Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG30901 | Sorghum | mitochondrion, nucleus | 86.98 | 87.8 |
| Os02t0710102-01 | Rice | nucleus | 11.4 | 79.17 |
| TraesCS6D01G256200.1 | Wheat | nucleus | 67.78 | 68.9 |
| TraesCS6B01G303400.1 | Wheat | nucleus | 67.52 | 68.88 |
| HORVU6Hr1G069560.1 | Barley | nucleus | 66.67 | 67.89 |
| CDY67849 | Canola | cytosol, mitochondrion, nucleus, plastid | 11.91 | 45.28 |
| GSMUA_Achr8P14400_001 | Banana | cytosol | 38.3 | 37.16 |
| CDX96106 | Canola | cytosol | 23.82 | 35.73 |
| CDY12630 | Canola | mitochondrion | 13.28 | 35.23 |
| GSMUA_Achr11P... | Banana | nucleus | 38.82 | 34.98 |
| VIT_01s0011g02810.t01 | Wine grape | mitochondrion, plastid | 33.33 | 34.09 |
| CDY01790 | Canola | cytosol, mitochondrion, nucleus, plastid | 30.51 | 32.45 |
| Bra004210.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 29.65 | 32.43 |
| CDY46040 | Canola | cytosol | 30.08 | 32.23 |
| CDY12631 | Canola | golgi, mitochondrion, nucleus, plastid | 26.74 | 32.2 |
| Bra034012.1-P | Field mustard | cytosol | 30.25 | 31.66 |
| KRH75531 | Soybean | nucleus | 26.14 | 31.51 |
| KRH01492 | Soybean | nucleus | 31.88 | 31.23 |
| Solyc02g089800.2.1 | Tomato | nucleus | 29.05 | 31.22 |
| VIT_14s0006g03280.t01 | Wine grape | nucleus | 33.68 | 31.22 |
| PGSC0003DMT400008676 | Potato | cytosol | 28.96 | 30.9 |
| Solyc03g045050.2.1 | Tomato | nucleus | 30.76 | 30.76 |
| KRH45183 | Soybean | nucleus | 31.19 | 30.56 |
| PGSC0003DMT400026042 | Potato | cytosol, mitochondrion, nucleus, plastid | 29.73 | 30.52 |
| AT1G67230.1 | Thale cress | nucleus | 29.39 | 30.3 |
| CDY19387 | Canola | nucleus | 28.53 | 29.06 |
| CDX81542 | Canola | nucleus | 24.42 | 28.99 |
| KRH70636 | Soybean | nucleus | 29.91 | 28.84 |
| AT1G13220.3 | Thale cress | nucleus | 28.02 | 28.66 |
| CDX98000 | Canola | nucleus | 28.62 | 28.62 |
| CDY45853 | Canola | cytosol | 23.05 | 28.14 |
| AT1G68790.1 | Thale cress | nucleus | 26.14 | 28.11 |
| CDY67848 | Canola | nucleus | 17.91 | 27.07 |
| GSMUA_Achr6P09340_001 | Banana | cytosol | 36.59 | 26.74 |
| Bra038353.1-P | Field mustard | cytosol | 23.91 | 25.67 |
| Zm00001d043335_P006 | Maize | extracellular, mitochondrion | 19.28 | 23.12 |
Protein Annotations
| EnsemblPlants:Zm00001d051600_P004 | EnsemblPlants:Zm00001d051600_T004 | EnsemblPlantsGene:Zm00001d051600 | EntrezGene:103653975 | ncoils:Coil | PANTHER:PTHR31908 |
| PANTHER:PTHR31908:SF3 | ProteinID:AQK54639.1 | SEG:seg | UniParc:UPI0008427190 | UniProt:A0A1D6Q894 | MapMan:20.4.3.1 |
Description
Protein CROWDED NUCLEI 1
Coordinates
chr4:-:164094048..164100719
Molecular Weight (calculated)
134165.0 Da
IEP (calculated)
4.846
GRAVY (calculated)
-1.164
Length
1167 amino acids
Sequence
(BLAST)
(BLAST)
0001: MFTPQGKGWT GWSTPTPANQ RSGGGAPAAS APLGKGKGRV AELEQELFIC VFIPYLQLHE YQYNMGLLLI EKKEWAAKFE EISEVLTQKE EILKREQAAH
0101: LNAISEYERR EENMRKALGV EKQCVADLEK ALRDIRAEIA EVKFTSEKKI TDAQSLEASL EEKSLEIEGK LHAADAKLAE ANRKKSQADR DLEEAEARQR
0201: RLEKEKLYFE TERKAREKQL KEQEESLQEW EKKLKESQNR LNELQRSINE REERANKNDQ LFKIKQDELE EARRTVEAAK VTLKVKEDDI NKRLNELHLQ
