Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45853 | Canola | cytosol | 86.16 | 88.6 |
| AT1G68790.1 | Thale cress | nucleus | 65.41 | 59.26 |
| CDY67849 | Canola | cytosol, mitochondrion, nucleus, plastid | 13.73 | 43.97 |
| CDX96106 | Canola | cytosol | 29.09 | 36.76 |
| CDY12630 | Canola | mitochondrion | 15.67 | 35.0 |
| VIT_01s0011g02810.t01 | Wine grape | mitochondrion, plastid | 40.28 | 34.71 |
| Os02t0710102-01 | Rice | nucleus | 5.7 | 33.33 |
| CDX98000 | Canola | nucleus | 38.05 | 32.05 |
| CDY19387 | Canola | nucleus | 37.23 | 31.94 |
| KRH75531 | Soybean | nucleus | 30.52 | 30.99 |
| CDY01790 | Canola | cytosol, mitochondrion, nucleus, plastid | 33.57 | 30.08 |
| KRH70636 | Soybean | nucleus | 36.62 | 29.75 |
| CDY12631 | Canola | golgi, mitochondrion, nucleus, plastid | 28.59 | 29.0 |
| CDY46040 | Canola | cytosol | 31.74 | 28.65 |
| GSMUA_Achr9P21820_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 6.51 | 26.78 |
| GSMUA_Achr8P14400_001 | Banana | cytosol | 31.33 | 25.6 |
| CDY67848 | Canola | nucleus | 19.63 | 25.0 |
| KXG30901 | Sorghum | mitochondrion, nucleus | 28.99 | 24.65 |
| Zm00001d051600_P004 | Maize | nucleus | 28.99 | 24.42 |
| HORVU6Hr1G069560.1 | Barley | nucleus | 28.18 | 24.17 |
| TraesCS6D01G256200.1 | Wheat | nucleus | 28.18 | 24.13 |
| TraesCS6B01G303400.1 | Wheat | nucleus | 28.08 | 24.13 |
| GSMUA_Achr11P... | Banana | nucleus | 31.03 | 23.55 |
| CDY45628 | Canola | nucleus, plastid | 20.85 | 20.44 |
| GSMUA_Achr3P28980_001 | Banana | mitochondrion | 21.26 | 20.35 |
| GSMUA_Achr6P09340_001 | Banana | cytosol | 31.74 | 19.54 |
| CDY60978 | Canola | nucleus, plastid | 22.18 | 17.91 |
| CDY08750 | Canola | nucleus | 9.87 | 17.67 |
| GSMUA_Achr9P21830_001 | Banana | nucleus | 10.07 | 14.04 |
Protein Annotations
| EnsemblPlants:CDX81542 | EnsemblPlantsGene:GSBRNA2T00135239001 | ncoils:Coil | PANTHER:PTHR31908 | PANTHER:PTHR31908:SF5 | ProteinID:CDX81542 |
| ProteinID:CDX81542.1 | SEG:seg | SUPFAM:SSF57997 | UniParc:UPI0004EE24C6 | MapMan:20.4.3.1 | : |
Description
BnaC02g18460D
Coordinates
chrLK031825:-:1290299..1294778
Molecular Weight (calculated)
113527.0 Da
IEP (calculated)
4.948
GRAVY (calculated)
-1.088
Length
983 amino acids
Sequence
(BLAST)
(BLAST)
001: MFTPQRNQFP ATDRKGKAVA FADEITTPSP PLGRFGSLSA VDDWRRFKEV GMLDEASLER KDLDALIEKN LKLEKELFDY QHNMGLLLIE KKKWTSGNEE
