Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra016526.1-P | |
| Bra018084.1-P | |
| Bra019524.1-P | |
| Bra025708.1-P | |
| Bra033773.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45853 | Canola | cytosol | 81.42 | 92.57 |
| AT1G68790.1 | Thale cress | nucleus | 57.13 | 57.23 |
| Os02t0710102-01 | Rice | nucleus | 5.24 | 33.93 |
| VIT_01s0011g02810.t01 | Wine grape | mitochondrion, plastid | 35.14 | 33.48 |
| KRH75531 | Soybean | nucleus | 27.05 | 30.37 |
| Bra004210.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 29.07 | 29.62 |
| KRH70636 | Soybean | nucleus | 32.2 | 28.93 |
| Bra034012.1-P | Field mustard | cytosol | 28.33 | 27.62 |
| GSMUA_Achr9P21820_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 6.07 | 27.62 |
| GSMUA_Achr8P14400_001 | Banana | cytosol | 27.97 | 25.27 |
| KXG30901 | Sorghum | mitochondrion, nucleus | 25.67 | 24.13 |
| Zm00001d051600_P004 | Maize | nucleus | 25.67 | 23.91 |
| TraesCS6B01G303400.1 | Wheat | nucleus | 24.84 | 23.6 |
| TraesCS6D01G256200.1 | Wheat | nucleus | 24.75 | 23.43 |
| HORVU6Hr1G069560.1 | Barley | nucleus | 24.47 | 23.21 |
| GSMUA_Achr11P... | Banana | nucleus | 27.6 | 23.17 |
| GSMUA_Achr6P09340_001 | Banana | cytosol | 28.98 | 19.72 |
| GSMUA_Achr3P28980_001 | Banana | mitochondrion | 18.58 | 19.67 |
| Bra037827.1-P | Field mustard | nucleus, plastid | 18.22 | 19.57 |
| GSMUA_Achr9P21830_001 | Banana | nucleus | 8.56 | 13.19 |
Protein Annotations
| MapMan:20.4.3.1 | Gene3D:3.80.10.10 | EnsemblPlantsGene:Bra038353 | EnsemblPlants:Bra038353.1 | EnsemblPlants:Bra038353.1-P | ncoils:Coil |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005730 |
| GO:GO:0005737 | GO:GO:0006997 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0016043 |
| InterPro:IPR032675 | InterPro:LRR_dom_sf | UniProt:M4FB87 | PANTHER:PTHR31908 | PANTHER:PTHR31908:SF5 | SUPFAM:SSF52058 |
| SUPFAM:SSF57997 | UniParc:UPI000254649D | SEG:seg | : | : | : |
Description
AT1G68790 (E=9e-191) LINC3 | LINC3 (LITTLE NUCLEI3)
Coordinates
chrA02:-:11037016..11041478
Molecular Weight (calculated)
124942.0 Da
IEP (calculated)
5.126
GRAVY (calculated)
-1.001
Length
1087 amino acids
Sequence
(BLAST)
(BLAST)
0001: MFTPQRNQFP ATDRKGKAVA FADEITTPSP PMSRFGSLSA VDDWRRFKEV GLLDEASLER KDIDALIEKN LKLEKELFDY QHNMGLLLIE KKKWTSRNEE
0101: LQQAFDEVNE ILKRERTSSL IALSESEKRE ENLRRALISE KQFVAELERD LKYLQQEHTE VKSTSEAKLA EANALVMGIK EKALEVDKER AVAEEKLSVI
