Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81542 | Canola | nucleus | 59.26 | 65.41 |
| CDY45853 | Canola | cytosol | 54.47 | 61.82 |
| Bra038353.1-P | Field mustard | cytosol | 57.23 | 57.13 |
| VIT_01s0011g02810.t01 | Wine grape | mitochondrion, plastid | 41.47 | 39.44 |
| AT1G13220.3 | Thale cress | nucleus | 39.45 | 37.51 |
| KRH75531 | Soybean | nucleus | 31.43 | 35.23 |
| KRH70636 | Soybean | nucleus | 37.23 | 33.39 |
| Os02t0710102-01 | Rice | nucleus | 5.16 | 33.33 |
| AT1G67230.1 | Thale cress | nucleus | 34.38 | 32.95 |
| GSMUA_Achr8P14400_001 | Banana | cytosol | 31.98 | 28.84 |
| KXG30901 | Sorghum | mitochondrion, nucleus | 28.02 | 26.3 |
| GSMUA_Achr11P... | Banana | nucleus | 31.24 | 26.18 |
| Zm00001d051600_P004 | Maize | nucleus | 28.11 | 26.14 |
| TraesCS6B01G303400.1 | Wheat | nucleus | 27.0 | 25.61 |
| TraesCS6D01G256200.1 | Wheat | nucleus | 27.0 | 25.52 |
| HORVU6Hr1G069560.1 | Barley | nucleus | 26.64 | 25.22 |
| GSMUA_Achr9P21820_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 5.53 | 25.1 |
| AT5G65780.2 | Thale cress | plastid | 21.66 | 23.08 |
| AT5G65770.2 | Thale cress | plastid | 21.47 | 22.36 |
| GSMUA_Achr6P09340_001 | Banana | cytosol | 31.71 | 21.54 |
| GSMUA_Achr3P28980_001 | Banana | mitochondrion | 19.63 | 20.74 |
| GSMUA_Achr9P21830_001 | Banana | nucleus | 10.78 | 16.6 |
Protein Annotations
| MapMan:20.4.3.1 | EntrezGene:843210 | ProteinID:AAG52034.1 | ProteinID:AEE34839.1 | ArrayExpress:AT1G68790 | EnsemblPlantsGene:AT1G68790 |
| RefSeq:AT1G68790 | TAIR:AT1G68790 | RefSeq:AT1G68790-TAIR-G | EnsemblPlants:AT1G68790.1 | TAIR:AT1G68790.1 | EMBL:AY072196 |
| Unigene:At.28034 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005635 | GO:GO:0005652 | GO:GO:0005654 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006997 |
| GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0031965 |
| Symbol:LINC3 | RefSeq:NP_177046.1 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31908 | PANTHER:PTHR31908:SF5 | UniProt:Q9CA42 |
| UniParc:UPI000009FC8A | SEG:seg | : | : | : | : |
Description
CRWN3Protein CROWDED NUCLEI 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA42]
Coordinates
chr1:-:25834686..25839541
Molecular Weight (calculated)
127211.0 Da
IEP (calculated)
4.988
GRAVY (calculated)
-1.223
Length
1085 amino acids
Sequence
(BLAST)
(BLAST)
0001: MFTPQRNRWP ETDRKGKAIA FSDEIITPPP QRVLLREDDD WQKFKEVGLL DEASLERKDR DALIEKILKL EKELFDYQHN MGLLLIEKKQ WTSTNNELQQ
