CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45183	Soybean	nucleus	83.96	83.96
CDY67849	Canola	cytosol, mitochondrion, nucleus, plastid	14.78	57.33
CDX96106	Canola	cytosol	34.42	52.7
VIT_14s0006g03280.t01	Wine grape	nucleus	51.05	48.29
CDY01790	Canola	cytosol, mitochondrion, nucleus, plastid	42.15	45.76
CDY12631	Canola	golgi, mitochondrion, nucleus, plastid	37.2	45.72
Bra004210.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	40.89	45.64
Solyc02g089800.2.1	Tomato	nucleus	40.72	44.66
AT1G67230.1	Thale cress	nucleus	42.4	44.61
PGSC0003DMT400026042	Potato	cytosol, mitochondrion, nucleus, plastid	42.32	44.33
CDY12630	Canola	mitochondrion	16.37	44.32
PGSC0003DMT400008676	Potato	cytosol	40.64	44.24
Os02t0710102-01	Rice	nucleus	6.21	44.05
Bra034012.1-P	Field mustard	cytosol	40.89	43.68
Solyc03g045050.2.1	Tomato	nucleus	42.65	43.53
CDY46040	Canola	cytosol	39.55	43.25
KRH75531	Soybean	nucleus	33.17	40.81
CDY67848	Canola	nucleus	26.2	40.41
KRH70636	Soybean	nucleus	36.94	36.36
GSMUA_Achr9P21820_001	Banana	endoplasmic reticulum, golgi, plasma membrane	6.97	34.73
GSMUA_Achr8P14400_001	Banana	cytosol	34.59	34.25
KXG30901	Sorghum	mitochondrion, nucleus	31.82	32.79
TraesCS6D01G256200.1	Wheat	nucleus	31.4	32.58
GSMUA_Achr11P...	Banana	nucleus	35.1	32.28
HORVU6Hr1G069560.1	Barley	nucleus	30.9	32.11
TraesCS6B01G303400.1	Wheat	nucleus	30.81	32.08
Zm00001d051600_P004	Maize	nucleus	31.23	31.88
KRH28315	Soybean	cytosol	17.13	27.72
KRH77170	Soybean	cytosol	17.04	27.21
GSMUA_Achr3P28980_001	Banana	mitochondrion	22.33	25.9
GSMUA_Achr6P09340_001	Banana	cytosol	33.67	25.11
KRH58169	Soybean	nucleus	20.91	23.76
KRH04371	Soybean	cytosol	20.82	23.62
GSMUA_Achr9P21830_001	Banana	nucleus	11.59	19.57

Protein Annotations

EMBL:ACUP02011516	EnsemblPlants:KRH01492	EnsemblPlantsGene:GLYMA_18G280500	EntrezGene:100803601	ncoils:Coil	PANTHER:PTHR31908
PANTHER:PTHR31908:SF3	ProteinID:KRH01490.1	ProteinID:KRH01491.1	ProteinID:KRH01492	ProteinID:KRH01492.1	SEG:seg
UniParc:UPI000233EFB1	UniProt:K7MV72	MapMan:20.4.3.1	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:56128100..56135781

Molecular Weight (calculated)

135754.0 Da

IEP (calculated)

4.860

GRAVY (calculated)

-1.029

Length

1191 amino acids

Sequence
(BLAST)

