Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH28315 | Soybean | cytosol | 35.72 | 54.21 |
| PGSC0003DMT400055146 | Potato | plastid | 44.4 | 52.93 |
| Solyc02g091960.2.1 | Tomato | nucleus | 21.67 | 49.79 |
| KRH04371 | Soybean | cytosol | 46.55 | 49.52 |
| KRH58169 | Soybean | nucleus | 46.28 | 49.33 |
| CDY45628 | Canola | nucleus, plastid | 43.87 | 48.85 |
| Bra037827.1-P | Field mustard | nucleus, plastid | 44.23 | 48.81 |
| AT5G65780.2 | Thale cress | plastid | 44.32 | 48.62 |
| AT5G65770.2 | Thale cress | plastid | 44.49 | 47.7 |
| KRH77170 | Soybean | cytosol | 30.89 | 46.25 |
| CDY08750 | Canola | nucleus | 20.59 | 41.89 |
| CDY60978 | Canola | nucleus, plastid | 44.4 | 40.76 |
| GSMUA_Achr6P31730_001 | Banana | cytosol | 40.47 | 39.55 |
| TraesCS3D01G302500.2 | Wheat | cytosol | 34.65 | 38.74 |
| TraesCS3B01G337300.1 | Wheat | cytosol | 34.65 | 38.66 |
| Zm00001d043335_P006 | Maize | extracellular, mitochondrion | 33.57 | 38.54 |
| HORVU3Hr1G074480.3 | Barley | plasma membrane | 34.29 | 38.53 |
| TraesCS3A01G299200.1 | Wheat | cytosol | 34.83 | 38.51 |
| KXG33452 | Sorghum | cytosol | 34.11 | 38.18 |
| VIT_01s0011g02810.t01 | Wine grape | mitochondrion, plastid | 25.96 | 25.42 |
| VIT_14s0006g03280.t01 | Wine grape | nucleus | 27.04 | 23.99 |
Protein Annotations
| ArrayExpress:VIT_00s0558g00020 | EMBL:FN595802 | EnsemblPlants:VIT_00s0558g00020.t01 | EnsemblPlantsGene:VIT_00s0558g00020 | EntrezGene:100245758 | EntrezGene:LOC100245758 |
| ncoils:Coil | PANTHER:PTHR31908 | PANTHER:PTHR31908:SF2 | ProteinID:CBI29518 | ProteinID:CBI29518.3 | RefSeq:XP_003635406 |
| RefSeq:XP_003635406.1 | SEG:seg | TIGR:TC64762 | UniParc:UPI0001BE305A | UniProt:D7TG95 | wikigene:100245758 |
| wikigene:LOC100245758 | MapMan:20.4.3.1 | : | : | : | : |
Description
No Description!
Coordinates
chrUn:-:31775394..31789708
Molecular Weight (calculated)
129168.0 Da
IEP (calculated)
5.115
GRAVY (calculated)
-0.955
Length
1117 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASPQPARFS IAATPGSRVL QSPLSDDAIW KRLRDAGFDE ESIKRRDKAA LIAYIAKLEA EIFDHQHHMG LLILERKEWA TKYEQIKTEA ESAEIVYKRD
0101: QSAHSSALAE ARKREDSLKK ALEIEKECIA NLEKALHEMR QECAETKVAA EIKLAEAHSM VEDAQKRFVE AEAKLHAAEA FQAEAICFRR TAERKLQEVE
