Factsheet for GSMUA_Achr9P21820_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

plastid 2
endoplasmic reticulum 4
nucleus 1
extracellular 3
vacuole 3
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67849	Canola	cytosol, mitochondrion, nucleus, plastid	30.96	24.1
CDY12630	Canola	mitochondrion	27.62	15.0
GSMUA_Achr3P28980_001	Banana	mitochondrion	50.21	11.68
CDX96106	Canola	cytosol	33.89	10.41
VIT_01s0011g02810.t01	Wine grape	mitochondrion, plastid	36.82	7.71
Bra004210.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	33.89	7.59
CDY01790	Canola	cytosol, mitochondrion, nucleus, plastid	34.73	7.57
GSMUA_Achr8P14400_001	Banana	cytosol	37.66	7.48
PGSC0003DMT400026042	Potato	cytosol, mitochondrion, nucleus, plastid	35.15	7.39
Solyc02g089800.2.1	Tomato	nucleus	32.64	7.18
KRH75531	Soybean	nucleus	28.87	7.13
CDY12631	Canola	golgi, mitochondrion, nucleus, plastid	28.87	7.12
Solyc03g045050.2.1	Tomato	nucleus	34.73	7.11
KRH45183	Soybean	nucleus	34.73	6.97
KRH01492	Soybean	nucleus	34.73	6.97
PGSC0003DMT400008676	Potato	cytosol	31.8	6.95
CDY46040	Canola	cytosol	31.38	6.89
VIT_14s0006g03280.t01	Wine grape	nucleus	35.98	6.83
CDY45853	Canola	cytosol	27.2	6.8
AT1G67230.1	Thale cress	nucleus	31.8	6.71
Bra034012.1-P	Field mustard	cytosol	30.96	6.64
CDX81542	Canola	nucleus	26.78	6.51
GSMUA_Achr11P...	Banana	nucleus	34.73	6.41
AT1G13220.3	Thale cress	nucleus	29.71	6.22
CDY19387	Canola	nucleus	29.71	6.2
CDX98000	Canola	nucleus	29.71	6.08
Bra038353.1-P	Field mustard	cytosol	27.62	6.07
KRH70636	Soybean	nucleus	30.13	5.95
AT1G68790.1	Thale cress	nucleus	25.1	5.53
GSMUA_Achr6P31730_001	Banana	cytosol	25.1	5.25
GSMUA_Achr6P09340_001	Banana	cytosol	34.73	5.2
GSMUA_Achr9P21830_001	Banana	nucleus	3.35	1.13
CDY67848	Canola	nucleus	2.51	0.78

Protein Annotations

EnsemblPlants:GSMUA_Achr9P21820_001	EnsemblPlants:GSMUA_Achr9T21820_001	EnsemblPlantsGene:GSMUA_Achr9G21820_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Nucleoporin_NSP1_C	ncoils:Coil	PANTHER:PTHR31908	PANTHER:PTHR31908:SF3	PFAM:PF05064	TMHMM:TMhelix
UniParc:UPI000295D7D8	UniProt:M0U2E1	MapMan:20.4.3.1	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G21820_001]

Coordinates

chr9:+:26961804..26963206

Molecular Weight (calculated)

28431.7 Da

IEP (calculated)

9.363

GRAVY (calculated)

-0.220

Length

239 amino acids

Sequence
(BLAST)

001: MCLHYVFLYT YCIYFSGHIC RHPFFISIYC FIYILLVNCF SSWNTYPILY QYQYHMGLLL IEKKESAAKY KKLWQEMSEA VQIQKHMQAA HNVAVSEFEK
101: KEEDMRRAMR FQRQYSIYFS ISVLSIYFIF FVQLEKALNE MHAEVAEAKL ESQKKLFELH ALEATVEEKY LEAKGKLHSL NARLAEVSRK SSEIDRRLQD
201: VEAQKTHLRR ILHNKERVCK LGNRSCRIVR RSLPGGIAF

Best Arabidopsis Sequence Match ( AT1G67230.1 )
(BLAST)

0001: MSTPLKVWQR WSTPTKATNP DSNGSSHGTG LDMVTPVSGR VSEIQFDDPR ILPEKISELE KELFEYQHSM GLLLIEKKEW SSQYEALQQA FEEVNECLKQ
0101: ERNAHLIAIA DVEKREEGLR KALGIEKQCA LDLEKALKEL RAENAEIKFT ADSKLTEANA LVRSVEEKSL EVEAKLRAVD AKLAEVSRKS SDVERKAKEV
0201: EARESSLQRE RFSYIAEREA DEATLSKQRE DLREWERKLQ EGEERVAKSQ MIVKQREDRA NESDKIIKQK GKELEEAQKK IDAANLAVKK LEDDVSSRIK
0301: DLALREQETD VLKKSIETKA RELQALQEKL EAREKMAVQQ LVDEHQAKLD STQREFELEM EQKRKSIDDS LKSKVAEVEK REAEWKHMEE KVAKREQALD
0401: RKLEKHKEKE NDFDLRLKGI SGREKALKSE EKALETEKKK LLEDKEIILN LKALVEKVSG ENQAQLSEIN KEKDELRVTE EERSEYLRLQ TELKEQIEKC
0501: RSQQELLQKE AEDLKAQRES FEKEWEELDE RKAKIGNELK NITDQKEKLE RHIHLEEERL KKEKQAANEN MERELETLEV AKASFAETME YERSMLSKKA
0601: ESERSQLLHD IEMRKRKLES DMQTILEEKE RELQAKKKLF EEEREKELSN INYLRDVARR EMMDMQNERQ RIEKEKLEVD SSKNHLEEQQ TEIRKDVDDL
0701: VALTKKLKEQ REQFISERSR FLSSMESNRN CSRCGELLSE LVLPEIDNLE MPNMSKLANI LDNEAPRQEM RDISPTAAGL GLPVTGGKVS WFRKCTSKML
0801: KLSPIKMTEP SVTWNLADQE PQSTEQANVG GPSTTVQAAT TYSFDVQKAE SETGTKEVEV TNVNSDGDQS DINSKAQEVA ADSLSNLDVD GQSRMKGKGK
0901: ARTRRTRSVK DVVDDAKALY GESINLYEPN DSTENVDDST KASTGETGRS DKAISKNGRK RGRVGSLRTC TTEQDGNESD GKSDSVTGGA HQRKRRQKVA
1001: SEQQGEVVGQ RYNLRRPRRV TGEPALSKKN EDIGGVQQEE GIHCTQATAT ASVGVAVSDN GVSTNVVQHE ATADSEDTDA GSPKRTDESE AMSEDVNKTP
1101: LRADSDGEDD ESDAEHPGKV SIGKKLWTFL TT

Arabidopsis Description

CRWN1Protein CROWDED NUCLEI 1 [Source:UniProtKB/Swiss-Prot;Acc:F4HRT5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.