Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G302500.2 | Wheat | cytosol | 92.66 | 92.19 |
| TraesCS3B01G337300.1 | Wheat | cytosol | 91.15 | 90.51 |
| TraesCS3A01G299200.1 | Wheat | cytosol | 91.05 | 89.6 |
| Zm00001d043335_P006 | Maize | extracellular, mitochondrion | 59.86 | 61.15 |
| KXG33452 | Sorghum | cytosol | 60.87 | 60.62 |
| Solyc02g091960.2.1 | Tomato | nucleus | 19.11 | 39.09 |
| GSMUA_Achr6P31730_001 | Banana | cytosol | 41.95 | 36.48 |
| KRH28315 | Soybean | cytosol | 26.96 | 36.41 |
| PGSC0003DMT400055146 | Potato | plastid | 34.31 | 36.39 |
| VIT_00s0558g00020.t01 | Wine grape | plastid | 38.53 | 34.29 |
| AT5G65780.2 | Thale cress | plastid | 34.61 | 33.79 |
| CDY45628 | Canola | nucleus, plastid | 33.9 | 33.6 |
| KRH77170 | Soybean | cytosol | 24.85 | 33.11 |
| AT5G65770.2 | Thale cress | plastid | 34.71 | 33.11 |
| KRH58169 | Soybean | nucleus | 34.61 | 32.82 |
| Bra037827.1-P | Field mustard | nucleus, plastid | 33.4 | 32.81 |
| KRH04371 | Soybean | cytosol | 34.21 | 32.38 |
| CDY08750 | Canola | nucleus | 15.09 | 27.32 |
| CDY60978 | Canola | nucleus, plastid | 33.4 | 27.28 |
| HORVU6Hr1G069560.1 | Barley | nucleus | 22.84 | 19.81 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G074480.3 | EnsemblPlantsGene:HORVU3Hr1G074480 | ncoils:Coil | PANTHER:PTHR31908 | PANTHER:PTHR31908:SF2 | SEG:seg |
| UniParc:UPI000B47E84B | UniProt:A0A287LP66 | MapMan:20.4.3.1 | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:558777696..558783594
Molecular Weight (calculated)
115225.0 Da
IEP (calculated)
4.729
GRAVY (calculated)
-0.977
Length
994 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPRSPAAG AALAGDEAIW RKLREAGFDE ESVRRRDKAA LIAYISRLES EVYDYQHNLG LMLLERKELA SKNEQLKASM ESAEIMHKRE RASQQSALAE
101: TRKREENLKK NVGIQKECVA NLEKALHDMR AETAEIKVSY ETKSAEALRM MDTAQNKFDE AEEKLLAAKS LEAECTRARN AALRSLQDME EREDQLRRYR
201: VSSDLEYEAK EKDISLQRKS LNDMKKMLHE KEQVLLKEQS LLNQRDESIV ERLARVTQSE KKVEEDKVIL EAERMALMEE KNKLDLKLEA VASREEAIIQ
301: KESLLDKRES ELLILQETIA NKERVEIERL NHEQEIALER RKLEFETELE NKRLSFEAET ETKRTLLDQR ERALSEQELA FAQRDQNVDI RLAELASKEE
401: AIARRTDELK DEEGKLLSQR EASYIELQKE RDEVQKMKLY LEKEKVFFEE EKREAIQAQQ NLAITQADRA DLLTLQIKLK EEIDNLRAQR TELLADADRL
501: QAEKERFEIE WELFDEKKEE LQKEAARITE ERRVMTEYFN NQSDIIKQEK ESLRADFKKN SETLSCEHEE FMSKMQQEHA SWLSKIQHER EDLTRDIDNQ
601: RMELLNLAKA RQMEIDADLR EREKEFEQKK SMELEHINSQ NAAIMSKLDH VALELQKLED ERKEANLERE KREQELFEIK NTIEALNNQR EKLQEQRKLL
701: HSDRESITEQ IQQLDVLKEP KVDSQNKQLS LIESEKSKMN YTVLLPCGEV HNSTPKNCSP PKLLERKLEV SPSVSTPVSW VQKCAQVIFK RSPEKSSGHD
801: NGRLLQNCVP KNLRKTADIN GSLADELGDQ AGEIPQVGGA KVSKKRNYSF SYDPSEVFVE PRRKYQRSTI QTVIGGEITL NNRPSVLEEK CSKNEYDAAP
901: LEYGNKGSQN PGITVDSASS DDLAFANGKA HNSDFVDEDE PSEEITVSAT EPATGALEGK RDNAEDTDDE EEEDEEEEEE RTSSAKKLWR FLIT
101: TRKREENLKK NVGIQKECVA NLEKALHDMR AETAEIKVSY ETKSAEALRM MDTAQNKFDE AEEKLLAAKS LEAECTRARN AALRSLQDME EREDQLRRYR
201: VSSDLEYEAK EKDISLQRKS LNDMKKMLHE KEQVLLKEQS LLNQRDESIV ERLARVTQSE KKVEEDKVIL EAERMALMEE KNKLDLKLEA VASREEAIIQ
301: KESLLDKRES ELLILQETIA NKERVEIERL NHEQEIALER RKLEFETELE NKRLSFEAET ETKRTLLDQR ERALSEQELA FAQRDQNVDI RLAELASKEE
