNLRLQQVL ADFLACMLQF TQPAEGPIVL QVIPRMENIG SGMQIAHLEF RLVHPAPGVP EALIQEMFRH SPGASREGLG LYISQKLVKT MSGTVQYLRE
201: SESSSFIVLV EFPVAQLSTK RCKASTSKF

Best Arabidopsis Sequence Match ( AT5G35840.1 )
(BLAST)

0001: MSSNTSRSCS TRSRQNSRVS SQVLVDAKLH GNFEESERLF DYSASINLNM PSSSCEIPSS AVSTYLQKIQ RGMLIQPFGC LIVVDEKNLK VIAFSENTQE
0101: MLGLIPHTVP SMEQREALTI GTDVKSLFLS PGCSALEKAV DFGEISILNP ITLHCRSSSK PFYAILHRIE EGLVIDLEPV SPDEVPVTAA GALRSYKLAA
0201: KSISRLQALP SGNMLLLCDA LVKEVSELTG YDRVMVYKFH EDGHGEVIAE CCREDMEPYL GLHYSATDIP QASRFLFMRN KVRMICDCSA VPVKVVQDKS
0301: LSQPISLSGS TLRAPHGCHA QYMSNMGSVA SLVMSVTING SDSDEMNRDL QTGRHLWGLV VCHHASPRFV PFPLRYACEF LTQVFGVQIN KEAESAVLLK
0401: EKRILQTQSV LCDMLFRNAP IGIVTQSPNI MDLVKCDGAA LYYRDNLWSL GVTPTETQIR DLIDWVLKSH GGNTGFTTES LMESGYPDAS VLGESICGMA
0501: AVYISEKDFL FWFRSSTAKQ IKWGGARHDP NDRDGKRMHP RSSFKAFMEI VRWKSVPWDD MEMDAINSLQ LIIKGSLQEE HSKTVVDVPL VDNRVQKVDE
0601: LCVIVNEMVR LIDTAAVPIF AVDASGVING WNSKAAEVTG LAVEQAIGKP VSDLVEDDSV ETVKNMLALA LEGSEERGAE IRIRAFGPKR KSSPVELVVN
0701: TCCSRDMTNN VLGVCFIGQD VTGQKTLTEN YSRVKGDYAR IMWSPSTLIP PIFITNENGV CSEWNNAMQK LSGIKREEVV NKILLGEVFT TDDYGCCLKD
0801: HDTLTKLRIG FNAVISGQKN IEKLLFGFYH RDGSFIEALL SANKRTDIEG KVTGVLCFLQ VPSPELQYAL QVQQISEHAI ACALNKLAYL RHEVKDPEKA
0901: ISFLQDLLHS SGLSEDQKRL LRTSVLCREQ LAKVISDSDI EGIEEGYVEL DCSEFGLQES LEAVVKQVME LSIERKVQIS CDYPQEVSSM RLYGDNLRLQ
1001: QILSETLLSS IRFTPALRGL CVSFKVIARI EAIGKRMKRV ELEFRIIHPA PGLPEDLVRE MFQPLRKGTS REGLGLHITQ KLVKLMERGT LRYLRESEMS
1101: AFVILTEFPL I

Arabidopsis Description

PHYCPhytochrome C [Source:UniProtKB/Swiss-Prot;Acc:P14714]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.