Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- vacuole 1
- cytosol 2
- nucleus 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400007944 | |
| PGSC0003DMT400061712 | |
| PGSC0003DMT400069974 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g071260.2.1 | Tomato | cytosol, plastid | 93.75 | 93.67 |
| VIT_10s0003g02680.t01 | Wine grape | vacuole | 65.58 | 70.68 |
| KRH37778 | Soybean | nucleus | 67.69 | 68.66 |
| KRH12820 | Soybean | cytosol | 64.79 | 67.03 |
| CDX78827 | Canola | cytosol | 58.36 | 61.39 |
| CDY61670 | Canola | cytosol | 60.21 | 61.29 |
| AT4G18130.1 | Thale cress | cytosol | 59.77 | 61.06 |
| Bra013286.1-P | Field mustard | cytosol | 59.86 | 61.04 |
| PGSC0003DMT400061712 | Potato | cytosol, plastid | 59.68 | 60.0 |
| PGSC0003DMT400069974 | Potato | mitochondrion | 57.13 | 57.69 |
| PGSC0003DMT400044822 | Potato | plastid | 48.33 | 49.02 |
| PGSC0003DMT400040772 | Potato | cytosol | 47.89 | 48.44 |
Protein Annotations
| Gene3D:1.10.287.130 | EntrezGene:102588382 | MapMan:26.1.1.1 | MapMan:26.4.1.2 | Gene3D:3.30.450.20 | Gene3D:3.30.450.270 |
| Gene3D:3.30.450.40 | Gene3D:3.30.565.10 | ncoils:Coil | InterPro:GAF | InterPro:GAF-like_dom_sf | GO:GO:0000155 |
| GO:GO:0000160 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004871 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009584 | GO:GO:0009585 | GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009881 | GO:GO:0009987 |
| GO:GO:0016301 | GO:GO:0016740 | GO:GO:0017006 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0023014 |
| GO:GO:0038023 | GO:GO:0042803 | GO:GO:0050896 | InterPro:HATPase_C | InterPro:HATPase_C_sf | InterPro:HisK_dim/P |
| InterPro:His_kinase_dom | InterPro:IPR000014 | InterPro:IPR000700 | InterPro:IPR005467 | InterPro:IPR016132 | InterPro:IPR029016 |
| InterPro:IPR036890 | UniProt:M0ZTS8 | InterPro:PAS | InterPro:PAS-assoc_C | InterPro:PAS-like_dom_sf | InterPro:PAS_2 |
| InterPro:PAS_fold | PFAM:PF00360 | PFAM:PF00512 | PFAM:PF00989 | PFAM:PF01590 | PFAM:PF02518 |
| PFAM:PF08446 | EnsemblPlantsGene:PGSC0003DMG400003072 | PGSC:PGSC0003DMG400003072 | EnsemblPlants:PGSC0003DMT400007944 | PIRSF:PIRSF000084 | PRINTS:PR01033 |
| ScanProsite:PS00245 | PFscan:PS50046 | PFscan:PS50109 | PFscan:PS50112 | PFscan:PS50113 | PANTHER:PTHR43719 |
| PANTHER:PTHR43719:SF17 | InterPro:Phyto_chromo_BS | InterPro:Phyto_chromo_attachment | InterPro:Phytochrome | InterPro:Phytochrome_A-E | InterPro:Phytochrome_cen-reg |
| SMART:SM00065 | SMART:SM00091 | SMART:SM00387 | SMART:SM00388 | SUPFAM:SSF55781 | SUPFAM:SSF55785 |
| SUPFAM:SSF55874 | TIGRFAMs:TIGR00229 | UniParc:UPI0002947FBD | RefSeq:XP_006355589.1 | SEG:seg | : |
Description
