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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • plastid 3
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:nucleus
Predotar:plastid
PProwler:plastid
WoLF PSORT:plastid
YLoc:nucleus
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400055146 Potato plastid 72.22 37.46
VIT_00s0558g00020.t01 Wine grape plastid 49.79 21.67
Bra037827.1-P Field mustard nucleus, plastid 43.0 20.65
CDY45628 Canola nucleus, plastid 41.77 20.24
AT5G65780.2 Thale cress plastid 41.56 19.84
KRH28315 Soybean cytosol 30.04 19.84
TraesCS3D01G302500.2 Wheat cytosol 40.12 19.52
AT5G65770.2 Thale cress plastid 41.77 19.48
TraesCS3B01G337300.1 Wheat cytosol 39.92 19.38
TraesCS3A01G299200.1 Wheat cytosol 39.92 19.21
KRH04371 Soybean cytosol 41.36 19.14
HORVU3Hr1G074480.3 Barley plasma membrane 39.09 19.11
KRH58169 Soybean nucleus 40.74 18.89
KXG33452 Sorghum cytosol 38.27 18.64
Zm00001d043335_P006 Maize extracellular, mitochondrion 37.24 18.6
GSMUA_Achr6P31730_001 Banana cytosol 42.8 18.2
KRH77170 Soybean cytosol 26.54 17.29
CDY60978 Canola nucleus, plastid 42.59 17.01
Solyc02g089800.2.1 Tomato nucleus 30.66 13.72
Solyc03g045050.2.1 Tomato nucleus 28.81 12.0
CDY08750 Canola nucleus 5.76 5.1
Protein Annotations
EnsemblPlants:Solyc02g091960.2.1EnsemblPlantsGene:Solyc02g091960.2ncoils:CoilPANTHER:PTHR31908PANTHER:PTHR31908:SF2SEG:seg
UniParc:UPI0002767D52UniProt:K4BCZ4MapMan:20.4.3.1:::
Description
No Description!
Coordinates
chr2:+:53171259..53177689
Molecular Weight (calculated)
55181.1 Da
IEP (calculated)
5.362
GRAVY (calculated)
-0.886
Length
486 amino acids
Sequence
(BLAST)
001: MASPGSGRLA LTPVNPTPIS GLGRVSKTPL TDEVIWKRLR EAGFDEDSIK RRDKAALIAY IAKLETELYD HQYQMGLLIL ERKEWVSKNE QSKAASESAE
101: LLYKREQAAR LSDTAEAKKL EANLKKALGI EKECVANIEK ALHEMRAECA EAKVASENKL AEAQSMMEDA QKKYTDVEEK LRKAESLEAE ASLFHRTAER
201: KLREVESRED DLRRQTLLFK SECEAKEKEI QLERQSLSER QKTLQRSQEE LLDGQALLNK REEFIFSRSQ ELNRHEKDLE DEKSNFENDI KSLNEEKRNL
301: EVKLKSLSAR EEGIIRREHE LYEKEKELLL LQGKIQSKEI DGSKQVMVNQ EATLVTKISS IERCADTLLD RTPSNKRRRE DGDFISQLTE NGASCPLPPT
401: PDAPDVENLE VLPNQTHIAA EETTVYIDKI VTVHEVTEID VRKVTEGSPG TLSGDSGRKV GNNGSLESDQ NGKPEGRARR TRATRK
Best Arabidopsis Sequence Match ( AT5G65770.1 )
(BLAST)
0001: MATSSRSERF PITPSTAATN RLTITPNSRV LKSPLTEEIM WKRLKDAGFD EQSIKNRDKA ALIAYIAKLE SEVYDYQHNM GLLLLEKNEL SSQYEEIKAS
0101: VDESDLTHMR EKSAYVSALA EAKKREESLK KDVGIAKECI SSLEKTLHEM RAECAETKVS AGSTMSEAHV MIEDALKKLA DAEAKMRAAE ALQAEANRYH
0201: RIAERKLKEV ESREDDLTRR LASFKSECET KENEMVIERQ TLNERRKSLQ QEHERLLDAQ VSLNQREDHI FARSQELAEL EKGLDTAKTT FEEERKAFED
0301: KKSNLEIALA LCAKREEAVS ERESSLLKKE QELLVAEEKI ASKESELIQN VLANQEVILR KRKSDVEAEL ECKSKSVEVE IESKRRAWEL REVDIKQRED
0401: LVGEKEHDLE VQSRALAEKE KDITEKSFNL DEKEKNLVAT EEDINRKTTM LEDEKERLRK LDLELQQSLT SLEDKRKRVD SATQKLEALK SETSELSTLE
0501: MKLKEELDDL RAQKLEMLAE ADRLKVEKAK FEAEWEHIDV KREELRKEAE YITRQREAFS MYLKDERDNI KEERDALRNQ HKNDVESLNR EREEFMNKMV
0601: EEHSEWLSKI QRERADFLLG IEMQKRELEY CIENKREELE NSSRDREKAF EQEKKLEEER IQSLKEMAEK ELEHVQVELK RLDAERLEIK LDRERREREW
0701: AELKDSVEEL KVQREKLETQ RHMLRAERDE IRHEIEELKK LENLKVALDD MSMAKMQLSN LERSWEKVSA LKQKVVSRDD ELDLQNGVST VSNSEDGYNS
0801: SMERQNGLTP SSATPFSWIK RCTNLIFKTS PEKSTLMHHY EEEGGVPSEK LKLESSRREE KAYTEGLSIA VERLEAGRKR RGNTSGDETS EPSNNKKRKH
0901: DVTQKYSDEA DTQSVISSPQ NVPEDKHELP SSQTQTPSGM VVISETVKIT RVTCETEVTN KVTTLDCSES PSEAGRKMGE ETEDGDCNQT GINASETVIH
1001: NEAATEDICT
Arabidopsis Description
LINC4little nuclei4 [Source:TAIR;Acc:AT5G65770]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.