Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12631 | Canola | golgi, mitochondrion, nucleus, plastid | 70.49 | 81.11 |
| Bra004210.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 70.58 | 73.76 |
| AT1G67230.1 | Thale cress | nucleus | 71.03 | 69.96 |
| CDY12630 | Canola | mitochondrion | 27.26 | 69.09 |
| Os02t0710102-01 | Rice | nucleus | 6.55 | 43.45 |
| VIT_14s0006g03280.t01 | Wine grape | nucleus | 47.98 | 42.49 |
| Solyc02g089800.2.1 | Tomato | nucleus | 40.36 | 41.44 |
| KRH45183 | Soybean | nucleus | 44.04 | 41.23 |
| PGSC0003DMT400026042 | Potato | cytosol, mitochondrion, nucleus, plastid | 41.88 | 41.07 |
| PGSC0003DMT400008676 | Potato | cytosol | 40.27 | 41.04 |
| KRH01492 | Soybean | nucleus | 43.68 | 40.89 |
| Solyc03g045050.2.1 | Tomato | nucleus | 41.61 | 39.76 |
| GSMUA_Achr8P14400_001 | Banana | cytosol | 34.62 | 32.09 |
| GSMUA_Achr9P21820_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 6.64 | 30.96 |
| TraesCS6D01G256200.1 | Wheat | nucleus | 31.3 | 30.4 |
| KXG30901 | Sorghum | mitochondrion, nucleus | 31.48 | 30.36 |
| Zm00001d051600_P004 | Maize | nucleus | 31.66 | 30.25 |
| TraesCS6B01G303400.1 | Wheat | nucleus | 31.03 | 30.24 |
| GSMUA_Achr11P... | Banana | nucleus | 34.17 | 29.42 |
| HORVU6Hr1G069560.1 | Barley | nucleus | 30.13 | 29.32 |
| Bra038353.1-P | Field mustard | cytosol | 27.62 | 28.33 |
| GSMUA_Achr3P28980_001 | Banana | mitochondrion | 22.87 | 24.83 |
| Bra037827.1-P | Field mustard | nucleus, plastid | 21.35 | 23.52 |
| GSMUA_Achr6P09340_001 | Banana | cytosol | 32.47 | 22.67 |
| GSMUA_Achr9P21830_001 | Banana | nucleus | 11.3 | 17.87 |
Protein Annotations
Description
AT1G67230 (E=0.0) LINC1 | LINC1 (LITTLE NUCLEI1)
Coordinates
chrA02:-:10210751..10215079
Molecular Weight (calculated)
127809.0 Da
IEP (calculated)
4.843
GRAVY (calculated)
-1.093
Length
1115 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSTPLKVWQ RWSTTPAKGP DMVTAVTGRV SEIQYEDDPR RLLSELQKEL FEYQHSMGLL LLEKKEWGSR YEELQLEFEH ANECLRRERN AHLAAMADVE
0101: KREEGLKKAL GVEKQCALDL EKGLRELRSE NAEIKFTADS KLTEADALVR SVEEKSLEVE AKLRAVDARL AEVSRKSSEV ERKSKEVEAR ESSLQRERFA
0201: YIAEREADEA TLSKQREDLR EWERKLQEGE ERVAKSQMIV KQREDRANEG DKIVKQKGKE FEEAQKKIDA DNLALKKKED DITSRIKALT LKEQETDVLK
0301: KSLETKEREL LSMQEKLDAR EKVEVQQLFD EHQTKLEATQ REFELEMEQK RKSIDDNLRS KVAEVEKREA EWKHMEEKVA KREQALDRKL EKHKEKEKDF