Phytochrome E [Source:PGSC_GENE;Acc:PGSC0003DMG400003072]
Coordinates
chr2:+:30472507..30477797
Molecular Weight (calculated)
126048.0 Da
IEP (calculated)
5.603
GRAVY (calculated)
-0.227
Length
1136 amino acids
Sequence
(BLAST)
(BLAST)
0001: MESQSSKNRR GGRTSMNQNN QNNNKDSGFS TSSAASNMKN NASKAALAQY NADAKLMAEF EQSSVSGKSF DYSKSVPYPP QETNEEEITS YLSRIQRGGL
0101: VQPFGCMVAI EEPTFKIIGY SENCFDMLGF NPTKMKLGLI GVDARTLFTP SSGDSLAKVM ASREISLLNP IWVHSRTTHK PFYAILHRID VGIVIDLEPA
0201: NSSDPALLLA GAVQSQKLAV RSISRLQSLP GGDIGVLCDT AVEDVQKLTG YDRVMVYKFH DDNHGEIVSE IRRSDLEPYL GLHYPATDIP QAARFLFKQN
0301: RVRMICDCNA QPVKVVQSEE LKQPICLVNS TLRSPHECHS KYMANMGSIS SLVMAVLINS GDSMKLWGLI VCHHTSPRYV PFPLRYACEF FTQAFGLQLN
0401: MELQLASQLA EKKTLQMQTL LCDMLLRDVP FGVVTQSPSI MDLVKCDGAA LYSGGKCWLL GVTPTEAQVK DIAQWLLVAH KDSTGLSTDC LADAGYPGAA
0501: LLGDSVCGMA TARITSKDFL FWFRSHTAKE VKWGGAKHHP DDKDDGGKMH PRSSFNAFLE VVKSRSLPWE IPEINAIHSL QIIMRESIQE NENSSLKTLT
0601: TSQQNDADGP SMDELSSVAM EMVRLIETAT APIFGVDPSG LINGWNEKIA DLTGLHASEA VGMSLINDIT HEDSCGTVEN VLHRALLGEE EKNVEIKLRR
0701: FGKNPPGSVI YLVTNTCTSR DHKNGVVGVC FVAQDVTPEK SVMDKFIQLR GDYEAIVQSL SPLIPPIFAS DENACCSEWN AAMERLTGWT KYEVMGRTLP
0801: GEVFGGLCRL TGQDALTKFM ILFYQAISGH ETKKLPFGFF NRTGEFVEVF LTANKRTDEH GNICGCFCFL QPTTVDPEAS DQRQDYKDSL SKFKEYAYVL
0901: QQMKNPLNGI QFTHKLLEAT GVSDNQKQLL ETSEACEKQI LSVIDNMDFG GIEDGSKVEL NMEEFVLGNV VDAIVSQVMI FLKEKNLQLL HDIPDHIKTL
1001: PLYGDQIKLQ RVLSDFLLSV VHHAPSPDGW VEIKVLPGLK LIQDGNELIH LQFRMTHPGQ GLPAALIDDM SGERNRWTTQ EGIALNVSQK LLNVMNGHVR
1101: YVREEDKCYF LIDVELQTSK PTQHGPKLEA TQEMEI
0101: VQPFGCMVAI EEPTFKIIGY SENCFDMLGF NPTKMKLGLI GVDARTLFTP SSGDSLAKVM ASREISLLNP IWVHSRTTHK PFYAILHRID VGIVIDLEPA
0201: NSSDPALLLA GAVQSQKLAV RSISRLQSLP GGDIGVLCDT AVEDVQKLTG YDRVMVYKFH DDNHGEIVSE IRRSDLEPYL GLHYPATDIP QAARFLFKQN
0301: RVRMICDCNA QPVKVVQSEE LKQPICLVNS TLRSPHECHS KYMANMGSIS SLVMAVLINS GDSMKLWGLI VCHHTSPRYV PFPLRYACEF FTQAFGLQLN
0401: MELQLASQLA EKKTLQMQTL LCDMLLRDVP FGVVTQSPSI MDLVKCDGAA LYSGGKCWLL GVTPTEAQVK DIAQWLLVAH KDSTGLSTDC LADAGYPGAA
0501: LLGDSVCGMA TARITSKDFL FWFRSHTAKE VKWGGAKHHP DDKDDGGKMH PRSSFNAFLE VVKSRSLPWE IPEINAIHSL QIIMRESIQE NENSSLKTLT
0601: TSQQNDADGP SMDELSSVAM EMVRLIETAT APIFGVDPSG LINGWNEKIA DLTGLHASEA VGMSLINDIT HEDSCGTVEN VLHRALLGEE EKNVEIKLRR
0701: FGKNPPGSVI YLVTNTCTSR DHKNGVVGVC FVAQDVTPEK SVMDKFIQLR GDYEAIVQSL SPLIPPIFAS DENACCSEWN AAMERLTGWT KYEVMGRTLP
0801: GEVFGGLCRL TGQDALTKFM ILFYQAISGH ETKKLPFGFF NRTGEFVEVF LTANKRTDEH GNICGCFCFL QPTTVDPEAS DQRQDYKDSL SKFKEYAYVL
0901: QQMKNPLNGI QFTHKLLEAT GVSDNQKQLL ETSEACEKQI LSVIDNMDFG GIEDGSKVEL NMEEFVLGNV VDAIVSQVMI FLKEKNLQLL HDIPDHIKTL
1001: PLYGDQIKLQ RVLSDFLLSV VHHAPSPDGW VEIKVLPGLK LIQDGNELIH LQFRMTHPGQ GLPAALIDDM SGERNRWTTQ EGIALNVSQK LLNVMNGHVR
