Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67848 | Canola | nucleus | 69.54 | 96.11 |
| CDY67849 | Canola | cytosol, mitochondrion, nucleus, plastid | 27.65 | 96.09 |
| Bra034012.1-P | Field mustard | cytosol | 73.76 | 70.58 |
| AT1G67230.1 | Thale cress | nucleus | 70.38 | 66.34 |
| VIT_14s0006g03280.t01 | Wine grape | nucleus | 50.23 | 42.57 |
| PGSC0003DMT400026042 | Potato | cytosol, mitochondrion, nucleus, plastid | 44.89 | 42.13 |
| Solyc02g089800.2.1 | Tomato | nucleus | 42.55 | 41.8 |
| KRH01492 | Soybean | nucleus | 45.64 | 40.89 |
| Os02t0710102-01 | Rice | nucleus | 6.37 | 40.48 |
| PGSC0003DMT400008676 | Potato | cytosol | 41.42 | 40.4 |
| KRH45183 | Soybean | nucleus | 45.08 | 40.39 |
| Solyc03g045050.2.1 | Tomato | nucleus | 43.58 | 39.85 |
| GSMUA_Achr9P21820_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 7.59 | 33.89 |
| GSMUA_Achr8P14400_001 | Banana | cytosol | 35.05 | 31.09 |
| KXG30901 | Sorghum | mitochondrion, nucleus | 32.8 | 30.28 |
| TraesCS6D01G256200.1 | Wheat | nucleus | 32.52 | 30.23 |
| TraesCS6B01G303400.1 | Wheat | nucleus | 32.24 | 30.07 |
| HORVU6Hr1G069560.1 | Barley | nucleus | 31.86 | 29.67 |
| Zm00001d051600_P004 | Maize | nucleus | 32.43 | 29.65 |
| Bra038353.1-P | Field mustard | cytosol | 29.62 | 29.07 |
| GSMUA_Achr11P... | Banana | nucleus | 34.49 | 28.42 |
| GSMUA_Achr3P28980_001 | Banana | mitochondrion | 23.71 | 24.63 |
| Bra037827.1-P | Field mustard | nucleus, plastid | 22.21 | 23.42 |
| GSMUA_Achr6P09340_001 | Banana | cytosol | 33.18 | 22.17 |
| GSMUA_Achr9P21830_001 | Banana | nucleus | 10.87 | 16.45 |
Protein Annotations
Description
AT1G67230 (E=0.0) LINC1 | LINC1 (LITTLE NUCLEI1)
Coordinates
chrA07:-:17434301..17438590
Molecular Weight (calculated)
122169.0 Da
IEP (calculated)
4.880
GRAVY (calculated)
-1.102
Length
1067 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSTPLKVWQR WSTPTKATNP DSNGKVSGMV SEIQYEDDPR RLPDRVSELE KELFEYQHNM GLLLLEKKEW SSKFEELQDE FDEANQCLKR ERNAHMVAMA
0101: DVEKREEGLR KALGIEKQCA LDLEKALREL RSENAEIKFT ADSKLMEANA LVRSVEEKSL EVEAKLRAVD ARLAEVSRKS SEVERRSKDV EARESSLQRE
0201: RFSHITEREA EEASLTKQRE DLREWERKLQ EGEERVAKSQ MMVKQREDRA NESDKIIKQK GKELEEAQKK IDAANFALKK KEDDISSRIK ALALREQVAV
0301: QQLIDEHQAK LEAAQREFEM EMEQKRKSVD DSLRSKVAEV EKRDAEWKHM EEKVAKREQA LDKKLEKHKE KEKDFEERLK GVTGREKALK SEEKALETEK