0201: SRKSSELERK LKDVETREKV LQRERLSLAT EREAHEAVFY KQREDLQEWE KKLTVEEDRL SEVKRSINHT EERSIESERA IKKKEKSLEE MQRKIDTAKS
0301: ELKEREESVN KMLNDLSMKE KDFEAMKTKV DMKEKELHEI EEKLVVREQM EIGKLLEDQK GVLDSRMQEF ETELEQRRIS LDEELEKKRG EIEKLQVEIG
0401: LKEEQLGKRE AALEKMEERM KEKEKDLEAR LEAVKEKEEA LKTEEKKLHV ENERLLEDKE SLRKLKDEIE EIGAETTKQE SRIREECESL RITKEERLEF
0501: IRQQSELKQQ IDRVKQEEWE ALDEKKADIA REQKEVAEEK EKLRSLQISR VLDDVKMKKE SLEGKVTINE NISCAKKLAL KEMEELEYEK LALKKERDEI
0601: SVEKKQLKKL HDELYKDVAD VDALRNSLKE QRDDLYRSKD RFAVLLKKVD LCSTCRIPFH KFINSERVPD AEDGNDRKST SFIGKLASAM APESSLPDDS
0701: VDTAAGNDHE PSASFSESKG AEVSLQSEIK SDKPRRGRGR GKSVRGRSQA TSDSKPSDVK VPRKRQREQG SRITESEQAD GDSDEGVDSV TTGGRKKKRQ
0801: TAVPVSLAPA QSRYHLRRHR NVGTEEDKAQ ESAGVVEKQE NVNGDIRTVP SPKDNLTPPQ GENRENGKAE TLVEAVTQKE IVKVEAEAEF KDKSTGKRPV
0901: QEDPQLEAGG SGEGKDHGGE EDDGTFSIIQ EENEEEDAET EHPGEASIGK KIWQVKQKGS VYSLKLRALL EMQAFDSNML SPYALSQRKN RFSDGLTTTD
1001: IQEMSSLAEL VLVGFNLSNT EIPWSILEVK KLRFLGLSNN NLRGKLFPQM KTEMLYVNGN NIISEREEGS LRSSMMCGKK AWCLGKP
0101: LQQAFDEVNE ILKRERTSSL IALSESEKRE ENLRRALISE KQFVAELERD LKYLQQEHTE VKSTSEAKLA EANALVMGIK EKALEVDKER AVAEEKLSVI
0201: SRKSSELERK LKDVETREKV LQRERLSLAT EREAHEAVFY KQREDLQEWE KKLTVEEDRL SEVKRSINHT EERSIESERA IKKKEKSLEE MQRKIDTAKS
0301: ELKEREESVN KMLNDLSMKE KDFEAMKTKV DMKEKELHEI EEKLVVREQM EIGKLLEDQK GVLDSRMQEF ETELEQRRIS LDEELEKKRG EIEKLQVEIG
0401: LKEEQLGKRE AALEKMEERM KEKEKDLEAR LEAVKEKEEA LKTEEKKLHV ENERLLEDKE SLRKLKDEIE EIGAETTKQE SRIREECESL RITKEERLEF
0501: IRQQSELKQQ IDRVKQEEWE ALDEKKADIA REQKEVAEEK EKLRSLQISR VLDDVKMKKE SLEGKVTINE NISCAKKLAL KEMEELEYEK LALKKERDEI
0601: SVEKKQLKKL HDELYKDVAD VDALRNSLKE QRDDLYRSKD RFAVLLKKVD LCSTCRIPFH KFINSERVPD AEDGNDRKST SFIGKLASAM APESSLPDDS
0701: VDTAAGNDHE PSASFSESKG AEVSLQSEIK SDKPRRGRGR GKSVRGRSQA TSDSKPSDVK VPRKRQREQG SRITESEQAD GDSDEGVDSV TTGGRKKKRQ
0801: TAVPVSLAPA QSRYHLRRHR NVGTEEDKAQ ESAGVVEKQE NVNGDIRTVP SPKDNLTPPQ GENRENGKAE TLVEAVTQKE IVKVEAEAEF KDKSTGKRPV
0901: QEDPQLEAGG SGEGKDHGGE EDDGTFSIIQ EENEEEDAET EHPGEASIGK KIWQVKQKGS VYSLKLRALL EMQAFDSNML SPYALSQRKN RFSDGLTTTD
1001: IQEMSSLAEL VLVGFNLSNT EIPWSILEVK KLRFLGLSNN NLRGKLFPQM KTEMLYVNGN NIISEREEGS LRSSMMCGKK AWCLGKP
0001: MFTPQRNRWP ETDRKGKAIA FSDEIITPPP QRVLLREDDD WQKFKEVGLL DEASLERKDR DALIEKILKL EKELFDYQHN MGLLLIEKKQ WTSTNNELQQ
0101: AYDEAMEMLK REKTSNAITL NEADKREENL RKALIDEKQF VAELENDLKY WQREHSVVKS TSEAKLEEAN ALVIGMKEKA LEVDRERAIA EEKFSVMNRK