0101: AYDEAMEMLK REKTSNAITL NEADKREENL RKALIDEKQF VAELENDLKY WQREHSVVKS TSEAKLEEAN ALVIGMKEKA LEVDRERAIA EEKFSVMNRK
0201: SSELERKLKE VETREKVHQR EHLSLVTERE AHEAVFYKQR EDLQEWEKKL TLEEDRLSEV KRSINHREER VMENERTIEK KEKILENLQQ KISVAKSELT
0301: EKEESIKIKL NDISLKEKDF EAMKAKVDIK EKELHEFEEN LIEREQMEIG KLLDDQKAVL DSRRREFEME LEQMRRSLDE ELEGKKAEIE QLQVEISHKE
0401: EKLAKREAAL EKKEEGVKKK EKDLDARLKT VKEKEKALKA EEKKLHMENE RLLEDKECLR KLKDEIEEIG TETTKQESRI REEHESLRIT KEERVEFLRL
0501: QSELKQQIDK VKQEEELLLK EREELKQDKE RFEKEWEALD KKRANITREQ NEVAEENEKL RNLQISEKHR LKREEMTSRD NLKRELDGVK MQKESFEADM
0601: EDLEMQKRNL DMEFQRQEEA GERDFNERAR TYEKRSQEEL DNINYTKKLA QREMEEMQYE KLALEREREQ ISVRKKLLKE QEAEMHKDIT ELDVLRSSLK
0701: EKRKEFICER ERFLVFLEKL KSCSSCGEIT ENFVLSDLRL PDVEDGDKRF GKQKLKAEEA LNISPSAENS KRTSLLGKIA SKLLSISPIG KTDKVTDLGI
0801: TVKLPESSQP DDSLDRVSGE DHEPSATEQS FTDSRIQEGP EGSLQSEMKS DKPRRGRGRG RGRGKSVRGR SQATKAVSRD SKPSDGETPR KRQREQTSRI
0901: TESEQAAGDS DEGVDSITTG GRRKKRQIAV PVSQTPGQTR YQLRRHRNVG TEEDKAQASK GATEKQERVN DDIRKVPSPK ETRTPPEGEN RENGKAEVLV
1001: ETVTHEEIVT VETETVFKVN NTGKNPVEDP QLEVGGSGEI REHGEEDDEN ISMIEEENEG EEEEETERQG NDASIGKKIW VFFTT
0101: AYDEAMEMLK REKTSNAITL NEADKREENL RKALIDEKQF VAELENDLKY WQREHSVVKS TSEAKLEEAN ALVIGMKEKA LEVDRERAIA EEKFSVMNRK
0201: SSELERKLKE VETREKVHQR EHLSLVTERE AHEAVFYKQR EDLQEWEKKL TLEEDRLSEV KRSINHREER VMENERTIEK KEKILENLQQ KISVAKSELT
0301: EKEESIKIKL NDISLKEKDF EAMKAKVDIK EKELHEFEEN LIEREQMEIG KLLDDQKAVL DSRRREFEME LEQMRRSLDE ELEGKKAEIE QLQVEISHKE
0401: EKLAKREAAL EKKEEGVKKK EKDLDARLKT VKEKEKALKA EEKKLHMENE RLLEDKECLR KLKDEIEEIG TETTKQESRI REEHESLRIT KEERVEFLRL
0501: QSELKQQIDK VKQEEELLLK EREELKQDKE RFEKEWEALD KKRANITREQ NEVAEENEKL RNLQISEKHR LKREEMTSRD NLKRELDGVK MQKESFEADM
0601: EDLEMQKRNL DMEFQRQEEA GERDFNERAR TYEKRSQEEL DNINYTKKLA QREMEEMQYE KLALEREREQ ISVRKKLLKE QEAEMHKDIT ELDVLRSSLK
0701: EKRKEFICER ERFLVFLEKL KSCSSCGEIT ENFVLSDLRL PDVEDGDKRF GKQKLKAEEA LNISPSAENS KRTSLLGKIA SKLLSISPIG KTDKVTDLGI
0801: TVKLPESSQP DDSLDRVSGE DHEPSATEQS FTDSRIQEGP EGSLQSEMKS DKPRRGRGRG RGRGKSVRGR SQATKAVSRD SKPSDGETPR KRQREQTSRI
0901: TESEQAAGDS DEGVDSITTG GRRKKRQIAV PVSQTPGQTR YQLRRHRNVG TEEDKAQASK GATEKQERVN DDIRKVPSPK ETRTPPEGEN RENGKAEVLV
1001: ETVTHEEIVT VETETVFKVN NTGKNPVEDP QLEVGGSGEI REHGEEDDEN ISMIEEENEG EEEEETERQG NDASIGKKIW VFFTT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.