Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G65780.2 | Thale cress | plastid | 78.16 | 77.7 |
| AT5G65770.2 | Thale cress | plastid | 78.16 | 75.91 |
| CDY60978 | Canola | nucleus, plastid | 84.68 | 70.42 |
| KRH28315 | Soybean | cytosol | 34.59 | 47.55 |
| PGSC0003DMT400055146 | Potato | plastid | 41.7 | 45.04 |
| VIT_00s0558g00020.t01 | Wine grape | plastid | 48.81 | 44.23 |
| KRH04371 | Soybean | cytosol | 45.85 | 44.19 |
| KRH58169 | Soybean | nucleus | 45.55 | 43.99 |
| Solyc02g091960.2.1 | Tomato | nucleus | 20.65 | 43.0 |
| KRH77170 | Soybean | cytosol | 31.52 | 42.76 |
| TraesCS3D01G302500.2 | Wheat | cytosol | 33.0 | 33.43 |
| HORVU3Hr1G074480.3 | Barley | plasma membrane | 32.81 | 33.4 |
| TraesCS3B01G337300.1 | Wheat | cytosol | 32.91 | 33.27 |
| KXG33452 | Sorghum | cytosol | 32.81 | 33.27 |
| GSMUA_Achr6P31730_001 | Banana | cytosol | 37.45 | 33.16 |
| Zm00001d043335_P006 | Maize | extracellular, mitochondrion | 31.82 | 33.09 |
| TraesCS3A01G299200.1 | Wheat | cytosol | 33.0 | 33.07 |
| Bra004210.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 23.42 | 22.21 |
| Bra034012.1-P | Field mustard | cytosol | 23.52 | 21.35 |
| Bra038353.1-P | Field mustard | cytosol | 19.57 | 18.22 |
Protein Annotations
Description
AT5G65770 (E=0.0) LINC4 | LINC4 (LITTLE NUCLEI4)
Coordinates
chrA09:+:3797811..3801706
Molecular Weight (calculated)
117289.0 Da
IEP (calculated)
4.985
GRAVY (calculated)
-1.066
Length
1012 amino acids
Sequence
(BLAST)
(BLAST)
0001: MATSSSSERV PRTPATTRLA ITPGSRVLKS PISEEVMWKR LKEAGFDEQS IKKRDKAALI AYIAKLESEV YDYQHNMGLL IMEKDDLLSK YEEVKSSVDE
0101: ADLAHRRDLS AYVSALAEAK KREESLKKDV GVAKECISSL EKTVHEIRAE CAETKVSAES KLSEGHSMIE DALKKFADAE AKMRAAEALQ AEANRYHRIA
0201: ERKLKEVESR EDDLARRLAS FKSESETRES EIVIERQTLS ERRKSLQQEH ERLLDAQASL NQREDHIFGK SQELAELQKG LESAKSTFEE ERRAFEDRKS
0301: NLEIELASLA KREEAVSERE SSLLKKEQEL LVAEEKIATK ESELIQKVLA NQEVILRKRK SDVEAELESK YKAVEDEIES KRRAWELREV DIRQREDLVG
0401: EKEHDLEVQS RALAEKEKDI TERSYNLNEK EKHLNALEED INRKTALLED EKDRLRKLDL DLQQSLISLE DKRKRVDSAT EKLEALKSET SELSILELNL
0501: KEELDDLRGQ KHELLVEADR LKVEKAKFEA EWEHIDVKRE ELRKEAEYIT RQREAFSMYL KDERDNIREE RDALRNQHKN DVEALNRERE EFMNKMVEEH
0601: SEWLSKIQRE RADFLLGIES QKRELEYCIE NKREELENAS REREKAFEQE KKLEEERIQS LKESAKKELE QVQVELKRLD VERLEIKLDR ERREREWAEL
0701: KDSVEELKVQ REKLEKQRHM LRSEREEIRH EIEELKKLEN LKVALDDMSM AKMQLSNLER SWEKVSALKQ KVELQNGVST VSNSEDGYNN SSMERQNNGS
0801: SPSSAAPLSW IKRYTNRIFK TSPESPEKSP PMHHHEEERG LPSEKMKLDS SKAYTEGMSI AVERLEAGRK RRGNASGNDS TGPSSNKKRK HDVTQKSPDA
0901: DPESVISSPR NVPEDKHELP PSQTETPSGM VVISETVKIT KVTCETEVIN KVTNIDCSEN PSEAGTKMVE ERKQDSDCNQ TTEINVPETV TQKEVESDNR
1001: EEKDSEDGGI VT
0101: ADLAHRRDLS AYVSALAEAK KREESLKKDV GVAKECISSL EKTVHEIRAE CAETKVSAES KLSEGHSMIE DALKKFADAE AKMRAAEALQ AEANRYHRIA
0201: ERKLKEVESR EDDLARRLAS FKSESETRES EIVIERQTLS ERRKSLQQEH ERLLDAQASL NQREDHIFGK SQELAELQKG LESAKSTFEE ERRAFEDRKS
0301: NLEIELASLA KREEAVSERE SSLLKKEQEL LVAEEKIATK ESELIQKVLA NQEVILRKRK SDVEAELESK YKAVEDEIES KRRAWELREV DIRQREDLVG