0001: MFTPQRVWSG WSLTSNRSGV RGGTGSGSDL GPNSGDGAST KGKGVALVEN GGNLDREVLV ERVSSLEKEL YEYQFNMGLL LIEKKEWNSK YTELSQDLVE
0101: VKDALDREKA AHLIALSEAE KREENLRKAL GVEKECVLDL EKALREMRSE HAKIKFTADS KLAEANALVA SIEEKSLEVE AKLRSADAKF AEISRKSSEF
0201: DRKSLDLESQ ESALRRDRLS FIAEQEAHES TLSKQREDLR EWEKKLQEGE ERLAKGQRII NEREQRANEN DRLCRQKEKD LEEAQKKIDA TNVTLRNKED
0301: DVNNRFANIT LKEKEYDSLR INLDIKEKEL SAWEEKLNAR EKVEMQKLLD EQNTILDVKK QEFEVELDEK RKSFEDGLKN KLVEVEKKEA EITHAEEKVV
0401: KREQALGKKA EKLKEKEIEY EQKVKALKEK EKLIKSEEKS LETEKRKIES EREELLTHKA EVEKIRANNE EELLRINEEI DRLKVTEEER SEYLRLQSQL
0501: KHEVDQYRHQ KELLLKEAED LRQQKETFER EWDELDLKRT DVEKELKSVV QQKEELLKLQ QYEEEKLKNE KQDTQAYVQR ELETLKLAKE SFAAEMELEK
0601: SSLAEKALSE RNQMLLDFEL QKKELEADMH NQLEQKEKDL IERKKLFEEK RESELNNINF LREVANREMD EMKLQRSKSE KEKQEADENK KHLERQRMEM
0701: QEDIDVLVDL NRKLKNQREE FIVERRRFIE FVEKLRSCQN CGEMISEFVL SDLQSSVDIE NLEVPSHPKL AADIVQGVSN ENLASSRQNT GVSPATDPKS
0801: PVSGGTVSWL RKCTSKIFKI SPIRKIESED SGTLRDVVTL SVEKTNVEDS PGRIPDAENE AELSFAVVND SFDVQRVQSG NDIVEVEADH EPSVENLNNV
0901: DSKAPEDLQA PDSKVGQQKS RKGGGRPRVK RTHTVKAVIK EARGILGESA EALPGESVDD HENEFPNGNA EDSANVNSES QKPSNRRIPA NVRKRNRVQT
1001: SSQMTVSGHG GDASEGHSDS LIPGQRKRRR QKAAAPPAQT AGESRYNLRR PKIGATTSSV RAMSGGGKES QGEVDRVKDT GEGIVDSKTS HSHSVGITNE
1101: NGGSIHLEQS LKGAETRDGY GGDTIGTFVN NMALSEEVNG TADDVEENDA EYRSESHGED AAGGVENEDD EDYLQPGEAS IGKKLWNFFT T

Best Arabidopsis Sequence Match ( AT1G67230.1 )
(BLAST)

0001: MSTPLKVWQR WSTPTKATNP DSNGSSHGTG LDMVTPVSGR VSEIQFDDPR ILPEKISELE KELFEYQHSM GLLLIEKKEW SSQYEALQQA FEEVNECLKQ
0101: ERNAHLIAIA DVEKREEGLR KALGIEKQCA LDLEKALKEL RAENAEIKFT ADSKLTEANA LVRSVEEKSL EVEAKLRAVD AKLAEVSRKS SDVERKAKEV
0201: EARESSLQRE RFSYIAEREA DEATLSKQRE DLREWERKLQ EGEERVAKSQ MIVKQREDRA NESDKIIKQK GKELEEAQKK IDAANLAVKK LEDDVSSRIK
0301: DLALREQETD VLKKSIETKA RELQALQEKL EAREKMAVQQ LVDEHQAKLD STQREFELEM EQKRKSIDDS LKSKVAEVEK REAEWKHMEE KVAKREQALD
0401: RKLEKHKEKE NDFDLRLKGI SGREKALKSE EKALETEKKK LLEDKEIILN LKALVEKVSG ENQAQLSEIN KEKDELRVTE EERSEYLRLQ TELKEQIEKC
0501: RSQQELLQKE AEDLKAQRES FEKEWEELDE RKAKIGNELK NITDQKEKLE RHIHLEEERL KKEKQAANEN MERELETLEV AKASFAETME YERSMLSKKA
0601: ESERSQLLHD IEMRKRKLES DMQTILEEKE RELQAKKKLF EEEREKELSN INYLRDVARR EMMDMQNERQ RIEKEKLEVD SSKNHLEEQQ TEIRKDVDDL
0701: VALTKKLKEQ REQFISERSR FLSSMESNRN CSRCGELLSE LVLPEIDNLE MPNMSKLANI LDNEAPRQEM RDISPTAAGL GLPVTGGKVS WFRKCTSKML
0801: KLSPIKMTEP SVTWNLADQE PQSTEQANVG GPSTTVQAAT TYSFDVQKAE SETGTKEVEV TNVNSDGDQS DINSKAQEVA ADSLSNLDVD GQSRMKGKGK
0901: ARTRRTRSVK DVVDDAKALY GESINLYEPN DSTENVDDST KASTGETGRS DKAISKNGRK RGRVGSLRTC TTEQDGNESD GKSDSVTGGA HQRKRRQKVA
1001: SEQQGEVVGQ RYNLRRPRRV TGEPALSKKN EDIGGVQQEE GIHCTQATAT ASVGVAVSDN GVSTNVVQHE ATADSEDTDA GSPKRTDESE AMSEDVNKTP
1101: LRADSDGEDD ESDAEHPGKV SIGKKLWTFL TT

Arabidopsis Description

CRWN1Protein CROWDED NUCLEI 1 [Source:UniProtKB/Swiss-Prot;Acc:F4HRT5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.