CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH54462
KRH57009
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68790.1	KRH03376	AT1G19050.1	18642946
AT1G68790.1	KRH54462	AT1G19050.1	18642946
AT1G68790.1	KRH57009	AT1G19050.1	18642946
AT1G68790.1	KRH63457	AT1G19050.1	18642946
AT1G68790.1	KRH03376	AT3G48100.1	18642946
AT1G68790.1	KRH54462	AT3G48100.1	18642946
AT1G68790.1	KRH57009	AT3G48100.1	18642946
AT1G68790.1	KRH63457	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75531	Soybean	nucleus	73.88	92.36
VIT_01s0011g02810.t01	Wine grape	mitochondrion, plastid	44.3	46.98
CDY19387	Canola	nucleus	35.37	37.35
AT1G68790.1	Thale cress	nucleus	33.39	37.23
CDX98000	Canola	nucleus	35.7	37.02
KRH01492	Soybean	nucleus	36.36	36.94
CDY45853	Canola	cytosol	29.09	36.82
AT1G13220.3	Thale cress	nucleus	34.63	36.72
KRH45183	Soybean	nucleus	36.12	36.69
CDX81542	Canola	nucleus	29.75	36.62
Os02t0710102-01	Rice	nucleus	4.79	34.52
Bra038353.1-P	Field mustard	cytosol	28.93	32.2
GSMUA_Achr8P14400_001	Banana	cytosol	30.99	31.17
KXG30901	Sorghum	mitochondrion, nucleus	29.17	30.54
HORVU6Hr1G069560.1	Barley	nucleus	28.68	30.28
GSMUA_Achr9P21820_001	Banana	endoplasmic reticulum, golgi, plasma membrane	5.95	30.13
TraesCS6B01G303400.1	Wheat	nucleus	28.43	30.07
GSMUA_Achr11P...	Banana	nucleus	32.15	30.04
Zm00001d051600_P004	Maize	nucleus	28.84	29.91
TraesCS6D01G256200.1	Wheat	nucleus	28.26	29.79
KRH28315	Soybean	cytosol	17.93	29.48
KRH77170	Soybean	cytosol	16.2	26.27
GSMUA_Achr3P28980_001	Banana	mitochondrion	21.16	24.93
KRH58169	Soybean	nucleus	21.41	24.71
GSMUA_Achr6P09340_001	Banana	cytosol	32.56	24.67
KRH04371	Soybean	cytosol	21.07	24.29
GSMUA_Achr9P21830_001	Banana	nucleus	12.07	20.71

Protein Annotations

EMBL:ACUP02000786	EnsemblPlants:KRH70636	EnsemblPlantsGene:GLYMA_02G101800	EntrezGene:100816589	ncoils:Coil	PANTHER:PTHR31908
PANTHER:PTHR31908:SF5	ProteinID:KRH70636	ProteinID:KRH70636.1	SEG:seg	UniParc:UPI0002337783	UniProt:K7K7H5
MapMan:20.4.3.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:9646459..9655022

Molecular Weight (calculated)

138949.0 Da

IEP (calculated)

5.047

GRAVY (calculated)

-1.025

Length

1210 amino acids

Sequence
(BLAST)