0201: SSELERKLKE VETREKVHQR EHLSLVTERE AHEAVFYKQR EDLQEWEKKL TLEEDRLSEV KRSINHREER VMENERTIEK KEKILENLQQ KISVAKSELT
0301: EKEESIKIKL NDISLKEKDF EAMKAKVDIK EKELHEFEEN LIEREQMEIG KLLDDQKAVL DSRRREFEME LEQMRRSLDE ELEGKKAEIE QLQVEISHKE
0401: EKLAKREAAL EKKEEGVKKK EKDLDARLKT VKEKEKALKA EEKKLHMENE RLLEDKECLR KLKDEIEEIG TETTKQESRI REEHESLRIT KEERVEFLRL
0501: QSELKQQIDK VKQEEELLLK EREELKQDKE RFEKEWEALD KKRANITREQ NEVAEENEKL RNLQISEKHR LKREEMTSRD NLKRELDGVK MQKESFEADM
0601: EDLEMQKRNL DMEFQRQEEA GERDFNERAR TYEKRSQEEL DNINYTKKLA QREMEEMQYE KLALEREREQ ISVRKKLLKE QEAEMHKDIT ELDVLRSSLK
0701: EKRKEFICER ERFLVFLEKL KSCSSCGEIT ENFVLSDLRL PDVEDGDKRF GKQKLKAEEA LNISPSAENS KRTSLLGKIA SKLLSISPIG KTDKVTDLGI
0801: TVKLPESSQP DDSLDRVSGE DHEPSATEQS FTDSRIQEGP EGSLQSEMKS DKPRRGRGRG RGRGKSVRGR SQATKAVSRD SKPSDGETPR KRQREQTSRI
0901: TESEQAAGDS DEGVDSITTG GRRKKRQIAV PVSQTPGQTR YQLRRHRNVG TEEDKAQASK GATEKQERVN DDIRKVPSPK ETRTPPEGEN RENGKAEVLV
1001: ETVTHEEIVT VETETVFKVN NTGKNPVEDP QLEVGGSGEI REHGEEDDEN ISMIEEENEG EEEEETERQG NDASIGKKIW VFFTT
0101: AYDEAMEMLK REKTSNAITL NEADKREENL RKALIDEKQF VAELENDLKY WQREHSVVKS TSEAKLEEAN ALVIGMKEKA LEVDRERAIA EEKFSVMNRK
0201: SSELERKLKE VETREKVHQR EHLSLVTERE AHEAVFYKQR EDLQEWEKKL TLEEDRLSEV KRSINHREER VMENERTIEK KEKILENLQQ KISVAKSELT
0301: EKEESIKIKL NDISLKEKDF EAMKAKVDIK EKELHEFEEN LIEREQMEIG KLLDDQKAVL DSRRREFEME LEQMRRSLDE ELEGKKAEIE QLQVEISHKE
0401: EKLAKREAAL EKKEEGVKKK EKDLDARLKT VKEKEKALKA EEKKLHMENE RLLEDKECLR KLKDEIEEIG TETTKQESRI REEHESLRIT KEERVEFLRL
0501: QSELKQQIDK VKQEEELLLK EREELKQDKE RFEKEWEALD KKRANITREQ NEVAEENEKL RNLQISEKHR LKREEMTSRD NLKRELDGVK MQKESFEADM
0601: EDLEMQKRNL DMEFQRQEEA GERDFNERAR TYEKRSQEEL DNINYTKKLA QREMEEMQYE KLALEREREQ ISVRKKLLKE QEAEMHKDIT ELDVLRSSLK
0701: EKRKEFICER ERFLVFLEKL KSCSSCGEIT ENFVLSDLRL PDVEDGDKRF GKQKLKAEEA LNISPSAENS KRTSLLGKIA SKLLSISPIG KTDKVTDLGI
0801: TVKLPESSQP DDSLDRVSGE DHEPSATEQS FTDSRIQEGP EGSLQSEMKS DKPRRGRGRG RGRGKSVRGR SQATKAVSRD SKPSDGETPR KRQREQTSRI
0901: TESEQAAGDS DEGVDSITTG GRRKKRQIAV PVSQTPGQTR YQLRRHRNVG TEEDKAQASK GATEKQERVN DDIRKVPSPK ETRTPPEGEN RENGKAEVLV
1001: ETVTHEEIVT VETETVFKVN NTGKNPVEDP QLEVGGSGEI REHGEEDDEN ISMIEEENEG EEEEETERQG NDASIGKKIW VFFTT
Arabidopsis Description
CRWN3Protein CROWDED NUCLEI 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA42]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.