0401: RKLAEDKENI LSLIAEVEKI KAENEVHLSE IRKEKEELKV TEEERSEYLR LQTELKEQIE KCRSQQELLS KEVEDLKAQR ECFEKEWEEL DEKKAEIETE
0501: LKNLADQKEK LERNTHLEEE RLRKEKQEAI DNMKREVETL EVAKAAFADT MEHERSVISK KAESERSQLL HDVEMLKRKL ESDMQSKLEE RERELQAKEK
0601: LFEEEREKEL SNINYLRDVA RREMTEVQSD RQRIQKEKVE IDASKKILEE QQTEIRKDVD DLVALTKKLK EQREQFISER NRFLSSMESN RNCSNPCGEL
0701: LAALPEIDNL ELPNLSKLEN ILQDEAPRQE LKDISPTATD LGLPVQGGTV SWLRKCTSKI LKLSPIKMAD TSAFPDQEPQ STEQGNVNSG PSTMLPAQSE
0801: NDTREVEVSD GDQSNIDSKA QEVAADSLSN LNADGQSRLR GKARIRRTRS VKAVVEDAKA IYGKSIEFNE ADDGSMGEPG RSDKGGVSKN GRKRGRVGSL
0901: RTCTSEQDGN ESDGKSDSVT GGEHQRGKRR QKVASEEQEV VGQRYNLRRS RRVAGKTAIG KKNEEADGVQ QQEEGVHCAQ TTATASVGVA VSDNGVTANV
1001: VEIEGMADSE ETDAGSPKRT GESAAASEED VNRTPEREYD GEEEDESDTE HPGNVSIGKK LWTFLTT
0101: DVEKREEGLR KALGIEKQCA LDLEKALREL RSENAEIKFT ADSKLMEANA LVRSVEEKSL EVEAKLRAVD ARLAEVSRKS SEVERRSKDV EARESSLQRE
0201: RFSHITEREA EEASLTKQRE DLREWERKLQ EGEERVAKSQ MMVKQREDRA NESDKIIKQK GKELEEAQKK IDAANFALKK KEDDISSRIK ALALREQVAV
0301: QQLIDEHQAK LEAAQREFEM EMEQKRKSVD DSLRSKVAEV EKRDAEWKHM EEKVAKREQA LDKKLEKHKE KEKDFEERLK GVTGREKALK SEEKALETEK
0401: RKLAEDKENI LSLIAEVEKI KAENEVHLSE IRKEKEELKV TEEERSEYLR LQTELKEQIE KCRSQQELLS KEVEDLKAQR ECFEKEWEEL DEKKAEIETE
0501: LKNLADQKEK LERNTHLEEE RLRKEKQEAI DNMKREVETL EVAKAAFADT MEHERSVISK KAESERSQLL HDVEMLKRKL ESDMQSKLEE RERELQAKEK
0601: LFEEEREKEL SNINYLRDVA RREMTEVQSD RQRIQKEKVE IDASKKILEE QQTEIRKDVD DLVALTKKLK EQREQFISER NRFLSSMESN RNCSNPCGEL
0701: LAALPEIDNL ELPNLSKLEN ILQDEAPRQE LKDISPTATD LGLPVQGGTV SWLRKCTSKI LKLSPIKMAD TSAFPDQEPQ STEQGNVNSG PSTMLPAQSE
0801: NDTREVEVSD GDQSNIDSKA QEVAADSLSN LNADGQSRLR GKARIRRTRS VKAVVEDAKA IYGKSIEFNE ADDGSMGEPG RSDKGGVSKN GRKRGRVGSL
0901: RTCTSEQDGN ESDGKSDSVT GGEHQRGKRR QKVASEEQEV VGQRYNLRRS RRVAGKTAIG KKNEEADGVQ QQEEGVHCAQ TTATASVGVA VSDNGVTANV
1001: VEIEGMADSE ETDAGSPKRT GESAAASEED VNRTPEREYD GEEEDESDTE HPGNVSIGKK LWTFLTT
0001: MSTPLKVWQR WSTPTKATNP DSNGSSHGTG LDMVTPVSGR VSEIQFDDPR ILPEKISELE KELFEYQHSM GLLLIEKKEW SSQYEALQQA FEEVNECLKQ
0101: ERNAHLIAIA DVEKREEGLR KALGIEKQCA LDLEKALKEL RAENAEIKFT ADSKLTEANA LVRSVEEKSL EVEAKLRAVD AKLAEVSRKS SDVERKAKEV
0201: EARESSLQRE RFSYIAEREA DEATLSKQRE DLREWERKLQ EGEERVAKSQ MIVKQREDRA NESDKIIKQK GKELEEAQKK IDAANLAVKK LEDDVSSRIK