0301: EKDADSKRSA LEEQGKKLDE REAKVTNREK EGLQKLLEDH QVELESKRRD FELELERERK SFDQNMTQKQ ADLLKREKDV KSLEAKLSKS EQALNDKKKS
0401: MENLQNDLDA KSKALKSWDE SLKNDEKRLL KEKQQMDHER EQLETYKLEL EKIKSALEAE KEKISEEQNN LKLTAQERQE HSLLIAKLKK EIEEYRMRSN
0501: SLSEEMEDLR KQRQKFEEEW EQLDEKRALL VEEDKRLNIE RMNLERWRDN EEKRLNDMKL KMDEEYKQQL ESLERKEKAL SDDMKHKQME NDEFLKGERA
0601: DVQRKLQLKR HELEMEMEQK QATKEKELEE KENELNKKID FVENKLRHAI ELNESKIEKL LLEKREVQME RELLLEERKK TETDKADIRR DIESLHSLSK
0701: SLKERREAYN RDRSRLIELF EKYKACKNCG ISIFEGLDSL LLKDSAEIEH PSLAVEGDDH ALTTDTSGPD TGTLVNSGGR FSLLQKCSRL FKFSPRKKGE
0801: QSSEQPSERN ISFGARLEEA TQSDGDYVPT PVYEIAHDSF NAEDELPSDG ETRENEESER HDIADNAQME SSVGVADNSI DILGTKSFDG ANDMAVEATI
0901: VSVDQNGEDS VVPAEAGVEP ETSEQGRRQQ NQRGRRKGGM KRTRSVNAVV EDAKMILGEV FEEKTDDQGD TVKVGATRKR RFAGATISEQ DEEGSEAHSE
1001: SVSLGGQRRK RRQTAGAVTD APGERRYNLR HSRAANAGAA TAQADKKKSS KARNKHTVEA SADDTEGTSK VVEEPAPESK RVSESADYDA SQLHEFSQVE
1101: VGDAHAVDGE GAGEEDGDIL DGQDALPDVP MTPSGSEFGA EQEDEDDDDS ERRNQSISKK LWSFFTT
0101: LNAISEYERR EENMRKALGV EKQCVADLEK ALRDIRAEIA EVKFTSEKKI TDAQSLEASL EEKSLEIEGK LHAADAKLAE ANRKKSQADR DLEEAEARQR
0201: RLEKEKLYFE TERKAREKQL KEQEESLQEW EKKLKESQNR LNELQRSINE REERANKNDQ LFKIKQDELE EARRTVEAAK VTLKVKEDDI NKRLNELHLQ
0301: EKDADSKRSA LEEQGKKLDE REAKVTNREK EGLQKLLEDH QVELESKRRD FELELERERK SFDQNMTQKQ ADLLKREKDV KSLEAKLSKS EQALNDKKKS
0401: MENLQNDLDA KSKALKSWDE SLKNDEKRLL KEKQQMDHER EQLETYKLEL EKIKSALEAE KEKISEEQNN LKLTAQERQE HSLLIAKLKK EIEEYRMRSN
0501: SLSEEMEDLR KQRQKFEEEW EQLDEKRALL VEEDKRLNIE RMNLERWRDN EEKRLNDMKL KMDEEYKQQL ESLERKEKAL SDDMKHKQME NDEFLKGERA
0601: DVQRKLQLKR HELEMEMEQK QATKEKELEE KENELNKKID FVENKLRHAI ELNESKIEKL LLEKREVQME RELLLEERKK TETDKADIRR DIESLHSLSK
0701: SLKERREAYN RDRSRLIELF EKYKACKNCG ISIFEGLDSL LLKDSAEIEH PSLAVEGDDH ALTTDTSGPD TGTLVNSGGR FSLLQKCSRL FKFSPRKKGE
0801: QSSEQPSERN ISFGARLEEA TQSDGDYVPT PVYEIAHDSF NAEDELPSDG ETRENEESER HDIADNAQME SSVGVADNSI DILGTKSFDG ANDMAVEATI
0901: VSVDQNGEDS VVPAEAGVEP ETSEQGRRQQ NQRGRRKGGM KRTRSVNAVV EDAKMILGEV FEEKTDDQGD TVKVGATRKR RFAGATISEQ DEEGSEAHSE
1001: SVSLGGQRRK RRQTAGAVTD APGERRYNLR HSRAANAGAA TAQADKKKSS KARNKHTVEA SADDTEGTSK VVEEPAPESK RVSESADYDA SQLHEFSQVE
1101: VGDAHAVDGE GAGEEDGDIL DGQDALPDVP MTPSGSEFGA EQEDEDDDDS ERRNQSISKK LWSFFTT
001: MFTPQRKQWM SPAMTPRSET HKIGGVTNPR NADRKGKAVA FSDDLVIPTL PPPPIGTLTG QGVSRGHTDD MDMGDWRRFR EVGLLNEASM EKKDQEALLE
101: KISTLEKELY GYQHNMGLLL MENKELVSKH EQLNQAFQEA QEILKREQSS HLYALTTVEQ REENLRKALG LEKQCVQELE KALREIQEEN SKIRLSSEAK
201: LVEANALVAS VNGRSSDVEN KIYSAESKLA EATRKSSELK LRLKEVETRE SVLQQERLSF TKERESYEGT FQKQREYLNE WEKKLQGKEE SITEQKRNLN
301: QREEKVNEIE KKLKLKEKEL EEWNRKVDLS MSKSKETEED ITKRLEELTT KEKEAHTLQI TLLAKENELR AFEEKLIARE GVILGYSFCR L
101: KISTLEKELY GYQHNMGLLL MENKELVSKH EQLNQAFQEA QEILKREQSS HLYALTTVEQ REENLRKALG LEKQCVQELE KALREIQEEN SKIRLSSEAK
201: LVEANALVAS VNGRSSDVEN KIYSAESKLA EATRKSSELK LRLKEVETRE SVLQQERLSF TKERESYEGT FQKQREYLNE WEKKLQGKEE SITEQKRNLN
301: QREEKVNEIE KKLKLKEKEL EEWNRKVDLS MSKSKETEED ITKRLEELTT KEKEAHTLQI TLLAKENELR AFEEKLIARE GVILGYSFCR L
Arabidopsis Description
LINC2nuclear matrix constituent protein-related [Source:TAIR;Acc:AT1G13220]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.