Factsheet for HORVU0Hr1G023250.4

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G068750.7	Barley	cytosol	97.99	96.06
GSMUA_Achr5P27310_001	Banana	cytosol	19.83	44.52
TraesCS4B01G052000.1	Wheat	mitochondrion	90.23	35.48
HORVU4Hr1G008610.2	Barley	mitochondrion	94.54	29.11
TraesCS4D01G052200.1	Wheat	plastid	91.38	28.04
TraesCS4A01G262900.1	Wheat	mitochondrion	89.66	27.61
OQU91090	Sorghum	nucleus	82.47	25.38
Os03t0719800-01	Rice	plastid	82.18	25.35
Zm00001d033799_P001	Maize	cytosol	81.9	25.2
Zm00001d013402_P005	Maize	nucleus	81.61	25.11
VIT_14s0060g00100.t01	Wine grape	nucleus	68.68	21.26
Bra031672.1-P	Field mustard	cytosol, plastid	68.1	21.14
CDY06362	Canola	cytosol, plastid	67.82	21.05
CDY22632	Canola	cytosol, plastid	67.82	21.02
AT1G09570.3	Thale cress	cytosol	67.53	20.87
KRG90417	Soybean	nucleus	67.24	20.84
Solyc10g044670.1.1	Tomato	extracellular	67.24	20.84
KRG96653	Soybean	nucleus	67.53	20.8
PGSC0003DMT400040772	Potato	cytosol	66.95	20.75
CDY50896	Canola	endoplasmic reticulum, plastid, vacuole	66.95	20.07
GSMUA_Achr8P06130_001	Banana	cytosol, mitochondrion	60.63	19.63
KRH33709	Soybean	endoplasmic reticulum, golgi, plastid	66.67	19.48
CDX93501	Canola	cytosol	66.95	19.38
Bra020013.1-P	Field mustard	cytosol	66.67	19.17
HORVU5Hr1G095530.2	Barley	plastid	61.78	18.74
KRH68382	Soybean	endoplasmic reticulum, plastid, vacuole	51.72	18.48
HORVU4Hr1G053400.1	Barley	plasma membrane	58.91	17.55
Zm00001d008542_P001	Maize	cytosol	2.3	3.31
OQU91089	Sorghum	cytosol	0.0	0.0

Protein Annotations

MapMan:26.1.1.1	Gene3D:3.30.450.270	Gene3D:3.30.450.40	UniProt:A0A287E861	InterPro:GAF	InterPro:GAF-like_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009584	GO:GO:0009605	GO:GO:0009628
GO:GO:0009987	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:HORVU0Hr1G023250	EnsemblPlants:HORVU0Hr1G023250.4	InterPro:IPR016132
InterPro:IPR029016	PFAM:PF00360	PFAM:PF01590	PRINTS:PR01033	PFscan:PS50046	PANTHER:PTHR43719
PANTHER:PTHR43719:SF13	InterPro:Phyto_chromo_attachment	InterPro:Phytochrome	InterPro:Phytochrome_cen-reg	SMART:SM00065	SUPFAM:SSF55781
UniParc:UPI000B47A21A	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchrUn:+:117128574..117131657

Molecular Weight (calculated)

39386.6 Da

IEP (calculated)

5.577

GRAVY (calculated)

-0.149

Length

348 amino acids

Sequence
(BLAST)

001: MELLCNTVVK EVFELTGYDR VMAYKFHEDN HGEVFAEITK PSLEPYLGMH YPATDIPQAA RFMFMKNKVR MICDVRARTL KVIEDEALPF DISLCGSSLR
101: AAHSCHLQYM ENMNSIASLV MAVVVNESEE DDETESEQPA QQQKKKILWG LLICHHESPK YVPFPLRYAC ELLAQVFVVH VNKEFEVQKQ LREKSILRMQ
201: TILCDMLFKE ASPLTIVLGT PNIMDLIKCD GAALLYGDKV WRLGNAPTES QICHIALCLS EVHMDSTGLS TESLHDAGYP GASALGDMVC GIAVAKINSN
301: DILFWFRSQT AEEIRWGGAK NDPSDQDDSR RMHPRLSFKA FLMNFTRP

Best Arabidopsis Sequence Match ( AT1G09570.1 )
(BLAST)

0001: MSGSRPTQSS EGSRRSRHSA RIIAQTTVDA KLHADFEESG SSFDYSTSVR VTGPVVENQP PRSDKVTTTY LHHIQKGKLI QPFGCLLALD EKTFKVIAYS
0101: ENASELLTMA SHAVPSVGEH PVLGIGTDIR SLFTAPSASA LQKALGFGDV SLLNPILVHC RTSAKPFYAI IHRVTGSIII DFEPVKPYEV PMTAAGALQS
0201: YKLAAKAITR LQSLPSGSME RLCDTMVQEV FELTGYDRVM AYKFHEDDHG EVVSEVTKPG LEPYLGLHYP ATDIPQAARF LFMKNKVRMI VDCNAKHARV
0301: LQDEKLSFDL TLCGSTLRAP HSCHLQYMAN MDSIASLVMA VVVNEEDGEG DAPDATTQPQ KRKRLWGLVV CHNTTPRFVP FPLRYACEFL AQVFAIHVNK
0401: EVELDNQMVE KNILRTQTLL CDMLMRDAPL GIVSQSPNIM DLVKCDGAAL LYKDKIWKLG TTPSEFHLQE IASWLCEYHM DSTGLSTDSL HDAGFPRALS
0501: LGDSVCGMAA VRISSKDMIF WFRSHTAGEV RWGGAKHDPD DRDDARRMHP RSSFKAFLEV VKTRSLPWKD YEMDAIHSLQ LILRNAFKDS ETTDVNTKVI
0601: YSKLNDLKID GIQELEAVTS EMVRLIETAT VPILAVDSDG LVNGWNTKIA ELTGLSVDEA IGKHFLTLVE DSSVEIVKRM LENALEGTEE QNVQFEIKTH
0701: LSRADAGPIS LVVNACASRD LHENVVGVCF VAHDLTGQKT VMDKFTRIEG DYKAIIQNPN PLIPPIFGTD EFGWCTEWNP AMSKLTGLKR EEVIDKMLLG
0801: EVFGTQKSCC RLKNQEAFVN LGIVLNNAVT SQDPEKVSFA FFTRGGKYVE CLLCVSKKLD REGVVTGVFC FLQLASHELQ QALHVQRLAE RTAVKRLKAL
0901: AYIKRQIRNP LSGIMFTRKM IEGTELGPEQ RRILQTSALC QKQLSKILDD SDLESIIEGC LDLEMKEFTL NEVLTASTSQ VMMKSNGKSV RITNETGEEV
1001: MSDTLYGDSI RLQQVLADFM LMAVNFTPSG GQLTVSASLR KDQLGRSVHL ANLEIRLTHT GAGIPEFLLN QMFGTEEDVS EEGLSLMVSR KLVKLMNGDV
1101: QYLRQAGKSS FIITAELAAA NK

Arabidopsis Description

PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.