CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45628	Canola	nucleus, plastid	71.58	39.18
AT5G65780.2	Thale cress	plastid	65.21	35.17
AT5G65770.2	Thale cress	plastid	65.94	34.74
CDY60978	Canola	nucleus, plastid	57.92	26.13
KRH28315	Soybean	cytosol	32.24	24.05
VIT_00s0558g00020.t01	Wine grape	plastid	41.89	20.59
KRH77170	Soybean	cytosol	27.87	20.51
PGSC0003DMT400055146	Potato	plastid	33.33	19.53
KRH58169	Soybean	nucleus	37.16	19.47
KRH04371	Soybean	cytosol	36.98	19.33
Zm00001d043335_P006	Maize	extracellular, mitochondrion	28.96	16.34
KXG33452	Sorghum	cytosol	29.51	16.23
HORVU3Hr1G074480.3	Barley	plasma membrane	27.32	15.09
TraesCS3B01G337300.1	Wheat	cytosol	26.96	14.79
TraesCS3A01G299200.1	Wheat	cytosol	27.14	14.75
TraesCS3D01G302500.2	Wheat	cytosol	26.78	14.71
GSMUA_Achr6P31730_001	Banana	cytosol	30.05	14.44
CDY67848	Canola	nucleus	19.67	13.99
CDX96106	Canola	cytosol	16.94	11.95
CDY12631	Canola	golgi, mitochondrion, nucleus, plastid	18.76	10.63
CDY19387	Canola	nucleus	20.95	10.03
CDY01790	Canola	cytosol, mitochondrion, nucleus, plastid	20.04	10.03
CDX81542	Canola	nucleus	17.67	9.87
CDX98000	Canola	nucleus	20.77	9.77
CDY45853	Canola	cytosol	16.76	9.62
CDY46040	Canola	cytosol	18.4	9.27
Solyc02g091960.2.1	Tomato	nucleus	5.1	5.76
CDY12630	Canola	mitochondrion	2.91	3.64
CDY67849	Canola	cytosol, mitochondrion, nucleus, plastid	0.18	0.33

Protein Annotations

EnsemblPlants:CDY08750	EnsemblPlantsGene:GSBRNA2T00000680001	ncoils:Coil	PANTHER:PTHR31908	PANTHER:PTHR31908:SF2	ProteinID:CDY08750
ProteinID:CDY08750.1	SEG:seg	UniParc:UPI0004EF0138	UniProt:A0A078F2L4	MapMan:35.1	:

Description

BnaA06g24740DBnaA06g24740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F2L4]

Coordinates

chrLK031989:-:172825..175448

Molecular Weight (calculated)

63747.7 Da

IEP (calculated)

4.859

GRAVY (calculated)

-0.977

Length

549 amino acids

Sequence
(BLAST)

001: MCYFQAVFER ESSLLEKEQE LLVVEEKIAS KESKVLANQA VILKKRKSDV EGELESKCKL AEDEIESKRR VWELREVDIK QREDLVGEKE HDLEVQSRTM
101: AEKEKDITER SYSLDEKEKH LNATEEDINP KTTLLENEKE RLRKLDYDLQ QTLVSLEDKR KHVDSATEKL EALSETSELS ILEMKLKEEL DDMRGQKLEL
201: LAEADRMKVE KAKFEAEWEH IDVKREELRK EVEYITRQRE AFSMYLKDER DNIREERDAL RNQHKHDMEA LNREREEFMN KMVEEHSEWL SKIQRERADF
301: LLGIETQKRE LEYCIENRRE KVSALKQKAV VTREEELDLQ NGVSTVSNSE DGYNSNNGSS PSSATPFSWI KQYTNLIFKN PPESSLPMHH HEGALPSEKR
401: EEKAYTKGLS IAVENLEAGR KRRGNNTSGS DTNETSNHKK RKHDVTHEVD PESVISSLQN VSEDKHELPS NQTQAPPSIM VVLSEIVKIT KVTCETEFIN
501: KVSNIECSDD PSEAGTKMVE EKKQDSDCSE VGFFNTQTLS KAKFFSLLV

Best Arabidopsis Sequence Match ( AT5G65770.1 )
(BLAST)

0001: MATSSRSERF PITPSTAATN RLTITPNSRV LKSPLTEEIM WKRLKDAGFD EQSIKNRDKA ALIAYIAKLE SEVYDYQHNM GLLLLEKNEL SSQYEEIKAS
0101: VDESDLTHMR EKSAYVSALA EAKKREESLK KDVGIAKECI SSLEKTLHEM RAECAETKVS AGSTMSEAHV MIEDALKKLA DAEAKMRAAE ALQAEANRYH
0201: RIAERKLKEV ESREDDLTRR LASFKSECET KENEMVIERQ TLNERRKSLQ QEHERLLDAQ VSLNQREDHI FARSQELAEL EKGLDTAKTT FEEERKAFED
0301: KKSNLEIALA LCAKREEAVS ERESSLLKKE QELLVAEEKI ASKESELIQN VLANQEVILR KRKSDVEAEL ECKSKSVEVE IESKRRAWEL REVDIKQRED
0401: LVGEKEHDLE VQSRALAEKE KDITEKSFNL DEKEKNLVAT EEDINRKTTM LEDEKERLRK LDLELQQSLT SLEDKRKRVD SATQKLEALK SETSELSTLE
0501: MKLKEELDDL RAQKLEMLAE ADRLKVEKAK FEAEWEHIDV KREELRKEAE YITRQREAFS MYLKDERDNI KEERDALRNQ HKNDVESLNR EREEFMNKMV
0601: EEHSEWLSKI QRERADFLLG IEMQKRELEY CIENKREELE NSSRDREKAF EQEKKLEEER IQSLKEMAEK ELEHVQVELK RLDAERLEIK LDRERREREW
0701: AELKDSVEEL KVQREKLETQ RHMLRAERDE IRHEIEELKK LENLKVALDD MSMAKMQLSN LERSWEKVSA LKQKVVSRDD ELDLQNGVST VSNSEDGYNS
0801: SMERQNGLTP SSATPFSWIK RCTNLIFKTS PEKSTLMHHY EEEGGVPSEK LKLESSRREE KAYTEGLSIA VERLEAGRKR RGNTSGDETS EPSNNKKRKH
0901: DVTQKYSDEA DTQSVISSPQ NVPEDKHELP SSQTQTPSGM VVISETVKIT RVTCETEVTN KVTTLDCSES PSEAGRKMGE ETEDGDCNQT GINASETVIH
1001: NEAATEDICT

Arabidopsis Description

LINC4little nuclei4 [Source:TAIR;Acc:AT5G65770]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.