Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 4
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_17s0000g07580.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68790.1 | VIT_17s0000g07580.t01 | AT1G19050.1 | 18642946 |
| AT1G68790.1 | VIT_17s0000g07580.t01 | AT3G48100.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0710102-01 | Rice | nucleus | 7.19 | 48.81 |
| VIT_14s0006g03280.t01 | Wine grape | nucleus | 51.71 | 46.86 |
| KRH75531 | Soybean | nucleus | 39.0 | 45.97 |
| KRH70636 | Soybean | nucleus | 46.98 | 44.3 |
| AT1G13220.3 | Thale cress | nucleus | 41.89 | 41.89 |
| AT1G68790.1 | Thale cress | nucleus | 39.44 | 41.47 |
| CDY19387 | Canola | nucleus | 41.28 | 41.1 |
| CDX81542 | Canola | nucleus | 34.71 | 40.28 |
| CDX98000 | Canola | nucleus | 41.1 | 40.19 |
| CDY45853 | Canola | cytosol | 33.65 | 40.17 |
| GSMUA_Achr9P21820_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 7.71 | 36.82 |
| GSMUA_Achr8P14400_001 | Banana | cytosol | 37.51 | 35.58 |
| Bra038353.1-P | Field mustard | cytosol | 33.48 | 35.14 |
| Zm00001d051600_P004 | Maize | nucleus | 34.09 | 33.33 |
| GSMUA_Achr11P... | Banana | nucleus | 37.77 | 33.28 |
| KXG30901 | Sorghum | mitochondrion, nucleus | 33.39 | 32.96 |
| TraesCS6D01G256200.1 | Wheat | nucleus | 32.69 | 32.49 |
| TraesCS6B01G303400.1 | Wheat | nucleus | 32.08 | 31.99 |
| HORVU6Hr1G069560.1 | Barley | nucleus | 32.08 | 31.94 |
| GSMUA_Achr3P28980_001 | Banana | mitochondrion | 26.64 | 29.6 |
| GSMUA_Achr6P09340_001 | Banana | cytosol | 36.9 | 26.36 |
| VIT_00s0558g00020.t01 | Wine grape | plastid | 25.42 | 25.96 |
| GSMUA_Achr9P21830_001 | Banana | nucleus | 14.11 | 22.84 |
Protein Annotations
| ArrayExpress:VIT_01s0011g02810 | EMBL:FN595752 | EnsemblPlants:VIT_01s0011g02810.t01 | EnsemblPlantsGene:VIT_01s0011g02810 | ncoils:Coil | PANTHER:PTHR31908 |
| PANTHER:PTHR31908:SF5 | ProteinID:CCB50956 | ProteinID:CCB50956.1 | SEG:seg | TIGR:TC59110 | UniParc:UPI0002109B20 |
| UniProt:F6HF26 | MapMan:20.4.3.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:2495082..2505332
Molecular Weight (calculated)
131410.0 Da
IEP (calculated)
5.327
GRAVY (calculated)
-1.087
Length
1141 amino acids
Sequence
(BLAST)
(BLAST)
0001: MFTPQRKAWT GLSLTPRSEA QKSGGGAVSN PVNGGKGKSV AFVDGPPPPL GSLSGKAMLT GIDGGDMEDW RRLREAGLLD EAAMERKDRE ALVEKVSKLQ
0101: NELFDYQYSM GLLLIEKKEW TSKYEELSQA LAEAQEILKR EKSAHFIAIS EVEKREENLR KALGVERQCV AELEKALGEI HAEHSQIKLS SETKLSDANA
