Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 3
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400055146 | Potato | plastid | 72.22 | 37.46 |
VIT_00s0558g00020.t01 | Wine grape | plastid | 49.79 | 21.67 |
Bra037827.1-P | Field mustard | nucleus, plastid | 43.0 | 20.65 |
CDY45628 | Canola | nucleus, plastid | 41.77 | 20.24 |
AT5G65780.2 | Thale cress | plastid | 41.56 | 19.84 |
KRH28315 | Soybean | cytosol | 30.04 | 19.84 |
TraesCS3D01G302500.2 | Wheat | cytosol | 40.12 | 19.52 |
AT5G65770.2 | Thale cress | plastid | 41.77 | 19.48 |
TraesCS3B01G337300.1 | Wheat | cytosol | 39.92 | 19.38 |
TraesCS3A01G299200.1 | Wheat | cytosol | 39.92 | 19.21 |
KRH04371 | Soybean | cytosol | 41.36 | 19.14 |
HORVU3Hr1G074480.3 | Barley | plasma membrane | 39.09 | 19.11 |
KRH58169 | Soybean | nucleus | 40.74 | 18.89 |
KXG33452 | Sorghum | cytosol | 38.27 | 18.64 |
Zm00001d043335_P006 | Maize | extracellular, mitochondrion | 37.24 | 18.6 |
GSMUA_Achr6P31730_001 | Banana | cytosol | 42.8 | 18.2 |
KRH77170 | Soybean | cytosol | 26.54 | 17.29 |
CDY60978 | Canola | nucleus, plastid | 42.59 | 17.01 |
Solyc02g089800.2.1 | Tomato | nucleus | 30.66 | 13.72 |
Solyc03g045050.2.1 | Tomato | nucleus | 28.81 | 12.0 |
CDY08750 | Canola | nucleus | 5.76 | 5.1 |
Protein Annotations
EnsemblPlants:Solyc02g091960.2.1 | EnsemblPlantsGene:Solyc02g091960.2 | ncoils:Coil | PANTHER:PTHR31908 | PANTHER:PTHR31908:SF2 | SEG:seg |
UniParc:UPI0002767D52 | UniProt:K4BCZ4 | MapMan:20.4.3.1 | : | : | : |
Description
No Description!
Coordinates
chr2:+:53171259..53177689
Molecular Weight (calculated)
55181.1 Da
IEP (calculated)
5.362
GRAVY (calculated)
-0.886
Length
486 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPGSGRLA LTPVNPTPIS GLGRVSKTPL TDEVIWKRLR EAGFDEDSIK RRDKAALIAY IAKLETELYD HQYQMGLLIL ERKEWVSKNE QSKAASESAE
101: LLYKREQAAR LSDTAEAKKL EANLKKALGI EKECVANIEK ALHEMRAECA EAKVASENKL AEAQSMMEDA QKKYTDVEEK LRKAESLEAE ASLFHRTAER
201: KLREVESRED DLRRQTLLFK SECEAKEKEI QLERQSLSER QKTLQRSQEE LLDGQALLNK REEFIFSRSQ ELNRHEKDLE DEKSNFENDI KSLNEEKRNL
301: EVKLKSLSAR EEGIIRREHE LYEKEKELLL LQGKIQSKEI DGSKQVMVNQ EATLVTKISS IERCADTLLD RTPSNKRRRE DGDFISQLTE NGASCPLPPT
401: PDAPDVENLE VLPNQTHIAA EETTVYIDKI VTVHEVTEID VRKVTEGSPG TLSGDSGRKV GNNGSLESDQ NGKPEGRARR TRATRK
101: LLYKREQAAR LSDTAEAKKL EANLKKALGI EKECVANIEK ALHEMRAECA EAKVASENKL AEAQSMMEDA QKKYTDVEEK LRKAESLEAE ASLFHRTAER
201: KLREVESRED DLRRQTLLFK SECEAKEKEI QLERQSLSER QKTLQRSQEE LLDGQALLNK REEFIFSRSQ ELNRHEKDLE DEKSNFENDI KSLNEEKRNL