1101: YVREEDKCYF LIDVELQTSK PTQHGPKLEA TQEMEI
0001: MGFESSSSAA SNMKPQPQKS NTAQYSVDAA LFADFAQSIY TGKSFNYSKS VISPPNHVPD EHITAYLSNI QRGGLVQPFG CLIAVEEPSF RILGLSDNSS
0101: DFLGLLSLPS TSHSGEFDKV KGLIGIDART LFTPSSGASL SKAASFTEIS LLNPVLVHSR TTQKPFYAIL HRIDAGIVMD LEPAKSGDPA LTLAGAVQSQ
0201: KLAVRAISRL QSLPGGDIGA LCDTVVEDVQ RLTGYDRVMV YQFHEDDHGE VVSEIRRSDL EPYLGLHYPA TDIPQAARFL FKQNRVRMIC DCNATPVKVV
0301: QSEELKRPLC LVNSTLRAPH GCHTQYMANM GSVASLALAI VVKGKDSSKL WGLVVGHHCS PRYVPFPLRY ACEFLMQAFG LQLQMELQLA SQLAEKKAMR
0401: TQTLLCDMLL RDTVSAIVTQ SPGIMDLVKC DGAALYYKGK CWLVGVTPNE SQVKDLVNWL VENHGDDSTG LTTDSLVDAG YPGAISLGDA VCGVAAAGFS
0501: SKDYLLWFRS NTASAIKWGG AKHHPKDKDD AGRMHPRSSF TAFLEVAKSR SLPWEISEID AIHSLRLIMR ESFTSSRPVL SGNGVARDAN ELTSFVCEMV
0601: RVIETATAPI FGVDSSGCIN GWNKKTAEMT GLLASEAMGK SLADEIVQEE SRAALESLLC KALQGEEEKS VMLKLRKFGQ NNHPDYSSDV CVLVNSCTSR
0701: DYTENIIGVC FVGQDITSEK AITDRFIRLQ GDYKTIVQSL NPLIPPIFAS DENACCSEWN AAMEKLTGWS KHEVIGKMLP GEVFGVFCKV KCQDSLTKFL
0801: ISLYQGIAGD NVPESSLVEF FNKEGKYIEA SLTANKSTNI EGKVIRCFFF LQIINKESGL SCPELKESAQ SLNELTYVRQ EIKNPLNGIR FAHKLLESSE
0901: ISASQRQFLE TSDACEKQIT TIIESTDLKS IEEGKLQLET EEFRLENILD TIISQVMIIL RERNSQLRVE VAEEIKTLPL NGDRVKLQLI LADLLRNIVN
1001: HAPFPNSWVG ISISPGQELS RDNGRYIHLQ FRMIHPGKGL PSEMLSDMFE TRDGWVTPDG LGLKLSRKLL EQMNGRVSYV REDERCFFQV DLQVKTMLGV
1101: ESRGTEGSSS IK
0101: DFLGLLSLPS TSHSGEFDKV KGLIGIDART LFTPSSGASL SKAASFTEIS LLNPVLVHSR TTQKPFYAIL HRIDAGIVMD LEPAKSGDPA LTLAGAVQSQ
0201: KLAVRAISRL QSLPGGDIGA LCDTVVEDVQ RLTGYDRVMV YQFHEDDHGE VVSEIRRSDL EPYLGLHYPA TDIPQAARFL FKQNRVRMIC DCNATPVKVV
0301: QSEELKRPLC LVNSTLRAPH GCHTQYMANM GSVASLALAI VVKGKDSSKL WGLVVGHHCS PRYVPFPLRY ACEFLMQAFG LQLQMELQLA SQLAEKKAMR
0401: TQTLLCDMLL RDTVSAIVTQ SPGIMDLVKC DGAALYYKGK CWLVGVTPNE SQVKDLVNWL VENHGDDSTG LTTDSLVDAG YPGAISLGDA VCGVAAAGFS
0501: SKDYLLWFRS NTASAIKWGG AKHHPKDKDD AGRMHPRSSF TAFLEVAKSR SLPWEISEID AIHSLRLIMR ESFTSSRPVL SGNGVARDAN ELTSFVCEMV
0601: RVIETATAPI FGVDSSGCIN GWNKKTAEMT GLLASEAMGK SLADEIVQEE SRAALESLLC KALQGEEEKS VMLKLRKFGQ NNHPDYSSDV CVLVNSCTSR
0701: DYTENIIGVC FVGQDITSEK AITDRFIRLQ GDYKTIVQSL NPLIPPIFAS DENACCSEWN AAMEKLTGWS KHEVIGKMLP GEVFGVFCKV KCQDSLTKFL
0801: ISLYQGIAGD NVPESSLVEF FNKEGKYIEA SLTANKSTNI EGKVIRCFFF LQIINKESGL SCPELKESAQ SLNELTYVRQ EIKNPLNGIR FAHKLLESSE
0901: ISASQRQFLE TSDACEKQIT TIIESTDLKS IEEGKLQLET EEFRLENILD TIISQVMIIL RERNSQLRVE VAEEIKTLPL NGDRVKLQLI LADLLRNIVN
1001: HAPFPNSWVG ISISPGQELS RDNGRYIHLQ FRMIHPGKGL PSEMLSDMFE TRDGWVTPDG LGLKLSRKLL EQMNGRVSYV REDERCFFQV DLQVKTMLGV
1101: ESRGTEGSSS IK
Arabidopsis Description
PHYEPhytochrome E [Source:UniProtKB/Swiss-Prot;Acc:P42498]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.