CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037827.1-P	Field mustard	nucleus, plastid	70.42	84.68
CDY45628	Canola	nucleus, plastid	60.07	72.88
AT5G65780.2	Thale cress	plastid	59.24	70.83
AT5G65770.2	Thale cress	plastid	59.41	69.39
CDY08750	Canola	nucleus	26.13	57.92
KRH28315	Soybean	cytosol	28.59	47.28
VIT_00s0558g00020.t01	Wine grape	plastid	40.76	44.4
PGSC0003DMT400055146	Potato	plastid	34.18	44.4
KRH04371	Soybean	cytosol	37.55	43.52
KRH58169	Soybean	nucleus	37.3	43.32
Solyc02g091960.2.1	Tomato	nucleus	17.01	42.59
KRH77170	Soybean	cytosol	26.05	42.49
GSMUA_Achr6P31730_001	Banana	cytosol	31.55	33.6
HORVU3Hr1G074480.3	Barley	plasma membrane	27.28	33.4
TraesCS3D01G302500.2	Wheat	cytosol	27.36	33.33
TraesCS3A01G299200.1	Wheat	cytosol	27.53	33.17
TraesCS3B01G337300.1	Wheat	cytosol	27.28	33.17
Zm00001d043335_P006	Maize	extracellular, mitochondrion	25.8	32.27
KXG33452	Sorghum	cytosol	26.29	32.06
CDY67849	Canola	cytosol, mitochondrion, nucleus, plastid	8.05	31.92
CDX96106	Canola	cytosol	18.32	28.66
CDY12630	Canola	mitochondrion	9.29	25.68
CDY12631	Canola	golgi, mitochondrion, nucleus, plastid	18.9	23.74
CDY01790	Canola	cytosol, mitochondrion, nucleus, plastid	20.38	22.61
CDY19387	Canola	nucleus	20.95	22.25
CDX81542	Canola	nucleus	17.91	22.18
CDY45853	Canola	cytosol	17.42	22.18
CDY46040	Canola	cytosol	19.64	21.95
CDX98000	Canola	nucleus	20.87	21.77
CDY67848	Canola	nucleus	12.08	19.04

Protein Annotations

EnsemblPlants:CDY60978	EnsemblPlantsGene:GSBRNA2T00030356001	ncoils:Coil	PANTHER:PTHR31908	PANTHER:PTHR31908:SF2	ProteinID:CDY60978
ProteinID:CDY60978.1	SEG:seg	UniParc:UPI0004EE652C	UniProt:A0A078J863	MapMan:20.4.3.1	:

Description

BnaC09g50980DBnaC09g50980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J863]

Coordinates

chrLK033940:+:15627..21746

Molecular Weight (calculated)

139735.0 Da

IEP (calculated)

5.079

GRAVY (calculated)

-1.077

Length

1217 amino acids

Sequence
(BLAST)