301: EVKLKSLSAR EEGIIRREHE LYEKEKELLL LQGKIQSKEI DGSKQVMVNQ EATLVTKISS IERCADTLLD RTPSNKRRRE DGDFISQLTE NGASCPLPPT
401: PDAPDVENLE VLPNQTHIAA EETTVYIDKI VTVHEVTEID VRKVTEGSPG TLSGDSGRKV GNNGSLESDQ NGKPEGRARR TRATRK
0001: MATSSRSERF PITPSTAATN RLTITPNSRV LKSPLTEEIM WKRLKDAGFD EQSIKNRDKA ALIAYIAKLE SEVYDYQHNM GLLLLEKNEL SSQYEEIKAS
0101: VDESDLTHMR EKSAYVSALA EAKKREESLK KDVGIAKECI SSLEKTLHEM RAECAETKVS AGSTMSEAHV MIEDALKKLA DAEAKMRAAE ALQAEANRYH
0201: RIAERKLKEV ESREDDLTRR LASFKSECET KENEMVIERQ TLNERRKSLQ QEHERLLDAQ VSLNQREDHI FARSQELAEL EKGLDTAKTT FEEERKAFED
0301: KKSNLEIALA LCAKREEAVS ERESSLLKKE QELLVAEEKI ASKESELIQN VLANQEVILR KRKSDVEAEL ECKSKSVEVE IESKRRAWEL REVDIKQRED
0401: LVGEKEHDLE VQSRALAEKE KDITEKSFNL DEKEKNLVAT EEDINRKTTM LEDEKERLRK LDLELQQSLT SLEDKRKRVD SATQKLEALK SETSELSTLE
0501: MKLKEELDDL RAQKLEMLAE ADRLKVEKAK FEAEWEHIDV KREELRKEAE YITRQREAFS MYLKDERDNI KEERDALRNQ HKNDVESLNR EREEFMNKMV
0601: EEHSEWLSKI QRERADFLLG IEMQKRELEY CIENKREELE NSSRDREKAF EQEKKLEEER IQSLKEMAEK ELEHVQVELK RLDAERLEIK LDRERREREW
0701: AELKDSVEEL KVQREKLETQ RHMLRAERDE IRHEIEELKK LENLKVALDD MSMAKMQLSN LERSWEKVSA LKQKVVSRDD ELDLQNGVST VSNSEDGYNS
0801: SMERQNGLTP SSATPFSWIK RCTNLIFKTS PEKSTLMHHY EEEGGVPSEK LKLESSRREE KAYTEGLSIA VERLEAGRKR RGNTSGDETS EPSNNKKRKH
0901: DVTQKYSDEA DTQSVISSPQ NVPEDKHELP SSQTQTPSGM VVISETVKIT RVTCETEVTN KVTTLDCSES PSEAGRKMGE ETEDGDCNQT GINASETVIH
1001: NEAATEDICT
0101: VDESDLTHMR EKSAYVSALA EAKKREESLK KDVGIAKECI SSLEKTLHEM RAECAETKVS AGSTMSEAHV MIEDALKKLA DAEAKMRAAE ALQAEANRYH
0201: RIAERKLKEV ESREDDLTRR LASFKSECET KENEMVIERQ TLNERRKSLQ QEHERLLDAQ VSLNQREDHI FARSQELAEL EKGLDTAKTT FEEERKAFED
0301: KKSNLEIALA LCAKREEAVS ERESSLLKKE QELLVAEEKI ASKESELIQN VLANQEVILR KRKSDVEAEL ECKSKSVEVE IESKRRAWEL REVDIKQRED
0401: LVGEKEHDLE VQSRALAEKE KDITEKSFNL DEKEKNLVAT EEDINRKTTM LEDEKERLRK LDLELQQSLT SLEDKRKRVD SATQKLEALK SETSELSTLE
0501: MKLKEELDDL RAQKLEMLAE ADRLKVEKAK FEAEWEHIDV KREELRKEAE YITRQREAFS MYLKDERDNI KEERDALRNQ HKNDVESLNR EREEFMNKMV
0601: EEHSEWLSKI QRERADFLLG IEMQKRELEY CIENKREELE NSSRDREKAF EQEKKLEEER IQSLKEMAEK ELEHVQVELK RLDAERLEIK LDRERREREW
0701: AELKDSVEEL KVQREKLETQ RHMLRAERDE IRHEIEELKK LENLKVALDD MSMAKMQLSN LERSWEKVSA LKQKVVSRDD ELDLQNGVST VSNSEDGYNS
0801: SMERQNGLTP SSATPFSWIK RCTNLIFKTS PEKSTLMHHY EEEGGVPSEK LKLESSRREE KAYTEGLSIA VERLEAGRKR RGNTSGDETS EPSNNKKRKH
0901: DVTQKYSDEA DTQSVISSPQ NVPEDKHELP SSQTQTPSGM VVISETVKIT RVTCETEVTN KVTTLDCSES PSEAGRKMGE ETEDGDCNQT GINASETVIH
1001: NEAATEDICT
Arabidopsis Description
LINC4little nuclei4 [Source:TAIR;Acc:AT5G65770]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.