Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19387 | Canola | nucleus | 86.55 | 88.13 |
| AT1G13220.3 | Thale cress | nucleus | 70.27 | 71.87 |
| CDY67849 | Canola | cytosol, mitochondrion, nucleus, plastid | 11.74 | 44.63 |
| CDX96106 | Canola | cytosol | 28.36 | 42.55 |
| VIT_01s0011g02810.t01 | Wine grape | mitochondrion, plastid | 40.19 | 41.1 |
| Os02t0710102-01 | Rice | nucleus | 5.57 | 38.69 |
| CDY45853 | Canola | cytosol | 31.28 | 38.18 |
| CDX81542 | Canola | nucleus | 32.05 | 38.05 |
| CDY12630 | Canola | mitochondrion | 14.05 | 37.27 |
| KRH75531 | Soybean | nucleus | 30.85 | 37.19 |
| CDY12631 | Canola | golgi, mitochondrion, nucleus, plastid | 30.25 | 36.43 |
| CDY01790 | Canola | cytosol, mitochondrion, nucleus, plastid | 34.02 | 36.19 |
| KRH70636 | Soybean | nucleus | 37.02 | 35.7 |
| CDY46040 | Canola | cytosol | 31.62 | 33.88 |
| CDY67848 | Canola | nucleus | 20.65 | 31.22 |
| GSMUA_Achr8P14400_001 | Banana | cytosol | 31.11 | 30.17 |
| GSMUA_Achr9P21820_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 6.08 | 29.71 |
| GSMUA_Achr11P... | Banana | nucleus | 32.56 | 29.34 |
| Zm00001d051600_P004 | Maize | nucleus | 28.62 | 28.62 |
| KXG30901 | Sorghum | mitochondrion, nucleus | 28.28 | 28.55 |
| TraesCS6D01G256200.1 | Wheat | nucleus | 27.68 | 28.14 |
| TraesCS6B01G303400.1 | Wheat | nucleus | 27.51 | 28.06 |
| HORVU6Hr1G069560.1 | Barley | nucleus | 27.08 | 27.57 |
| GSMUA_Achr3P28980_001 | Banana | mitochondrion | 21.17 | 24.05 |
| CDY45628 | Canola | nucleus, plastid | 20.05 | 23.33 |
| GSMUA_Achr6P09340_001 | Banana | cytosol | 30.93 | 22.6 |
| CDY60978 | Canola | nucleus, plastid | 21.77 | 20.87 |
| CDY08750 | Canola | nucleus | 9.77 | 20.77 |
| GSMUA_Achr9P21830_001 | Banana | nucleus | 11.05 | 18.3 |
Protein Annotations
| EnsemblPlants:CDX98000 | EnsemblPlantsGene:GSBRNA2T00105360001 | ncoils:Coil | PANTHER:PTHR31908 | PANTHER:PTHR31908:SF5 | ProteinID:CDX98000 |
| ProteinID:CDX98000.1 | SEG:seg | UniParc:UPI0004EF3C7F | MapMan:20.4.3.1 | : | : |
Description
BnaA06g07510D
Coordinates
chrLK031902:-:486913..491647
Molecular Weight (calculated)
134636.0 Da
IEP (calculated)
4.833
GRAVY (calculated)
-1.224
Length
1167 amino acids
Sequence
(BLAST)
(BLAST)
0001: MFTPQRKQWM SPAMTPRSDT RVTNPRNADR KGKAIAFSED PVNSTLPPPP IRTLTGEGFS RGEADDMDMG DWRRFREVGL LDEASMERKD REALLEKIST
0101: LEKELYGYQH NMGLLLMENK EWASKHEQLD QALLEAQEIL KREQSSHLYA LTTVEQREEN LRKALGLEKQ CVEELEKALR EMQEENNKTR LASEAKLAEA