0201: AREDDLRRRL ISFKSDCDEK EKEIILERQS LSERQKNVQQ GQERLIDGQA LLNQREEYIF SRSQELNRLE KELEASKSNI EKELRALNEE KSNLELKLAS
0301: LTTREEDVVK REALLNKKEH EILILQEKIA SKESDEVQKL MALHEIALKT RKAEFEAELE TKRKLVEDEI EAKRRASELR EVDLSNREDF ALEREHELEV
0401: QSRALAEKEK DVTEKLNSLD EKEKYLNAAE KDVELEKIHL EKEKEEINKM KLNIEKSLSS LEDKKKQVDH AKEKVEAMKS ETSELLVLEM KLKEEIDVIR
0501: AQKLELMAEA DELRAQKANF EAEWESIDEK REELRNEAER IAEERLAISK FLKDERDSLK LEKDAMRDQY KQEVESLSRE REDFMSKMVH ERSEWFSKIQ
0601: QERADFLLDI EMQKKELENC IDNRREELES YFKEREKTFE QEKMKELQHI SSMKERVAKE LEHVASEMKR LDAERMEINL DHERRDREWA ELSNSIEELK
0701: MQRQKLKKQR ELLHADRKEI HTQIEHLKKL EDLKIASDNI ALAEMQQSNQ EPSQRKVYVK RYYKAQNTIP NADFESHQKI NVVKNGSGFN LPALPDSSSP
0801: STATPFSWFK RCAELIFKLS PEKPSIKHGE KSSISNSENA NLTLAGNLDL SDGFDREVHD RNEKTHSISD RQPTRYALGE PKVILEVPSS GEDVKGLHTL
0901: ESEIKKDTSE NSSHSFSEKE LLAGRKRRVV NSSSNDWVDT TLEQRQKNKK RRQQESAADP CGVSIQSDAR EGQDVSISLN QTQGGAEETN LLITDEIIKI
1001: SEVTCENVVF DNQAKPNALQ NSVVELGQDI QHGGTNGLAD SNAENCVLSS DFKAQEKIGK EVLFVDVGQV IEHSQPQDES ISEKSQQELQ EQGVPKSDDD
1101: KKLSEKVGRR MRSRQKS
0101: QSAHSSALAE ARKREDSLKK ALEIEKECIA NLEKALHEMR QECAETKVAA EIKLAEAHSM VEDAQKRFVE AEAKLHAAEA FQAEAICFRR TAERKLQEVE
0201: AREDDLRRRL ISFKSDCDEK EKEIILERQS LSERQKNVQQ GQERLIDGQA LLNQREEYIF SRSQELNRLE KELEASKSNI EKELRALNEE KSNLELKLAS
0301: LTTREEDVVK REALLNKKEH EILILQEKIA SKESDEVQKL MALHEIALKT RKAEFEAELE TKRKLVEDEI EAKRRASELR EVDLSNREDF ALEREHELEV
0401: QSRALAEKEK DVTEKLNSLD EKEKYLNAAE KDVELEKIHL EKEKEEINKM KLNIEKSLSS LEDKKKQVDH AKEKVEAMKS ETSELLVLEM KLKEEIDVIR
0501: AQKLELMAEA DELRAQKANF EAEWESIDEK REELRNEAER IAEERLAISK FLKDERDSLK LEKDAMRDQY KQEVESLSRE REDFMSKMVH ERSEWFSKIQ
0601: QERADFLLDI EMQKKELENC IDNRREELES YFKEREKTFE QEKMKELQHI SSMKERVAKE LEHVASEMKR LDAERMEINL DHERRDREWA ELSNSIEELK
0701: MQRQKLKKQR ELLHADRKEI HTQIEHLKKL EDLKIASDNI ALAEMQQSNQ EPSQRKVYVK RYYKAQNTIP NADFESHQKI NVVKNGSGFN LPALPDSSSP
0801: STATPFSWFK RCAELIFKLS PEKPSIKHGE KSSISNSENA NLTLAGNLDL SDGFDREVHD RNEKTHSISD RQPTRYALGE PKVILEVPSS GEDVKGLHTL
0901: ESEIKKDTSE NSSHSFSEKE LLAGRKRRVV NSSSNDWVDT TLEQRQKNKK RRQQESAADP CGVSIQSDAR EGQDVSISLN QTQGGAEETN LLITDEIIKI
1001: SEVTCENVVF DNQAKPNALQ NSVVELGQDI QHGGTNGLAD SNAENCVLSS DFKAQEKIGK EVLFVDVGQV IEHSQPQDES ISEKSQQELQ EQGVPKSDDD
1101: KKLSEKVGRR MRSRQKS
0001: MATSSRSERF PITPSTAATN RLTITPNSRV LKSPLTEEIM WKRLKDAGFD EQSIKNRDKA ALIAYIAKLE SEVYDYQHNM GLLLLEKNEL SSQYEEIKAS