101: LQQAFDEANE ILKRERTSSL IALSESEKRE DSLRKALISE KQFVAELERD LKYLQQEHTE VKSTSEAKLA EANALVMGIK EKALEVDKER AIAEEKLSVI
201: NRKSSELERK LKDVETREKV LQRERLSLAT EREAHEAVFY KQREDLQEWE KKLTVEEDRL SEVKKSINHT EERSIESERA IKKKEKSLEE MQRKIDTAKS
301: ELKEREESIK MMLNDLSMKE KDFEAMKTKV DMKEKELREI EEKLVVREQM EIGKLLDDQK GVLDSRMQEF EMELEQRRIS LDEELEKKRG EIEKLQVEIS
401: HKEEQLGKTE RALEKMEERV KEKEKDLEAR LKAVKEKEEV LKTEEKKLHV ENERLLEDKE SLRKLKDEIE EIGAETTKQE SRIREENESL RITKEERLEF
501: IRQQSELKQQ IDRVKQEGEL LLKEREELKQ DKGRFEKEWE ALDEKKADIA REQKEVAEEK EKLRSLQISR VLDDVKMKKE SLEGKVTINE NISCAKKLAL
601: KEMEELEYEK FALKKERDEI SVEKKQLKKL HDELYKDVAD VDALRISLKE QRDDLYRSKD RFAVLLKKVD LCSTCRIPFH KFINSERVPD VEDGNDRKST
701: SFIGKLASAM APESSLPDDS VDTAAGNDHE PSASFSESKG AEVSLQSEIK SYKPRRGRGR GMSVRGGSQA TSDSKPSDLK VPRKRQREQG SRITESEQAD
801: GDSDEDVDSV ATGGRKKKKR QTAVPVSLAP AQSRYHLRRH RNVGTEEDKA QESTAAVEKQ ENVNGDIRTL PSPKDNLTPP QGENRENGKA ETLVEAVTQK
901: EIVKVEAEAE FKDKNTGKRP VQEDPQLEAG GSGEGKEHGG EEDDGTFSII QEENEEEIEE EDAETEHPGE ASIGKKIWVF FTT
101: LQQAFDEANE ILKRERTSSL IALSESEKRE DSLRKALISE KQFVAELERD LKYLQQEHTE VKSTSEAKLA EANALVMGIK EKALEVDKER AIAEEKLSVI
201: NRKSSELERK LKDVETREKV LQRERLSLAT EREAHEAVFY KQREDLQEWE KKLTVEEDRL SEVKKSINHT EERSIESERA IKKKEKSLEE MQRKIDTAKS
301: ELKEREESIK MMLNDLSMKE KDFEAMKTKV DMKEKELREI EEKLVVREQM EIGKLLDDQK GVLDSRMQEF EMELEQRRIS LDEELEKKRG EIEKLQVEIS
401: HKEEQLGKTE RALEKMEERV KEKEKDLEAR LKAVKEKEEV LKTEEKKLHV ENERLLEDKE SLRKLKDEIE EIGAETTKQE SRIREENESL RITKEERLEF
501: IRQQSELKQQ IDRVKQEGEL LLKEREELKQ DKGRFEKEWE ALDEKKADIA REQKEVAEEK EKLRSLQISR VLDDVKMKKE SLEGKVTINE NISCAKKLAL
601: KEMEELEYEK FALKKERDEI SVEKKQLKKL HDELYKDVAD VDALRISLKE QRDDLYRSKD RFAVLLKKVD LCSTCRIPFH KFINSERVPD VEDGNDRKST
701: SFIGKLASAM APESSLPDDS VDTAAGNDHE PSASFSESKG AEVSLQSEIK SYKPRRGRGR GMSVRGGSQA TSDSKPSDLK VPRKRQREQG SRITESEQAD
801: GDSDEDVDSV ATGGRKKKKR QTAVPVSLAP AQSRYHLRRH RNVGTEEDKA QESTAAVEKQ ENVNGDIRTL PSPKDNLTPP QGENRENGKA ETLVEAVTQK
901: EIVKVEAEAE FKDKNTGKRP VQEDPQLEAG GSGEGKEHGG EEDDGTFSII QEENEEEIEE EDAETEHPGE ASIGKKIWVF FTT
0001: MFTPQRNRWP ETDRKGKAIA FSDEIITPPP QRVLLREDDD WQKFKEVGLL DEASLERKDR DALIEKILKL EKELFDYQHN MGLLLIEKKQ WTSTNNELQQ
0101: AYDEAMEMLK REKTSNAITL NEADKREENL RKALIDEKQF VAELENDLKY WQREHSVVKS TSEAKLEEAN ALVIGMKEKA LEVDRERAIA EEKFSVMNRK