0001: MATSSSSERV PRTPATTRLA ITPGSRVLKS PISEEIMWKR LKEAGFDEQS IKKRDKAALI AYIAKLESEV YDYQHNMGLL IMEKDDLLSK YEEVKSSVDE
0101: ADLAHRRDLS AYVSALAEAK KREESLKKDV GVAKECISSL EKTVHEIRAE CAETKVSAES KLSEGHSMIE DALKKFADAE AKMRAAEALQ AEANRYHRIA
0201: ERKLKEVESR EDDLARRLAS FKSESETRES EIVIERQTLS ERRKSLQQEH ERLLDAQASL NQREDHIFGK SQELAELQKG LESAKSTFEE ERRAFEDRKS
0301: NLEIELASLA RREEAVSERE SSLLKKEQEL LVAEEKIATK ESELIQKVLA NQEVILRKRK SDVEAELESR YKAVEDEIES KRRAWELREV DIRQREDLVG
0401: EKEHDLEVQS RALAEKEKDI TERSYNLNEK EKHLNALEED INRKTALLED EKDRLRKLDL DLQQSLISLE DKRKRVDSAT EKLEALKSET SELSILELNL
0501: KEELDDLRGQ KHELLVEADR LKVEKAKFEA EWEHIDVKRE ELRKEAEYIT RQREAFSMYL KDERDNIREE RDALRNQHKN DVEALNRERE EFMNKMVEEH
0601: SEWLSKIQRE RADFLLGIES QKRELEYCIE NKREELENAS REREKAFEQE KKLEEERIQS LKESAKKELE QVQVELKRLD VERLEIKLDR ERREREWAEL
0701: KDSVEELKVQ REKLEKQRHM LRSEREEIRH EIEELKKLEN LKVALDDMSM AKMQLSNLER SWEKVSALKQ KVELQNGVST VSNSEDGYNN SSMERQNGAS
0801: PSSAAPLSWI KRYTNRIFKT SPESPEKSPP MHHHEEERGL PSEKMKLDSS KAYTEGMSIA VERLEAGRKR RGNASGNDST GPSSNKKRKH DVTQKSPDAD
0901: PESVISSPRN VPEDKHELPP SQTETPSGTV VISETVKITK VTCETEVINK VTNIDCSENP SEAGTKMVEE RKQDSDCNQK VELQNGVSTV SNSEDGYNNS
1001: SMERQNGASP SSAAPLSWIK RYTNRIFKTS PESPEKSPPM HHHEEERGLP SEKMKLDSSK AYTEGMSIAV ERLEAGRKRR GNASGNDSTG PSSNKKRKHD
1101: VTQKSPEADP ESVISSPRNV PEDKHELPPS QTETPSGTVV ISETVKITKV TCETEVINKV TNIDCSENPS DAGAKMVEER KQDSDCNQTN VPETVTQKEV
1201: ESDNREEKDS EDGGIVT

Best Arabidopsis Sequence Match ( AT5G65770.1 )
(BLAST)

0001: MATSSRSERF PITPSTAATN RLTITPNSRV LKSPLTEEIM WKRLKDAGFD EQSIKNRDKA ALIAYIAKLE SEVYDYQHNM GLLLLEKNEL SSQYEEIKAS
0101: VDESDLTHMR EKSAYVSALA EAKKREESLK KDVGIAKECI SSLEKTLHEM RAECAETKVS AGSTMSEAHV MIEDALKKLA DAEAKMRAAE ALQAEANRYH
0201: RIAERKLKEV ESREDDLTRR LASFKSECET KENEMVIERQ TLNERRKSLQ QEHERLLDAQ VSLNQREDHI FARSQELAEL EKGLDTAKTT FEEERKAFED
0301: KKSNLEIALA LCAKREEAVS ERESSLLKKE QELLVAEEKI ASKESELIQN VLANQEVILR KRKSDVEAEL ECKSKSVEVE IESKRRAWEL REVDIKQRED
0401: LVGEKEHDLE VQSRALAEKE KDITEKSFNL DEKEKNLVAT EEDINRKTTM LEDEKERLRK LDLELQQSLT SLEDKRKRVD SATQKLEALK SETSELSTLE
0501: MKLKEELDDL RAQKLEMLAE ADRLKVEKAK FEAEWEHIDV KREELRKEAE YITRQREAFS MYLKDERDNI KEERDALRNQ HKNDVESLNR EREEFMNKMV
0601: EEHSEWLSKI QRERADFLLG IEMQKRELEY CIENKREELE NSSRDREKAF EQEKKLEEER IQSLKEMAEK ELEHVQVELK RLDAERLEIK LDRERREREW
0701: AELKDSVEEL KVQREKLETQ RHMLRAERDE IRHEIEELKK LENLKVALDD MSMAKMQLSN LERSWEKVSA LKQKVVSRDD ELDLQNGVST VSNSEDGYNS
0801: SMERQNGLTP SSATPFSWIK RCTNLIFKTS PEKSTLMHHY EEEGGVPSEK LKLESSRREE KAYTEGLSIA VERLEAGRKR RGNTSGDETS EPSNNKKRKH
0901: DVTQKYSDEA DTQSVISSPQ NVPEDKHELP SSQTQTPSGM VVISETVKIT RVTCETEVTN KVTTLDCSES PSEAGRKMGE ETEDGDCNQT GINASETVIH
1001: NEAATEDICT

Arabidopsis Description

LINC4little nuclei4 [Source:TAIR;Acc:AT5G65770]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.