0101: VDESDLTHMR EKSAYVSALA EAKKREESLK KDVGIAKECI SSLEKTLHEM RAECAETKVS AGSTMSEAHV MIEDALKKLA DAEAKMRAAE ALQAEANRYH
0201: RIAERKLKEV ESREDDLTRR LASFKSECET KENEMVIERQ TLNERRKSLQ QEHERLLDAQ VSLNQREDHI FARSQELAEL EKGLDTAKTT FEEERKAFED
0301: KKSNLEIALA LCAKREEAVS ERESSLLKKE QELLVAEEKI ASKESELIQN VLANQEVILR KRKSDVEAEL ECKSKSVEVE IESKRRAWEL REVDIKQRED
0401: LVGEKEHDLE VQSRALAEKE KDITEKSFNL DEKEKNLVAT EEDINRKTTM LEDEKERLRK LDLELQQSLT SLEDKRKRVD SATQKLEALK SETSELSTLE
0501: MKLKEELDDL RAQKLEMLAE ADRLKVEKAK FEAEWEHIDV KREELRKEAE YITRQREAFS MYLKDERDNI KEERDALRNQ HKNDVESLNR EREEFMNKMV
0601: EEHSEWLSKI QRERADFLLG IEMQKRELEY CIENKREELE NSSRDREKAF EQEKKLEEER IQSLKEMAEK ELEHVQVELK RLDAERLEIK LDRERREREW
0701: AELKDSVEEL KVQREKLETQ RHMLRAERDE IRHEIEELKK LENLKVALDD MSMAKMQLSN LERSWEKVSA LKQKVVSRDD ELDLQNGVST VSNSEDGYNS
0801: SMERQNGLTP SSATPFSWIK RCTNLIFKTS PEKSTLMHHY EEEGGVPSEK LKLESSRREE KAYTEGLSIA VERLEAGRKR RGNTSGDETS EPSNNKKRKH
0901: DVTQKYSDEA DTQSVISSPQ NVPEDKHELP SSQTQTPSGM VVISETVKIT RVTCETEVTN KVTTLDCSES PSEAGRKMGE ETEDGDCNQT GINASETVIH
1001: NEAATEDICT
0101: VDESDLTHMR EKSAYVSALA EAKKREESLK KDVGIAKECI SSLEKTLHEM RAECAETKVS AGSTMSEAHV MIEDALKKLA DAEAKMRAAE ALQAEANRYH
0201: RIAERKLKEV ESREDDLTRR LASFKSECET KENEMVIERQ TLNERRKSLQ QEHERLLDAQ VSLNQREDHI FARSQELAEL EKGLDTAKTT FEEERKAFED
0301: KKSNLEIALA LCAKREEAVS ERESSLLKKE QELLVAEEKI ASKESELIQN VLANQEVILR KRKSDVEAEL ECKSKSVEVE IESKRRAWEL REVDIKQRED
0401: LVGEKEHDLE VQSRALAEKE KDITEKSFNL DEKEKNLVAT EEDINRKTTM LEDEKERLRK LDLELQQSLT SLEDKRKRVD SATQKLEALK SETSELSTLE
0501: MKLKEELDDL RAQKLEMLAE ADRLKVEKAK FEAEWEHIDV KREELRKEAE YITRQREAFS MYLKDERDNI KEERDALRNQ HKNDVESLNR EREEFMNKMV
0601: EEHSEWLSKI QRERADFLLG IEMQKRELEY CIENKREELE NSSRDREKAF EQEKKLEEER IQSLKEMAEK ELEHVQVELK RLDAERLEIK LDRERREREW
0701: AELKDSVEEL KVQREKLETQ RHMLRAERDE IRHEIEELKK LENLKVALDD MSMAKMQLSN LERSWEKVSA LKQKVVSRDD ELDLQNGVST VSNSEDGYNS
0801: SMERQNGLTP SSATPFSWIK RCTNLIFKTS PEKSTLMHHY EEEGGVPSEK LKLESSRREE KAYTEGLSIA VERLEAGRKR RGNTSGDETS EPSNNKKRKH
0901: DVTQKYSDEA DTQSVISSPQ NVPEDKHELP SSQTQTPSGM VVISETVKIT RVTCETEVTN KVTTLDCSES PSEAGRKMGE ETEDGDCNQT GINASETVIH
1001: NEAATEDICT
Arabidopsis Description
LINC4little nuclei4 [Source:TAIR;Acc:AT5G65770]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.