0201: SSELERKLKE VETREKVHQR EHLSLVTERE AHEAVFYKQR EDLQEWEKKL TLEEDRLSEV KRSINHREER VMENERTIEK KEKILENLQQ KISVAKSELT
0301: EKEESIKIKL NDISLKEKDF EAMKAKVDIK EKELHEFEEN LIEREQMEIG KLLDDQKAVL DSRRREFEME LEQMRRSLDE ELEGKKAEIE QLQVEISHKE
0401: EKLAKREAAL EKKEEGVKKK EKDLDARLKT VKEKEKALKA EEKKLHMENE RLLEDKECLR KLKDEIEEIG TETTKQESRI REEHESLRIT KEERVEFLRL
0501: QSELKQQIDK VKQEEELLLK EREELKQDKE RFEKEWEALD KKRANITREQ NEVAEENEKL RNLQISEKHR LKREEMTSRD NLKRELDGVK MQKESFEADM
0601: EDLEMQKRNL DMEFQRQEEA GERDFNERAR TYEKRSQEEL DNINYTKKLA QREMEEMQYE KLALEREREQ ISVRKKLLKE QEAEMHKDIT ELDVLRSSLK
0701: EKRKEFICER ERFLVFLEKL KSCSSCGEIT ENFVLSDLRL PDVEDGDKRF GKQKLKAEEA LNISPSAENS KRTSLLGKIA SKLLSISPIG KTDKVTDLGI
0801: TVKLPESSQP DDSLDRVSGE DHEPSATEQS FTDSRIQEGP EGSLQSEMKS DKPRRGRGRG RGRGKSVRGR SQATKAVSRD SKPSDGETPR KRQREQTSRI
0901: TESEQAAGDS DEGVDSITTG GRRKKRQIAV PVSQTPGQTR YQLRRHRNVG TEEDKAQASK GATEKQERVN DDIRKVPSPK ETRTPPEGEN RENGKAEVLV
1001: ETVTHEEIVT VETETVFKVN NTGKNPVEDP QLEVGGSGEI REHGEEDDEN ISMIEEENEG EEEEETERQG NDASIGKKIW VFFTT
0101: AYDEAMEMLK REKTSNAITL NEADKREENL RKALIDEKQF VAELENDLKY WQREHSVVKS TSEAKLEEAN ALVIGMKEKA LEVDRERAIA EEKFSVMNRK
0201: SSELERKLKE VETREKVHQR EHLSLVTERE AHEAVFYKQR EDLQEWEKKL TLEEDRLSEV KRSINHREER VMENERTIEK KEKILENLQQ KISVAKSELT
0301: EKEESIKIKL NDISLKEKDF EAMKAKVDIK EKELHEFEEN LIEREQMEIG KLLDDQKAVL DSRRREFEME LEQMRRSLDE ELEGKKAEIE QLQVEISHKE
0401: EKLAKREAAL EKKEEGVKKK EKDLDARLKT VKEKEKALKA EEKKLHMENE RLLEDKECLR KLKDEIEEIG TETTKQESRI REEHESLRIT KEERVEFLRL
0501: QSELKQQIDK VKQEEELLLK EREELKQDKE RFEKEWEALD KKRANITREQ NEVAEENEKL RNLQISEKHR LKREEMTSRD NLKRELDGVK MQKESFEADM
0601: EDLEMQKRNL DMEFQRQEEA GERDFNERAR TYEKRSQEEL DNINYTKKLA QREMEEMQYE KLALEREREQ ISVRKKLLKE QEAEMHKDIT ELDVLRSSLK
0701: EKRKEFICER ERFLVFLEKL KSCSSCGEIT ENFVLSDLRL PDVEDGDKRF GKQKLKAEEA LNISPSAENS KRTSLLGKIA SKLLSISPIG KTDKVTDLGI
0801: TVKLPESSQP DDSLDRVSGE DHEPSATEQS FTDSRIQEGP EGSLQSEMKS DKPRRGRGRG RGRGKSVRGR SQATKAVSRD SKPSDGETPR KRQREQTSRI
0901: TESEQAAGDS DEGVDSITTG GRRKKRQIAV PVSQTPGQTR YQLRRHRNVG TEEDKAQASK GATEKQERVN DDIRKVPSPK ETRTPPEGEN RENGKAEVLV
1001: ETVTHEEIVT VETETVFKVN NTGKNPVEDP QLEVGGSGEI REHGEEDDEN ISMIEEENEG EEEEETERQG NDASIGKKIW VFFTT
Arabidopsis Description
CRWN3Protein CROWDED NUCLEI 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA42]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.