0201: LVAKIEKRSL EVEEKLLAAD AKLAEASRKS SELERKLQEV EARESVLRRE RLSLNAEREA HEATFHKQKE DLREWERKLQ EGEERLCEGR RIINQREEKA
0301: NEIDRTLKLK ERNLEEAQKK IDLDSLNVKV KEDDINNRLA ELTVKEKQAE SMRGILEVKE KELIVLQEKL SARERVEIQK LLDEHRAILD TKKQEFELEM
0401: EQKRNSVDEE LRSKVHEVEQ KEVEVLHREE KLGKREQALE KRLERVKEKE KELEAKLKTL KEKEKSLKAE EKRVEGEKKQ MLADKESLHL LKDELEKIRA
0501: DITEQELQIH EETERLKVTE EERSEHHRLQ LELKQEIDKC RHQEEMLQKE REDLKQERIM FEKDWEALDE KRAVITKEMR EIGDEKEKLE KLHLSEEERL
0601: KKEKLAMEEH IQRELEAVRI EKESFAAIMK HEQVTLSEKA QNDHSQMLRD FELRKRDLEI EMQNRQDEIQ KRLQERERAF EEERERELNN INHLKEVARR
0701: EIEEMKTERR RIEKEKQEVL LNKRQLEGHQ LEMRKDIDEL GILSRKLKDQ REQFIKERDR FLTFVDKHKT CKNCGEITRE FVLNDLQLPE MEVEAFPLPN
0801: LADEFLNSPQ GNMAASDGTN VKISTGEIDL VSSGSDELEP SFGIANDSFD IQQLHSDSVM REVDGGHAQS VDGVSNMGSK EQEGPEDSQQ SELKSGRRKP
0901: GRKRRTGVHR TRSVKNEGER ETSHAEKAAS TITRKRQRAP SSRITESEQD AADSEGRSDS VTAGGRGKRR QTVAPVVQTP GEKRYNLRRH KTAGTVATAQ
1001: ASANLPKRDE KGGDGGDDNT LQTKANPKAA SSPSLADSDN PKTTPLVHVT TLKSVEIREY SPDRVVRFKT VDIVGGNNDS ARLAENMELR QEIPGNPGDT
1101: PGYEDENGSM SHEEDDNSDE DESEHPGDAS IGKKLWNFFT T
0101: NELFDYQYSM GLLLIEKKEW TSKYEELSQA LAEAQEILKR EKSAHFIAIS EVEKREENLR KALGVERQCV AELEKALGEI HAEHSQIKLS SETKLSDANA
0201: LVAKIEKRSL EVEEKLLAAD AKLAEASRKS SELERKLQEV EARESVLRRE RLSLNAEREA HEATFHKQKE DLREWERKLQ EGEERLCEGR RIINQREEKA
0301: NEIDRTLKLK ERNLEEAQKK IDLDSLNVKV KEDDINNRLA ELTVKEKQAE SMRGILEVKE KELIVLQEKL SARERVEIQK LLDEHRAILD TKKQEFELEM
0401: EQKRNSVDEE LRSKVHEVEQ KEVEVLHREE KLGKREQALE KRLERVKEKE KELEAKLKTL KEKEKSLKAE EKRVEGEKKQ MLADKESLHL LKDELEKIRA
0501: DITEQELQIH EETERLKVTE EERSEHHRLQ LELKQEIDKC RHQEEMLQKE REDLKQERIM FEKDWEALDE KRAVITKEMR EIGDEKEKLE KLHLSEEERL
0601: KKEKLAMEEH IQRELEAVRI EKESFAAIMK HEQVTLSEKA QNDHSQMLRD FELRKRDLEI EMQNRQDEIQ KRLQERERAF EEERERELNN INHLKEVARR
0701: EIEEMKTERR RIEKEKQEVL LNKRQLEGHQ LEMRKDIDEL GILSRKLKDQ REQFIKERDR FLTFVDKHKT CKNCGEITRE FVLNDLQLPE MEVEAFPLPN
0801: LADEFLNSPQ GNMAASDGTN VKISTGEIDL VSSGSDELEP SFGIANDSFD IQQLHSDSVM REVDGGHAQS VDGVSNMGSK EQEGPEDSQQ SELKSGRRKP
0901: GRKRRTGVHR TRSVKNEGER ETSHAEKAAS TITRKRQRAP SSRITESEQD AADSEGRSDS VTAGGRGKRR QTVAPVVQTP GEKRYNLRRH KTAGTVATAQ
1001: ASANLPKRDE KGGDGGDDNT LQTKANPKAA SSPSLADSDN PKTTPLVHVT TLKSVEIREY SPDRVVRFKT VDIVGGNNDS ARLAENMELR QEIPGNPGDT
1101: PGYEDENGSM SHEEDDNSDE DESEHPGDAS IGKKLWNFFT T
0001: MFTPQRKQWM SPAMTPRSET HKIGGVTNPR NADRKGKAVA FSDDLVIPTL PPPPIGTLTG QGVSRGHTDD MDMGDWRRFR EVGLLNEASM EKKDQEALLE
0101: KISTLEKELY GYQHNMGLLL MENKELVSKH EQLNQAFQEA QEILKREQSS HLYALTTVEQ REENLRKALG LEKQCVQELE KALREIQEEN SKIRLSSEAK