0301: DLALREQETD VLKKSIETKA RELQALQEKL EAREKMAVQQ LVDEHQAKLD STQREFELEM EQKRKSIDDS LKSKVAEVEK REAEWKHMEE KVAKREQALD
0401: RKLEKHKEKE NDFDLRLKGI SGREKALKSE EKALETEKKK LLEDKEIILN LKALVEKVSG ENQAQLSEIN KEKDELRVTE EERSEYLRLQ TELKEQIEKC
0501: RSQQELLQKE AEDLKAQRES FEKEWEELDE RKAKIGNELK NITDQKEKLE RHIHLEEERL KKEKQAANEN MERELETLEV AKASFAETME YERSMLSKKA
0601: ESERSQLLHD IEMRKRKLES DMQTILEEKE RELQAKKKLF EEEREKELSN INYLRDVARR EMMDMQNERQ RIEKEKLEVD SSKNHLEEQQ TEIRKDVDDL
0701: VALTKKLKEQ REQFISERSR FLSSMESNRN CSRCGELLSE LVLPEIDNLE MPNMSKLANI LDNEAPRQEM RDISPTAAGL GLPVTGGKVS WFRKCTSKML
0801: KLSPIKMTEP SVTWNLADQE PQSTEQANVG GPSTTVQAAT TYSFDVQKAE SETGTKEVEV TNVNSDGDQS DINSKAQEVA ADSLSNLDVD GQSRMKGKGK
0901: ARTRRTRSVK DVVDDAKALY GESINLYEPN DSTENVDDST KASTGETGRS DKAISKNGRK RGRVGSLRTC TTEQDGNESD GKSDSVTGGA HQRKRRQKVA
1001: SEQQGEVVGQ RYNLRRPRRV TGEPALSKKN EDIGGVQQEE GIHCTQATAT ASVGVAVSDN GVSTNVVQHE ATADSEDTDA GSPKRTDESE AMSEDVNKTP
1101: LRADSDGEDD ESDAEHPGKV SIGKKLWTFL TT
0101: ERNAHLIAIA DVEKREEGLR KALGIEKQCA LDLEKALKEL RAENAEIKFT ADSKLTEANA LVRSVEEKSL EVEAKLRAVD AKLAEVSRKS SDVERKAKEV
0201: EARESSLQRE RFSYIAEREA DEATLSKQRE DLREWERKLQ EGEERVAKSQ MIVKQREDRA NESDKIIKQK GKELEEAQKK IDAANLAVKK LEDDVSSRIK
0301: DLALREQETD VLKKSIETKA RELQALQEKL EAREKMAVQQ LVDEHQAKLD STQREFELEM EQKRKSIDDS LKSKVAEVEK REAEWKHMEE KVAKREQALD
0401: RKLEKHKEKE NDFDLRLKGI SGREKALKSE EKALETEKKK LLEDKEIILN LKALVEKVSG ENQAQLSEIN KEKDELRVTE EERSEYLRLQ TELKEQIEKC
0501: RSQQELLQKE AEDLKAQRES FEKEWEELDE RKAKIGNELK NITDQKEKLE RHIHLEEERL KKEKQAANEN MERELETLEV AKASFAETME YERSMLSKKA
0601: ESERSQLLHD IEMRKRKLES DMQTILEEKE RELQAKKKLF EEEREKELSN INYLRDVARR EMMDMQNERQ RIEKEKLEVD SSKNHLEEQQ TEIRKDVDDL
0701: VALTKKLKEQ REQFISERSR FLSSMESNRN CSRCGELLSE LVLPEIDNLE MPNMSKLANI LDNEAPRQEM RDISPTAAGL GLPVTGGKVS WFRKCTSKML
0801: KLSPIKMTEP SVTWNLADQE PQSTEQANVG GPSTTVQAAT TYSFDVQKAE SETGTKEVEV TNVNSDGDQS DINSKAQEVA ADSLSNLDVD GQSRMKGKGK
0901: ARTRRTRSVK DVVDDAKALY GESINLYEPN DSTENVDDST KASTGETGRS DKAISKNGRK RGRVGSLRTC TTEQDGNESD GKSDSVTGGA HQRKRRQKVA
1001: SEQQGEVVGQ RYNLRRPRRV TGEPALSKKN EDIGGVQQEE GIHCTQATAT ASVGVAVSDN GVSTNVVQHE ATADSEDTDA GSPKRTDESE AMSEDVNKTP
1101: LRADSDGEDD ESDAEHPGKV SIGKKLWTFL TT
Arabidopsis Description
CRWN1Protein CROWDED NUCLEI 1 [Source:UniProtKB/Swiss-Prot;Acc:F4HRT5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.