0401: EKEHDLEVQS RALAEKEKDI TERSYNLNEK EKHLNALEED INRKTALLED EKDRLRKLDL DLQQSLISLE DKRKRVDSAT EKLEALKSET SELSILELNL
0501: KEELDDLRGQ KHELLVEADR LKVEKAKFEA EWEHIDVKRE ELRKEAEYIT RQREAFSMYL KDERDNIREE RDALRNQHKN DVEALNRERE EFMNKMVEEH
0601: SEWLSKIQRE RADFLLGIES QKRELEYCIE NKREELENAS REREKAFEQE KKLEEERIQS LKESAKKELE QVQVELKRLD VERLEIKLDR ERREREWAEL
0701: KDSVEELKVQ REKLEKQRHM LRSEREEIRH EIEELKKLEN LKVALDDMSM AKMQLSNLER SWEKVSALKQ KVELQNGVST VSNSEDGYNN SSMERQNNGS
0801: SPSSAAPLSW IKRYTNRIFK TSPESPEKSP PMHHHEEERG LPSEKMKLDS SKAYTEGMSI AVERLEAGRK RRGNASGNDS TGPSSNKKRK HDVTQKSPDA
0901: DPESVISSPR NVPEDKHELP PSQTETPSGM VVISETVKIT KVTCETEVIN KVTNIDCSEN PSEAGTKMVE ERKQDSDCNQ TTEINVPETV TQKEVESDNR
1001: EEKDSEDGGI VT
0001: MATSSRSERF PITPSTAATN RLTITPNSRV LKSPLTEEIM WKRLKDAGFD EQSIKNRDKA ALIAYIAKLE SEVYDYQHNM GLLLLEKNEL SSQYEEIKAS
0101: VDESDLTHMR EKSAYVSALA EAKKREESLK KDVGIAKECI SSLEKTLHEM RAECAETKVS AGSTMSEAHV MIEDALKKLA DAEAKMRAAE ALQAEANRYH
0201: RIAERKLKEV ESREDDLTRR LASFKSECET KENEMVIERQ TLNERRKSLQ QEHERLLDAQ VSLNQREDHI FARSQELAEL EKGLDTAKTT FEEERKAFED
0301: KKSNLEIALA LCAKREEAVS ERESSLLKKE QELLVAEEKI ASKESELIQN VLANQEVILR KRKSDVEAEL ECKSKSVEVE IESKRRAWEL REVDIKQRED
0401: LVGEKEHDLE VQSRALAEKE KDITEKSFNL DEKEKNLVAT EEDINRKTTM LEDEKERLRK LDLELQQSLT SLEDKRKRVD SATQKLEALK SETSELSTLE
0501: MKLKEELDDL RAQKLEMLAE ADRLKVEKAK FEAEWEHIDV KREELRKEAE YITRQREAFS MYLKDERDNI KEERDALRNQ HKNDVESLNR EREEFMNKMV
0601: EEHSEWLSKI QRERADFLLG IEMQKRELEY CIENKREELE NSSRDREKAF EQEKKLEEER IQSLKEMAEK ELEHVQVELK RLDAERLEIK LDRERREREW
0701: AELKDSVEEL KVQREKLETQ RHMLRAERDE IRHEIEELKK LENLKVALDD MSMAKMQLSN LERSWEKVSA LKQKVVSRDD ELDLQNGVST VSNSEDGYNS
0801: SMERQNGLTP SSATPFSWIK RCTNLIFKTS PEKSTLMHHY EEEGGVPSEK LKLESSRREE KAYTEGLSIA VERLEAGRKR RGNTSGDETS EPSNNKKRKH
0901: DVTQKYSDEA DTQSVISSPQ NVPEDKHELP SSQTQTPSGM VVISETVKIT RVTCETEVTN KVTTLDCSES PSEAGRKMGE ETEDGDCNQT GINASETVIH
1001: NEAATEDICT
0101: VDESDLTHMR EKSAYVSALA EAKKREESLK KDVGIAKECI SSLEKTLHEM RAECAETKVS AGSTMSEAHV MIEDALKKLA DAEAKMRAAE ALQAEANRYH
0201: RIAERKLKEV ESREDDLTRR LASFKSECET KENEMVIERQ TLNERRKSLQ QEHERLLDAQ VSLNQREDHI FARSQELAEL EKGLDTAKTT FEEERKAFED
0301: KKSNLEIALA LCAKREEAVS ERESSLLKKE QELLVAEEKI ASKESELIQN VLANQEVILR KRKSDVEAEL ECKSKSVEVE IESKRRAWEL REVDIKQRED
0401: LVGEKEHDLE VQSRALAEKE KDITEKSFNL DEKEKNLVAT EEDINRKTTM LEDEKERLRK LDLELQQSLT SLEDKRKRVD SATQKLEALK SETSELSTLE
0501: MKLKEELDDL RAQKLEMLAE ADRLKVEKAK FEAEWEHIDV KREELRKEAE YITRQREAFS MYLKDERDNI KEERDALRNQ HKNDVESLNR EREEFMNKMV
0601: EEHSEWLSKI QRERADFLLG IEMQKRELEY CIENKREELE NSSRDREKAF EQEKKLEEER IQSLKEMAEK ELEHVQVELK RLDAERLEIK LDRERREREW
0701: AELKDSVEEL KVQREKLETQ RHMLRAERDE IRHEIEELKK LENLKVALDD MSMAKMQLSN LERSWEKVSA LKQKVVSRDD ELDLQNGVST VSNSEDGYNS
0801: SMERQNGLTP SSATPFSWIK RCTNLIFKTS PEKSTLMHHY EEEGGVPSEK LKLESSRREE KAYTEGLSIA VERLEAGRKR RGNTSGDETS EPSNNKKRKH
0901: DVTQKYSDEA DTQSVISSPQ NVPEDKHELP SSQTQTPSGM VVISETVKIT RVTCETEVTN KVTTLDCSES PSEAGRKMGE ETEDGDCNQT GINASETVIH
1001: NEAATEDICT
Arabidopsis Description
LINC4little nuclei4 [Source:TAIR;Acc:AT5G65770]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.