0201: LVEANALVAS VNGRSSDVEN KIYSAESKLA EATRKSSELK LRLKEVETRE SVLQQERLSF TKERESYEGT FQKQREYLNE WEKKLQGKEE SITEQKRNLN
0301: QREEKVNEIE KKLKLKEKEL EEWNRKVDLS MSKSKETEED ITKRLEELTT KEKEAHTLQI TLLAKENELR AFEEKLIARE GTEIQKLIDD QKEVLGSKML
0401: EFELECEEIR KSLDKELQRK IEELERQKVE IDHSEEKLEK RNQAMNKKFD RVNEKEMDLE AKLKTIKERE KIIQAEEKRL SLEKQQLLSD KESLEDLQQE
0501: IEKIRAEMTK KEEMIEEECK SLEIKKEERE EYLRLQSELK SQIEKSRVHE EFLSKEVENL KQEKERFEKE WEILDEKQAV YNKERIRISE EKEKFERFQL
0601: LEGERLKKEE SALRVQIMQE LDDIRLQRES FEANMEHERS ALQEKVKLEQ SKVIDDLEMM RRNLEIELQE RKEQDEKDLL DRMAQFEDKR MAELSDINHQ
0701: KQALNREMEE MMSKRSALQK ESEEIAKHKD KLKEQQVEMH NDISELSTLS INLKKRREVF GRERSRFLAF VQKLKDCGSC GQLVNDFVLS DLQLPSNDEV
0801: AILPPIGVLN DLPGSSNASD SCNIKKSLDG DASGSGGSRR PSMSILQKCT SIIFSPSKRV EHGIDTGKPE QRLSSSVAVG METKGEKPLP VDLRLRPSSS
0901: SIPEEDEEYT DSRVQETSEG SQLSEFQSSR RGRGRPRKAK PALNPTSSVK HASLEESSKD ELSGHVSVTS KKTTGGGGRK RQHIDDTATG GKRRRQQTVA
1001: VLPQTPGQRH YNLRRKKTVD QVPADVEDNA AAGEDDADIA ASAPSKDTVE ETVVETLRAR RIETNADVVS AENNGDVPVA NVEPTVNEDT NEDGDEEEDE
1101: AQDDDNEENQ DDDDDDDGDD DGSPRPGEGS IRKKLWTFLT T
0101: KISTLEKELY GYQHNMGLLL MENKELVSKH EQLNQAFQEA QEILKREQSS HLYALTTVEQ REENLRKALG LEKQCVQELE KALREIQEEN SKIRLSSEAK
0201: LVEANALVAS VNGRSSDVEN KIYSAESKLA EATRKSSELK LRLKEVETRE SVLQQERLSF TKERESYEGT FQKQREYLNE WEKKLQGKEE SITEQKRNLN
0301: QREEKVNEIE KKLKLKEKEL EEWNRKVDLS MSKSKETEED ITKRLEELTT KEKEAHTLQI TLLAKENELR AFEEKLIARE GTEIQKLIDD QKEVLGSKML
0401: EFELECEEIR KSLDKELQRK IEELERQKVE IDHSEEKLEK RNQAMNKKFD RVNEKEMDLE AKLKTIKERE KIIQAEEKRL SLEKQQLLSD KESLEDLQQE
0501: IEKIRAEMTK KEEMIEEECK SLEIKKEERE EYLRLQSELK SQIEKSRVHE EFLSKEVENL KQEKERFEKE WEILDEKQAV YNKERIRISE EKEKFERFQL
0601: LEGERLKKEE SALRVQIMQE LDDIRLQRES FEANMEHERS ALQEKVKLEQ SKVIDDLEMM RRNLEIELQE RKEQDEKDLL DRMAQFEDKR MAELSDINHQ
0701: KQALNREMEE MMSKRSALQK ESEEIAKHKD KLKEQQVEMH NDISELSTLS INLKKRREVF GRERSRFLAF VQKLKDCGSC GQLVNDFVLS DLQLPSNDEV
0801: AILPPIGVLN DLPGSSNASD SCNIKKSLDG DASGSGGSRR PSMSILQKCT SIIFSPSKRV EHGIDTGKPE QRLSSSVAVG METKGEKPLP VDLRLRPSSS
0901: SIPEEDEEYT DSRVQETSEG SQLSEFQSSR RGRGRPRKAK PALNPTSSVK HASLEESSKD ELSGHVSVTS KKTTGGGGRK RQHIDDTATG GKRRRQQTVA
1001: VLPQTPGQRH YNLRRKKTVD QVPADVEDNA AAGEDDADIA ASAPSKDTVE ETVVETLRAR RIETNADVVS AENNGDVPVA NVEPTVNEDT NEDGDEEEDE
1101: AQDDDNEENQ DDDDDDDGDD DGSPRPGEGS IRKKLWTFLT T
Arabidopsis Description
LINC2nuclear matrix constituent protein-related [Source:TAIR;Acc:AT1G13220]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.