0001: MFTPQRKAWP AAAAFTPLRG GSASAKGKAV AEGPPPPPLG SLTETTVAVG LDAAGDAEDW KRFTKLGLLD EAVMQRKDHE ALVEKVSRLE RELFDYQYNM
0101: GLLLIEKKEW NSKFDQLRQE LAETEEILKR EQSAHLIALF EVEKREENLK KALSTERQCG ADLERALRAM QEEHAQVKSS SHTKLAKANA LVDGIEEKSS
0201: VVDKKLLDAE AKLAEINRKN AELDMKLRQV DVRESLLQKE RLSLATDRES FEATFYKQRE DLKDWERKLK QREDMLCDGR QNLGEKEEKI VETEKNLKQK
0301: ERDLEVLEKK IDSSNSLVKE KEAEIIQRVA DLDVEEKKVN SLKSMLEMKE KELLALELKL SAREREGIEK LLGEQKATLD LKLQQVELEM EQKQKSLVEE
0401: FSSKEEALEQ REVEVNHREK KVGKEEQALN KKAERIKEQN KEIEAKLKSL KEKEKTMIIK EKELEKEKQQ LLADRESLEN LNAELEKMKA EISQKELQIC
0501: QETENLKLTE DDRAEHSRLQ LELKQEIEHT RLQKDFIMKE AENLREERQR FEKEWEVLDE KRAEITNKQH GIDMEKESLR KFQNSEEERL KSEKQHMQDH
0601: IKKELEMLES EKESFRDSMK QEKHLLSEKV KNEKAQMLQD FELKMRNLEN EIQKRQEEME KDLQERERNF QEEMQRELDN INNLKDVTEK EWEEVKAEGI
0701: RLENERKVLE SNKQQLKSGQ HEMHEDSEML MNLSRKVKKE RERLVAERKH FLELVEKLRS CKGCGEVVRD FVVSDIQLPD FKERVAIPSP ISPVLNDNPP
0801: KNSQDNIAAS EFNISGSVKP VSWLRKCTTK IFNLSPSKRA DAVGALDMPG TSPLSDVNFS VENIDEELPT SLPNIGARVI FDERQPAGGM AHHSSDTPHL
0901: QSDNIGKEVG DEYSLSVGDH SRVDSFVDGD PGDSQQSVPK LGRRKPGRKS KSGIARTRSV KAVVEEAKEF LGKAPKKIEN ASLQSLNTDH IREDSREDSS
1001: HTEKAIGNTR RKRQRAQTSR ITESEQNAGD SEGQSDSITA GGRRKKRQTV APLTQVTGEK RYNLRRHKIA GKDSSTQNIS NATKSVEKEA AAGKLEGDKN
1101: TPEVVETSLA VDDDNVQDTN LVQVSTVKTV EFSDHRAVRF ELPKDVVDDN AAATETLNRV EENGTPEYQD EDGSTIHEVE NDDDDEEEEE EEEHPGEVSI
1201: GKKIFRFFTT

Best Arabidopsis Sequence Match ( AT1G13220.3 )
(BLAST)

0001: MFTPQRKQWM SPAMTPRSET HKIGGVTNPR NADRKGKAVA FSDDLVIPTL PPPPIGTLTG QGVSRGHTDD MDMGDWRRFR EVGLLNEASM EKKDQEALLE
0101: KISTLEKELY GYQHNMGLLL MENKELVSKH EQLNQAFQEA QEILKREQSS HLYALTTVEQ REENLRKALG LEKQCVQELE KALREIQEEN SKIRLSSEAK
0201: LVEANALVAS VNGRSSDVEN KIYSAESKLA EATRKSSELK LRLKEVETRE SVLQQERLSF TKERESYEGT FQKQREYLNE WEKKLQGKEE SITEQKRNLN
0301: QREEKVNEIE KKLKLKEKEL EEWNRKVDLS MSKSKETEED ITKRLEELTT KEKEAHTLQI TLLAKENELR AFEEKLIARE GTEIQKLIDD QKEVLGSKML
0401: EFELECEEIR KSLDKELQRK IEELERQKVE IDHSEEKLEK RNQAMNKKFD RVNEKEMDLE AKLKTIKERE KIIQAEEKRL SLEKQQLLSD KESLEDLQQE
0501: IEKIRAEMTK KEEMIEEECK SLEIKKEERE EYLRLQSELK SQIEKSRVHE EFLSKEVENL KQEKERFEKE WEILDEKQAV YNKERIRISE EKEKFERFQL
0601: LEGERLKKEE SALRVQIMQE LDDIRLQRES FEANMEHERS ALQEKVKLEQ SKVIDDLEMM RRNLEIELQE RKEQDEKDLL DRMAQFEDKR MAELSDINHQ
0701: KQALNREMEE MMSKRSALQK ESEEIAKHKD KLKEQQVEMH NDISELSTLS INLKKRREVF GRERSRFLAF VQKLKDCGSC GQLVNDFVLS DLQLPSNDEV
0801: AILPPIGVLN DLPGSSNASD SCNIKKSLDG DASGSGGSRR PSMSILQKCT SIIFSPSKRV EHGIDTGKPE QRLSSSVAVG METKGEKPLP VDLRLRPSSS
0901: SIPEEDEEYT DSRVQETSEG SQLSEFQSSR RGRGRPRKAK PALNPTSSVK HASLEESSKD ELSGHVSVTS KKTTGGGGRK RQHIDDTATG GKRRRQQTVA
1001: VLPQTPGQRH YNLRRKKTVD QVPADVEDNA AAGEDDADIA ASAPSKDTVE ETVVETLRAR RIETNADVVS AENNGDVPVA NVEPTVNEDT NEDGDEEEDE
1101: AQDDDNEENQ DDDDDDDGDD DGSPRPGEGS IRKKLWTFLT T

Arabidopsis Description

LINC2nuclear matrix constituent protein-related [Source:TAIR;Acc:AT1G13220]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.