0401: ELRLKGIKGR EKALKSEEKA LETEKRKLAE DKENILNLIA EVEKIKAENE VQLSEIREEK EELKVAEEER SEYLRLQTEL KEQIENCRSQ QELLSREVED
0501: LKAQRECFEK EWEELDKRKA KIESELKNIT DEKAKLERNN HLEEERLKKE HQAADDNMKR ELETLEVTKA SFAATMEHER SVISKKAESE RSQLLHDIEM
0601: LKRKLESDMQ SKLEEREKEL QAKEKLFEEE REKELSNINY LRDLARRELT DVQIDRQRIE IEKLETDASK KHLEEQQTEI RKDVDDLVAL TKKLKEQREQ
0701: FISERNRFLS SMESNRNCNH CGELLSELTL PDIDNLEMPN LSKLVENEAP QQEMRDISPT ATSLGLTVPG GTVSWLRKCT SKILKLSPIK MGEASVALNF
0801: ADQEPESTEL ANANSGPSTM LQVQCESLTR EVKVANANSD GDQSNINSKA QEVDADSLSN PNGDDQLRMR GKARVGRTRS VKAVVEDAKA IYGESIELSE
0901: PVDSTENVED NAKGNDESTD EPGRSDKGAS KNGRKRGRMG SLQTCTTEQD GNESDGKSDS VTGGERQRGK RRHKVASEKQ EEVVGQRYNL RRSTRVAGKT
1001: ALGKKNEETT GGVQQEEGIY CAQTTATASV GVAISDDNGV STNVVEREAM ADCEDTDAGS AKRIGESQEM SEEDVNKTPQ RADSGNEYDG EEDESESEHP
1101: GKVSISKKLW TFLTT
0101: KREEGLKKAL GVEKQCALDL EKGLRELRSE NAEIKFTADS KLTEADALVR SVEEKSLEVE AKLRAVDARL AEVSRKSSEV ERKSKEVEAR ESSLQRERFA
0201: YIAEREADEA TLSKQREDLR EWERKLQEGE ERVAKSQMIV KQREDRANEG DKIVKQKGKE FEEAQKKIDA DNLALKKKED DITSRIKALT LKEQETDVLK
0301: KSLETKEREL LSMQEKLDAR EKVEVQQLFD EHQTKLEATQ REFELEMEQK RKSIDDNLRS KVAEVEKREA EWKHMEEKVA KREQALDRKL EKHKEKEKDF
0401: ELRLKGIKGR EKALKSEEKA LETEKRKLAE DKENILNLIA EVEKIKAENE VQLSEIREEK EELKVAEEER SEYLRLQTEL KEQIENCRSQ QELLSREVED
0501: LKAQRECFEK EWEELDKRKA KIESELKNIT DEKAKLERNN HLEEERLKKE HQAADDNMKR ELETLEVTKA SFAATMEHER SVISKKAESE RSQLLHDIEM
0601: LKRKLESDMQ SKLEEREKEL QAKEKLFEEE REKELSNINY LRDLARRELT DVQIDRQRIE IEKLETDASK KHLEEQQTEI RKDVDDLVAL TKKLKEQREQ
0701: FISERNRFLS SMESNRNCNH CGELLSELTL PDIDNLEMPN LSKLVENEAP QQEMRDISPT ATSLGLTVPG GTVSWLRKCT SKILKLSPIK MGEASVALNF
0801: ADQEPESTEL ANANSGPSTM LQVQCESLTR EVKVANANSD GDQSNINSKA QEVDADSLSN PNGDDQLRMR GKARVGRTRS VKAVVEDAKA IYGESIELSE
0901: PVDSTENVED NAKGNDESTD EPGRSDKGAS KNGRKRGRMG SLQTCTTEQD GNESDGKSDS VTGGERQRGK RRHKVASEKQ EEVVGQRYNL RRSTRVAGKT
1001: ALGKKNEETT GGVQQEEGIY CAQTTATASV GVAISDDNGV STNVVEREAM ADCEDTDAGS AKRIGESQEM SEEDVNKTPQ RADSGNEYDG EEDESESEHP
1101: GKVSISKKLW TFLTT
0001: MSTPLKVWQR WSTPTKATNP DSNGSSHGTG LDMVTPVSGR VSEIQFDDPR ILPEKISELE KELFEYQHSM GLLLIEKKEW SSQYEALQQA FEEVNECLKQ
0101: ERNAHLIAIA DVEKREEGLR KALGIEKQCA LDLEKALKEL RAENAEIKFT ADSKLTEANA LVRSVEEKSL EVEAKLRAVD AKLAEVSRKS SDVERKAKEV
0201: EARESSLQRE RFSYIAEREA DEATLSKQRE DLREWERKLQ EGEERVAKSQ MIVKQREDRA NESDKIIKQK GKELEEAQKK IDAANLAVKK LEDDVSSRIK