0201: NALVASVTGR SSDVESKIYS AESKLAEATR KSSELEMRLK EVETRERVLQ QERLSFAKER ESYEETFHKQ REYLHEWEKK LQEKEESMPE QKRSLNHREE
0301: KVNEKENNLK LKAKELEERE RKIALSMSKC KETEEDLSKR LQELTAKEKE SCTLQSMLMA KERELQALEE KLIAREGTEI QKLIDDQKAE LADKMLEFEQ
0401: ECEERRKSLD KELQRKTEEV ERQRVEIDHG EEKLQKRNQA LNKKFERVTE KEMDLEAKSK AIREKEKTIQ AEEKKLSLEK QQLLSDKESL VDLQQEIENI
0501: RSEMMKKEDA IREELKSLEI KKGEREEYHR LQSELKSQIE KSRLHEEFLS KEVENLKQEK ERFEKEWEIL DEKQAEYNKE QLRISEEKAK FERFQKLEGE
0601: RLKKEESAFR VQIKQELDDI RLQRESFEAN MEHERSALQE KAKLEHSKAL DDLETMRRNL EIEQQKRKEE DEKALQDRLS QFEDKRMKEL SDINRRKQAL
0701: NREMEEMVSK RGALQKESEE IAKHKEKLKE QQAEMHNDIS ELSTLSINLK KRREEFARER GRFLAFVQKL KDCESCGQLA NEFVLSDLQL PYNEEEAIPP
0801: PNGVVSDLPE SSDESDSCNI NKSLDRDASG SGRRPNMSIL QKCTSILFSP SKRAEHDMDT GKPEQRPTSS LAVNKETKGE KPLPVSTIPD EDEEYTDSRV
0901: QETSECSQFS ELQSARRGRG RGRPRKPKPS TNPTSSANHA SPGESSKGEV SGHVSGTSEK TTGRGGRKRQ HTEDTAAGGG RRKRQQTAVA VLPQTPGQKR
1001: YNLRRNKTVD QVPANVENDA AGGEDDADIA ASAPSKDNVE GTSESVVEPL RARRLESSEV RVERVVTVET TTANTNTNVG VSVANTAVAA NIAMSPSVED
1101: DQTQRTVNED KNEEYEDGND EEDYEEQEDD DDDGDDDDDD GDDDDDGGSP RPGEGSIRKK LWTFLTT
0101: LEKELYGYQH NMGLLLMENK EWASKHEQLD QALLEAQEIL KREQSSHLYA LTTVEQREEN LRKALGLEKQ CVEELEKALR EMQEENNKTR LASEAKLAEA
0201: NALVASVTGR SSDVESKIYS AESKLAEATR KSSELEMRLK EVETRERVLQ QERLSFAKER ESYEETFHKQ REYLHEWEKK LQEKEESMPE QKRSLNHREE
0301: KVNEKENNLK LKAKELEERE RKIALSMSKC KETEEDLSKR LQELTAKEKE SCTLQSMLMA KERELQALEE KLIAREGTEI QKLIDDQKAE LADKMLEFEQ
0401: ECEERRKSLD KELQRKTEEV ERQRVEIDHG EEKLQKRNQA LNKKFERVTE KEMDLEAKSK AIREKEKTIQ AEEKKLSLEK QQLLSDKESL VDLQQEIENI
0501: RSEMMKKEDA IREELKSLEI KKGEREEYHR LQSELKSQIE KSRLHEEFLS KEVENLKQEK ERFEKEWEIL DEKQAEYNKE QLRISEEKAK FERFQKLEGE
0601: RLKKEESAFR VQIKQELDDI RLQRESFEAN MEHERSALQE KAKLEHSKAL DDLETMRRNL EIEQQKRKEE DEKALQDRLS QFEDKRMKEL SDINRRKQAL
0701: NREMEEMVSK RGALQKESEE IAKHKEKLKE QQAEMHNDIS ELSTLSINLK KRREEFARER GRFLAFVQKL KDCESCGQLA NEFVLSDLQL PYNEEEAIPP
0801: PNGVVSDLPE SSDESDSCNI NKSLDRDASG SGRRPNMSIL QKCTSILFSP SKRAEHDMDT GKPEQRPTSS LAVNKETKGE KPLPVSTIPD EDEEYTDSRV
0901: QETSECSQFS ELQSARRGRG RGRPRKPKPS TNPTSSANHA SPGESSKGEV SGHVSGTSEK TTGRGGRKRQ HTEDTAAGGG RRKRQQTAVA VLPQTPGQKR
1001: YNLRRNKTVD QVPANVENDA AGGEDDADIA ASAPSKDNVE GTSESVVEPL RARRLESSEV RVERVVTVET TTANTNTNVG VSVANTAVAA NIAMSPSVED
1101: DQTQRTVNED KNEEYEDGND EEDYEEQEDD DDDGDDDDDD GDDDDDGGSP RPGEGSIRKK LWTFLTT
0001: MFTPQRKQWM SPAMTPRSET HKIGGVTNPR NADRKGKAVA FSDDLVIPTL PPPPIGTLTG QGVSRGHTDD MDMGDWRRFR EVGLLNEASM EKKDQEALLE
0101: KISTLEKELY GYQHNMGLLL MENKELVSKH EQLNQAFQEA QEILKREQSS HLYALTTVEQ REENLRKALG LEKQCVQELE KALREIQEEN SKIRLSSEAK
