Factsheet for VIT_10s0003g02680.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0077g00940.t01
VIT_10s0003g02680.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18130.1	VIT_05s0077g00940.t01	AT2G18790.1	15273290
AT4G18130.1	VIT_05s0077g00940.t01	AT2G18790.1	19286967
AT4G18130.1	VIT_05s0077g00940.t01	AT4G16250.1	15273290
AT4G18130.1	VIT_05s0077g00940.t01	AT4G16250.1	19286967
AT4G18130.1	VIT_10s0003g02680.t01	AT4G18130.1	15273290

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37778	Soybean	nucleus	72.11	67.86
KRH12820	Soybean	cytosol	68.98	66.21
PGSC0003DMT400007944	Potato	cytosol, plastid	70.68	65.58
Solyc02g071260.2.1	Tomato	cytosol, plastid	70.11	65.0
AT4G18130.1	Thale cress	cytosol	65.84	62.41
CDX78827	Canola	cytosol	63.95	62.41
Bra013286.1-P	Field mustard	cytosol	65.46	61.94
VIT_05s0077g00940.t01	Wine grape	cytosol	66.22	61.82
CDY61670	Canola	cytosol	65.28	61.65
VIT_12s0057g00980.t01	Wine grape	cytosol, plastid	53.32	50.27
VIT_14s0060g00100.t01	Wine grape	nucleus	51.61	48.4

Protein Annotations

EntrezGene:100264019	wikigene:100264019	MapMan:26.1.1.1	MapMan:26.4.1.2	Gene3D:3.30.450.20	Gene3D:3.30.450.270
Gene3D:3.30.450.40	Gene3D:3.30.565.10	ProteinID:ACC60968	ProteinID:ACC60968.1	EMBL:AM432430	ProteinID:CAN62723
ProteinID:CAN62723.1	ProteinID:CCB55756	ProteinID:CCB55756.1	ncoils:Coil	EMBL:EU436652	UniProt:F6HMG7
EMBL:FN595992	InterPro:GAF	InterPro:GAF-like_dom_sf	GO:GO:0000155	GO:GO:0000160	GO:GO:0003674
GO:GO:0003824	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009584	GO:GO:0009585
GO:GO:0009605	GO:GO:0009628	GO:GO:0009881	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0017006	GO:GO:0018298	GO:GO:0019538	GO:GO:0023014	GO:GO:0038023	GO:GO:0042803
GO:GO:0050896	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HisK_dim/P	InterPro:His_kinase_dom	InterPro:IPR000014
InterPro:IPR000700	InterPro:IPR005467	InterPro:IPR016132	InterPro:IPR029016	InterPro:IPR036890	InterPro:PAS
InterPro:PAS-assoc_C	InterPro:PAS-like_dom_sf	InterPro:PAS_2	InterPro:PAS_fold	PFAM:PF00360	PFAM:PF00512
PFAM:PF00989	PFAM:PF01590	PFAM:PF02518	PFAM:PF08446	EntrezGene:PHYE	wikigene:PHYE
PRINTS:PR01033	ScanProsite:PS00245	PFscan:PS50046	PFscan:PS50109	PFscan:PS50112	PFscan:PS50113
PANTHER:PTHR43719	PANTHER:PTHR43719:SF17	InterPro:Phyto_chromo_BS	InterPro:Phyto_chromo_attachment	InterPro:Phytochrome	InterPro:Phytochrome_cen-reg
SMART:SM00065	SMART:SM00091	SMART:SM00387	SMART:SM00388	SUPFAM:SSF55781	SUPFAM:SSF55785
SUPFAM:SSF55874	SignalP:SignalP-noTM	TIGRFAMs:TIGR00229	UniParc:UPI0002108B14	ArrayExpress:VIT_10s0003g02680	EnsemblPlantsGene:VIT_10s0003g02680
EnsemblPlants:VIT_10s0003g02680.t01	unigene:Vvi.22972	RefSeq:XP_002271671	RefSeq:XP_002271671.1	:	:

Description

No Description!

Coordinates

chr10:-:4672679..4682998

Molecular Weight (calculated)

117501.0 Da

IEP (calculated)

6.219

GRAVY (calculated)

-0.080

Length

1054 amino acids

Sequence
(BLAST)