0301: DLALREQETD VLKKSIETKA RELQALQEKL EAREKMAVQQ LVDEHQAKLD STQREFELEM EQKRKSIDDS LKSKVAEVEK REAEWKHMEE KVAKREQALD
0401: RKLEKHKEKE NDFDLRLKGI SGREKALKSE EKALETEKKK LLEDKEIILN LKALVEKVSG ENQAQLSEIN KEKDELRVTE EERSEYLRLQ TELKEQIEKC
0501: RSQQELLQKE AEDLKAQRES FEKEWEELDE RKAKIGNELK NITDQKEKLE RHIHLEEERL KKEKQAANEN MERELETLEV AKASFAETME YERSMLSKKA
0601: ESERSQLLHD IEMRKRKLES DMQTILEEKE RELQAKKKLF EEEREKELSN INYLRDVARR EMMDMQNERQ RIEKEKLEVD SSKNHLEEQQ TEIRKDVDDL
0701: VALTKKLKEQ REQFISERSR FLSSMESNRN CSRCGELLSE LVLPEIDNLE MPNMSKLANI LDNEAPRQEM RDISPTAAGL GLPVTGGKVS WFRKCTSKML
0801: KLSPIKMTEP SVTWNLADQE PQSTEQANVG GPSTTVQAAT TYSFDVQKAE SETGTKEVEV TNVNSDGDQS DINSKAQEVA ADSLSNLDVD GQSRMKGKGK
0901: ARTRRTRSVK DVVDDAKALY GESINLYEPN DSTENVDDST KASTGETGRS DKAISKNGRK RGRVGSLRTC TTEQDGNESD GKSDSVTGGA HQRKRRQKVA
1001: SEQQGEVVGQ RYNLRRPRRV TGEPALSKKN EDIGGVQQEE GIHCTQATAT ASVGVAVSDN GVSTNVVQHE ATADSEDTDA GSPKRTDESE AMSEDVNKTP
1101: LRADSDGEDD ESDAEHPGKV SIGKKLWTFL TT
0101: ERNAHLIAIA DVEKREEGLR KALGIEKQCA LDLEKALKEL RAENAEIKFT ADSKLTEANA LVRSVEEKSL EVEAKLRAVD AKLAEVSRKS SDVERKAKEV
0201: EARESSLQRE RFSYIAEREA DEATLSKQRE DLREWERKLQ EGEERVAKSQ MIVKQREDRA NESDKIIKQK GKELEEAQKK IDAANLAVKK LEDDVSSRIK
0301: DLALREQETD VLKKSIETKA RELQALQEKL EAREKMAVQQ LVDEHQAKLD STQREFELEM EQKRKSIDDS LKSKVAEVEK REAEWKHMEE KVAKREQALD
0401: RKLEKHKEKE NDFDLRLKGI SGREKALKSE EKALETEKKK LLEDKEIILN LKALVEKVSG ENQAQLSEIN KEKDELRVTE EERSEYLRLQ TELKEQIEKC
0501: RSQQELLQKE AEDLKAQRES FEKEWEELDE RKAKIGNELK NITDQKEKLE RHIHLEEERL KKEKQAANEN MERELETLEV AKASFAETME YERSMLSKKA
0601: ESERSQLLHD IEMRKRKLES DMQTILEEKE RELQAKKKLF EEEREKELSN INYLRDVARR EMMDMQNERQ RIEKEKLEVD SSKNHLEEQQ TEIRKDVDDL
0701: VALTKKLKEQ REQFISERSR FLSSMESNRN CSRCGELLSE LVLPEIDNLE MPNMSKLANI LDNEAPRQEM RDISPTAAGL GLPVTGGKVS WFRKCTSKML
0801: KLSPIKMTEP SVTWNLADQE PQSTEQANVG GPSTTVQAAT TYSFDVQKAE SETGTKEVEV TNVNSDGDQS DINSKAQEVA ADSLSNLDVD GQSRMKGKGK
0901: ARTRRTRSVK DVVDDAKALY GESINLYEPN DSTENVDDST KASTGETGRS DKAISKNGRK RGRVGSLRTC TTEQDGNESD GKSDSVTGGA HQRKRRQKVA
1001: SEQQGEVVGQ RYNLRRPRRV TGEPALSKKN EDIGGVQQEE GIHCTQATAT ASVGVAVSDN GVSTNVVQHE ATADSEDTDA GSPKRTDESE AMSEDVNKTP
1101: LRADSDGEDD ESDAEHPGKV SIGKKLWTFL TT
Arabidopsis Description
CRWN1Protein CROWDED NUCLEI 1 [Source:UniProtKB/Swiss-Prot;Acc:F4HRT5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.