0201: LVEANALVAS VNGRSSDVEN KIYSAESKLA EATRKSSELK LRLKEVETRE SVLQQERLSF TKERESYEGT FQKQREYLNE WEKKLQGKEE SITEQKRNLN
0301: QREEKVNEIE KKLKLKEKEL EEWNRKVDLS MSKSKETEED ITKRLEELTT KEKEAHTLQI TLLAKENELR AFEEKLIARE GTEIQKLIDD QKEVLGSKML
0401: EFELECEEIR KSLDKELQRK IEELERQKVE IDHSEEKLEK RNQAMNKKFD RVNEKEMDLE AKLKTIKERE KIIQAEEKRL SLEKQQLLSD KESLEDLQQE
0501: IEKIRAEMTK KEEMIEEECK SLEIKKEERE EYLRLQSELK SQIEKSRVHE EFLSKEVENL KQEKERFEKE WEILDEKQAV YNKERIRISE EKEKFERFQL
0601: LEGERLKKEE SALRVQIMQE LDDIRLQRES FEANMEHERS ALQEKVKLEQ SKVIDDLEMM RRNLEIELQE RKEQDEKDLL DRMAQFEDKR MAELSDINHQ
0701: KQALNREMEE MMSKRSALQK ESEEIAKHKD KLKEQQVEMH NDISELSTLS INLKKRREVF GRERSRFLAF VQKLKDCGSC GQLVNDFVLS DLQLPSNDEV
0801: AILPPIGVLN DLPGSSNASD SCNIKKSLDG DASGSGGSRR PSMSILQKCT SIIFSPSKRV EHGIDTGKPE QRLSSSVAVG METKGEKPLP VDLRLRPSSS
0901: SIPEEDEEYT DSRVQETSEG SQLSEFQSSR RGRGRPRKAK PALNPTSSVK HASLEESSKD ELSGHVSVTS KKTTGGGGRK RQHIDDTATG GKRRRQQTVA
1001: VLPQTPGQRH YNLRRKKTVD QVPADVEDNA AAGEDDADIA ASAPSKDTVE ETVVETLRAR RIETNADVVS AENNGDVPVA NVEPTVNEDT NEDGDEEEDE
1101: AQDDDNEENQ DDDDDDDGDD DGSPRPGEGS IRKKLWTFLT T
0101: KISTLEKELY GYQHNMGLLL MENKELVSKH EQLNQAFQEA QEILKREQSS HLYALTTVEQ REENLRKALG LEKQCVQELE KALREIQEEN SKIRLSSEAK
0201: LVEANALVAS VNGRSSDVEN KIYSAESKLA EATRKSSELK LRLKEVETRE SVLQQERLSF TKERESYEGT FQKQREYLNE WEKKLQGKEE SITEQKRNLN
0301: QREEKVNEIE KKLKLKEKEL EEWNRKVDLS MSKSKETEED ITKRLEELTT KEKEAHTLQI TLLAKENELR AFEEKLIARE GTEIQKLIDD QKEVLGSKML
0401: EFELECEEIR KSLDKELQRK IEELERQKVE IDHSEEKLEK RNQAMNKKFD RVNEKEMDLE AKLKTIKERE KIIQAEEKRL SLEKQQLLSD KESLEDLQQE
0501: IEKIRAEMTK KEEMIEEECK SLEIKKEERE EYLRLQSELK SQIEKSRVHE EFLSKEVENL KQEKERFEKE WEILDEKQAV YNKERIRISE EKEKFERFQL
0601: LEGERLKKEE SALRVQIMQE LDDIRLQRES FEANMEHERS ALQEKVKLEQ SKVIDDLEMM RRNLEIELQE RKEQDEKDLL DRMAQFEDKR MAELSDINHQ
0701: KQALNREMEE MMSKRSALQK ESEEIAKHKD KLKEQQVEMH NDISELSTLS INLKKRREVF GRERSRFLAF VQKLKDCGSC GQLVNDFVLS DLQLPSNDEV
0801: AILPPIGVLN DLPGSSNASD SCNIKKSLDG DASGSGGSRR PSMSILQKCT SIIFSPSKRV EHGIDTGKPE QRLSSSVAVG METKGEKPLP VDLRLRPSSS
0901: SIPEEDEEYT DSRVQETSEG SQLSEFQSSR RGRGRPRKAK PALNPTSSVK HASLEESSKD ELSGHVSVTS KKTTGGGGRK RQHIDDTATG GKRRRQQTVA
1001: VLPQTPGQRH YNLRRKKTVD QVPADVEDNA AAGEDDADIA ASAPSKDTVE ETVVETLRAR RIETNADVVS AENNGDVPVA NVEPTVNEDT NEDGDEEEDE
1101: AQDDDNEENQ DDDDDDDGDD DGSPRPGEGS IRKKLWTFLT T
Arabidopsis Description
LINC2nuclear matrix constituent protein-related [Source:TAIR;Acc:AT1G13220]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.