0001: MRMLGFWLSL SSLVSPRGGL VQPFGCMLAI EEPTFRIISY SENSMDFLGL NTLSETTQLK SLIGVDVRTL FTPPSSASLA KAAMSREISL LNPIWVHSRS
0101: AQKTFYAILH RIDVGIVIDL EPTRSGDSAL SLAGAVQSQK LAVRAISRLQ SLPGGDIGVL CDTVVEDVQK LTGYDRVMVY KFHDDDHGEV VSEIRRSDLE
0201: PYLGLHYPAT DIPQAARFLF KQNRVRIICD CNAKAVRVIQ SEELKQPLCL VNSTLRSPHG CHLQYMFNMG CIASLAMAVV INGNDATKLW GLVVCHHTSP
0301: RYVPFPLRYA CEFLMQAFGL QLYMELQLAS QLAEKKILRM QTLLCDMLLR EAPLGIVTHS PSIMDLLKCD GAALYYGGRC WLLGVTPTES QVKDIAEWLL
0401: TEHGDSTGLS TDSLADAGYP GAALLGDAVC GMATARITSK DFLLWFRSHT AKEVKWGGAK HHPEDKDDGG RMHPRSSFKA FLEVVKSRSL PWEVSDINAI
0501: HSLQLIMRDS FQDIEDSSGK VMVHTQKYDS EMQGLNELGS VACEMVKLIE TATAPIFGVD SSGCINGWNA KIAELTGLQA KEAMGKSLVD EIVHEDLRGA
0601: VDNLLCRALQ GKEDKNVELK LKNFGLNQQD SALYIVVNAC TSRDYTNDIV GVCFVGQDIT SEKIVMDKFI RLQGDYKAIV QCLNPLIPPI FASDGNACCS
0701: EWNTSLEKLT GCMRHEVIRK MLPGEVFGGL CPLKSQDTLT RFTILLYQAI SGQDTEKFPF GFFDKSGKLV EVLLTANKRT DANGNVIGCF CFLQIDTPDK
0801: HQGLGHGPEY RECFSKFKEL AYIRQEMKNP LNGIRFTHKL LETTATSVYQ KQFLETSEAC ERQMMSIIAD IDMGIIEEGS MELNVEEFLL GNVLDAVVSQ
0901: VMMLLKEKKL QLVCEIPEEI KTLPLSGDQI KLQQVLSDFL HNIVHHAPSS DGWIEIKIST GLKMIQDFNE FVHLQFRMTH IGQGLPPDLI QDMFEGGDQW
1001: NTQEGLGLNL SRKLLSAMNG RVQYVREHGK CYFLVDIDLK NRRAREKGKQ IQVR

Best Arabidopsis Sequence Match ( AT4G18130.1 )
(BLAST)

0001: MGFESSSSAA SNMKPQPQKS NTAQYSVDAA LFADFAQSIY TGKSFNYSKS VISPPNHVPD EHITAYLSNI QRGGLVQPFG CLIAVEEPSF RILGLSDNSS
0101: DFLGLLSLPS TSHSGEFDKV KGLIGIDART LFTPSSGASL SKAASFTEIS LLNPVLVHSR TTQKPFYAIL HRIDAGIVMD LEPAKSGDPA LTLAGAVQSQ
0201: KLAVRAISRL QSLPGGDIGA LCDTVVEDVQ RLTGYDRVMV YQFHEDDHGE VVSEIRRSDL EPYLGLHYPA TDIPQAARFL FKQNRVRMIC DCNATPVKVV
0301: QSEELKRPLC LVNSTLRAPH GCHTQYMANM GSVASLALAI VVKGKDSSKL WGLVVGHHCS PRYVPFPLRY ACEFLMQAFG LQLQMELQLA SQLAEKKAMR
0401: TQTLLCDMLL RDTVSAIVTQ SPGIMDLVKC DGAALYYKGK CWLVGVTPNE SQVKDLVNWL VENHGDDSTG LTTDSLVDAG YPGAISLGDA VCGVAAAGFS
0501: SKDYLLWFRS NTASAIKWGG AKHHPKDKDD AGRMHPRSSF TAFLEVAKSR SLPWEISEID AIHSLRLIMR ESFTSSRPVL SGNGVARDAN ELTSFVCEMV
0601: RVIETATAPI FGVDSSGCIN GWNKKTAEMT GLLASEAMGK SLADEIVQEE SRAALESLLC KALQGEEEKS VMLKLRKFGQ NNHPDYSSDV CVLVNSCTSR
0701: DYTENIIGVC FVGQDITSEK AITDRFIRLQ GDYKTIVQSL NPLIPPIFAS DENACCSEWN AAMEKLTGWS KHEVIGKMLP GEVFGVFCKV KCQDSLTKFL
0801: ISLYQGIAGD NVPESSLVEF FNKEGKYIEA SLTANKSTNI EGKVIRCFFF LQIINKESGL SCPELKESAQ SLNELTYVRQ EIKNPLNGIR FAHKLLESSE
0901: ISASQRQFLE TSDACEKQIT TIIESTDLKS IEEGKLQLET EEFRLENILD TIISQVMIIL RERNSQLRVE VAEEIKTLPL NGDRVKLQLI LADLLRNIVN
1001: HAPFPNSWVG ISISPGQELS RDNGRYIHLQ FRMIHPGKGL PSEMLSDMFE TRDGWVTPDG LGLKLSRKLL EQMNGRVSYV REDERCFFQV DLQVKTMLGV
1101: ESRGTEGSSS IK

Arabidopsis Description

PHYEPhytochrome E [Source:UniProtKB/Swiss-Prot;Acc:P42498]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.