401: AIARRTDELK DEEGKLLSQR EASYIELQKE RDEVQKMKLY LEKEKVFFEE EKREAIQAQQ NLAITQADRA DLLTLQIKLK EEIDNLRAQR TELLADADRL
501: QAEKERFEIE WELFDEKKEE LQKEAARITE ERRVMTEYFN NQSDIIKQEK ESLRADFKKN SETLSCEHEE FMSKMQQEHA SWLSKIQHER EDLTRDIDNQ
601: RMELLNLAKA RQMEIDADLR EREKEFEQKK SMELEHINSQ NAAIMSKLDH VALELQKLED ERKEANLERE KREQELFEIK NTIEALNNQR EKLQEQRKLL
701: HSDRESITEQ IQQLDVLKEP KVDSQNKQLS LIESEKSKMN YTVLLPCGEV HNSTPKNCSP PKLLERKLEV SPSVSTPVSW VQKCAQVIFK RSPEKSSGHD
801: NGRLLQNCVP KNLRKTADIN GSLADELGDQ AGEIPQVGGA KVSKKRNYSF SYDPSEVFVE PRRKYQRSTI QTVIGGEITL NNRPSVLEEK CSKNEYDAAP
901: LEYGNKGSQN PGITVDSASS DDLAFANGKA HNSDFVDEDE PSEEITVSAT EPATGALEGK RDNAEDTDDE EEEDEEEEEE RTSSAKKLWR FLIT
0001: MATSSRSERF PITPSTAATN RLTITPNSRV LKSPLTEEIM WKRLKDAGFD EQSIKNRDKA ALIAYIAKLE SEVYDYQHNM GLLLLEKNEL SSQYEEIKAS
0101: VDESDLTHMR EKSAYVSALA EAKKREESLK KDVGIAKECI SSLEKTLHEM RAECAETKVS AGSTMSEAHV MIEDALKKLA DAEAKMRAAE ALQAEANRYH
0201: RIAERKLKEV ESREDDLTRR LASFKSECET KENEMVIERQ TLNERRKSLQ QEHERLLDAQ VSLNQREDHI FARSQELAEL EKGLDTAKTT FEEERKAFED
0301: KKSNLEIALA LCAKREEAVS ERESSLLKKE QELLVAEEKI ASKESELIQN VLANQEVILR KRKSDVEAEL ECKSKSVEVE IESKRRAWEL REVDIKQRED
0401: LVGEKEHDLE VQSRALAEKE KDITEKSFNL DEKEKNLVAT EEDINRKTTM LEDEKERLRK LDLELQQSLT SLEDKRKRVD SATQKLEALK SETSELSTLE
0501: MKLKEELDDL RAQKLEMLAE ADRLKVEKAK FEAEWEHIDV KREELRKEAE YITRQREAFS MYLKDERDNI KEERDALRNQ HKNDVESLNR EREEFMNKMV
0601: EEHSEWLSKI QRERADFLLG IEMQKRELEY CIENKREELE NSSRDREKAF EQEKKLEEER IQSLKEMAEK ELEHVQVELK RLDAERLEIK LDRERREREW
0701: AELKDSVEEL KVQREKLETQ RHMLRAERDE IRHEIEELKK LENLKVALDD MSMAKMQLSN LERSWEKVSA LKQKVVSRDD ELDLQNGVST VSNSEDGYNS
0801: SMERQNGLTP SSATPFSWIK RCTNLIFKTS PEKSTLMHHY EEEGGVPSEK LKLESSRREE KAYTEGLSIA VERLEAGRKR RGNTSGDETS EPSNNKKRKH
0901: DVTQKYSDEA DTQSVISSPQ NVPEDKHELP SSQTQTPSGM VVISETVKIT RVTCETEVTN KVTTLDCSES PSEAGRKMGE ETEDGDCNQT GINASETVIH
1001: NEAATEDICT
0101: VDESDLTHMR EKSAYVSALA EAKKREESLK KDVGIAKECI SSLEKTLHEM RAECAETKVS AGSTMSEAHV MIEDALKKLA DAEAKMRAAE ALQAEANRYH
0201: RIAERKLKEV ESREDDLTRR LASFKSECET KENEMVIERQ TLNERRKSLQ QEHERLLDAQ VSLNQREDHI FARSQELAEL EKGLDTAKTT FEEERKAFED
0301: KKSNLEIALA LCAKREEAVS ERESSLLKKE QELLVAEEKI ASKESELIQN VLANQEVILR KRKSDVEAEL ECKSKSVEVE IESKRRAWEL REVDIKQRED
0401: LVGEKEHDLE VQSRALAEKE KDITEKSFNL DEKEKNLVAT EEDINRKTTM LEDEKERLRK LDLELQQSLT SLEDKRKRVD SATQKLEALK SETSELSTLE
0501: MKLKEELDDL RAQKLEMLAE ADRLKVEKAK FEAEWEHIDV KREELRKEAE YITRQREAFS MYLKDERDNI KEERDALRNQ HKNDVESLNR EREEFMNKMV
0601: EEHSEWLSKI QRERADFLLG IEMQKRELEY CIENKREELE NSSRDREKAF EQEKKLEEER IQSLKEMAEK ELEHVQVELK RLDAERLEIK LDRERREREW
0701: AELKDSVEEL KVQREKLETQ RHMLRAERDE IRHEIEELKK LENLKVALDD MSMAKMQLSN LERSWEKVSA LKQKVVSRDD ELDLQNGVST VSNSEDGYNS
0801: SMERQNGLTP SSATPFSWIK RCTNLIFKTS PEKSTLMHHY EEEGGVPSEK LKLESSRREE KAYTEGLSIA VERLEAGRKR RGNTSGDETS EPSNNKKRKH
0901: DVTQKYSDEA DTQSVISSPQ NVPEDKHELP SSQTQTPSGM VVISETVKIT RVTCETEVTN KVTTLDCSES PSEAGRKMGE ETEDGDCNQT GINASETVIH
1001: NEAATEDICT
Arabidopsis Description
LINC4little nuclei4 [Source:TAIR;Acc:AT5G65770]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.