CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77170	Soybean	cytosol	58.15	57.37
KRH58169	Soybean	nucleus	64.13	45.04
KRH04371	Soybean	cytosol	63.86	44.76
VIT_00s0558g00020.t01	Wine grape	plastid	54.21	35.72
PGSC0003DMT400055146	Potato	plastid	44.84	35.22
CDY45628	Canola	nucleus, plastid	47.69	34.99
Bra037827.1-P	Field mustard	nucleus, plastid	47.55	34.59
AT5G65780.2	Thale cress	plastid	47.42	34.28
AT5G65770.2	Thale cress	plastid	47.69	33.69
CDY08750	Canola	nucleus	24.05	32.24
Solyc02g091960.2.1	Tomato	nucleus	19.84	30.04
CDY60978	Canola	nucleus, plastid	47.28	28.59
GSMUA_Achr6P31730_001	Banana	cytosol	43.07	27.73
TraesCS3B01G337300.1	Wheat	cytosol	37.23	27.37
Zm00001d043335_P006	Maize	extracellular, mitochondrion	36.14	27.34
TraesCS3D01G302500.2	Wheat	cytosol	37.09	27.33
TraesCS3A01G299200.1	Wheat	cytosol	37.5	27.33
HORVU3Hr1G074480.3	Barley	plasma membrane	36.41	26.96
KXG33452	Sorghum	cytosol	36.41	26.85
KRH75531	Soybean	nucleus	26.22	19.94
KRH70636	Soybean	nucleus	29.48	17.93
KRH01492	Soybean	nucleus	27.72	17.13
KRH45183	Soybean	nucleus	27.04	16.71

Protein Annotations

EMBL:ACUP02006744	EnsemblPlants:KRH28315	EnsemblPlantsGene:GLYMA_11G045200	ncoils:Coil	PANTHER:PTHR31908	PANTHER:PTHR31908:SF2
ProteinID:KRH28315	ProteinID:KRH28315.1	SEG:seg	UniParc:UPI0006ED7C2D	UniProt:A0A0R0HM25	MapMan:20.4.3.1

Description

hypothetical protein

Coordinates

chr11:+:3337358..3341138

Molecular Weight (calculated)

86096.0 Da

IEP (calculated)

5.325

GRAVY (calculated)

-0.968

Length

736 amino acids

Sequence
(BLAST)

001: MATPITPDSA TLASRDPWKR LKQPAFDDNS IQRKDKIYDQ LHHMGCLIFE RKLLAFKYEQ VKASIDSSEF MHKHDSAMNL SALIEARKRE ESLKMAIGIN
101: EACIASLEKA LHEMRTECAE TKVSAESKVS EAHQLIDEAQ KKSTEAEAKL RAAESFQAEA CGYYSVADRK LRDVEAREDE LRRQIKSFKS DRSQELDSLQ
201: KELEDTKTNT NKEHGALCDE KTNLKLMEAT LTIREEALSK RESELNKKEQ ELLDLQVKLA SRESDETQKV KAVQEAELGA RKTNFEAELQ IQLKLVENEI
301: EMKRWAWELK EVDLTQREEK LQEREHELEI LSRTLGEKEK DLVDMSSALK EKDQSLRASE KELELNKVLL QKDKEEINKT KLDVQMSLVS LENNLRQFDN
401: AKERHEALKS ETNDLSVLEV KLKEEIDVVR SQKLEIVAEA DKLEAEKAKF EAQWELLDEK KEELRKEAEY IAEEKKAVSA FIKKERDKLR QEKENMRDQY
501: KRDLESLTCE REEFMNKMAH EHDDWFGKMQ QERANFLRDV EMQNRNMNIL IDKRREEIES YLKEREKSFE EEKNNQLEYI NALKEKVAKE YKQVSFEMRR
601: LEVERPEISS DCEQRNKIEI HAQTEELKKV KDLKIVSDDI ALTELLNSDM ESNQQKISMK KKLNQRTLKH DDHLNSPQKI DANKISNGFD SSFVQNSSVV
701: LPSSPVRFSW IKRCTKLVFR RSPEKSLVHD DDKGCG

Best Arabidopsis Sequence Match ( AT5G65770.1 )
(BLAST)

0001: MATSSRSERF PITPSTAATN RLTITPNSRV LKSPLTEEIM WKRLKDAGFD EQSIKNRDKA ALIAYIAKLE SEVYDYQHNM GLLLLEKNEL SSQYEEIKAS
0101: VDESDLTHMR EKSAYVSALA EAKKREESLK KDVGIAKECI SSLEKTLHEM RAECAETKVS AGSTMSEAHV MIEDALKKLA DAEAKMRAAE ALQAEANRYH
0201: RIAERKLKEV ESREDDLTRR LASFKSECET KENEMVIERQ TLNERRKSLQ QEHERLLDAQ VSLNQREDHI FARSQELAEL EKGLDTAKTT FEEERKAFED
0301: KKSNLEIALA LCAKREEAVS ERESSLLKKE QELLVAEEKI ASKESELIQN VLANQEVILR KRKSDVEAEL ECKSKSVEVE IESKRRAWEL REVDIKQRED
0401: LVGEKEHDLE VQSRALAEKE KDITEKSFNL DEKEKNLVAT EEDINRKTTM LEDEKERLRK LDLELQQSLT SLEDKRKRVD SATQKLEALK SETSELSTLE
0501: MKLKEELDDL RAQKLEMLAE ADRLKVEKAK FEAEWEHIDV KREELRKEAE YITRQREAFS MYLKDERDNI KEERDALRNQ HKNDVESLNR EREEFMNKMV
0601: EEHSEWLSKI QRERADFLLG IEMQKRELEY CIENKREELE NSSRDREKAF EQEKKLEEER IQSLKEMAEK ELEHVQVELK RLDAERLEIK LDRERREREW
0701: AELKDSVEEL KVQREKLETQ RHMLRAERDE IRHEIEELKK LENLKVALDD MSMAKMQLSN LERSWEKVSA LKQKVVSRDD ELDLQNGVST VSNSEDGYNS
0801: SMERQNGLTP SSATPFSWIK RCTNLIFKTS PEKSTLMHHY EEEGGVPSEK LKLESSRREE KAYTEGLSIA VERLEAGRKR RGNTSGDETS EPSNNKKRKH
0901: DVTQKYSDEA DTQSVISSPQ NVPEDKHELP SSQTQTPSGM VVISETVKIT RVTCETEVTN KVTTLDCSES PSEAGRKMGE ETEDGDCNQT GINASETVIH
1001: NEAATEDICT

Arabidopsis Description

LINC4little nuclei4 [Source:TAIR;Acc:AT5G65770]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.