Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH70636 | Soybean | nucleus | 92.36 | 73.88 |
| VIT_01s0011g02810.t01 | Wine grape | mitochondrion, plastid | 45.97 | 39.0 |
| Os02t0710102-01 | Rice | nucleus | 6.2 | 35.71 |
| KRH01492 | Soybean | nucleus | 40.81 | 33.17 |
| KRH45183 | Soybean | nucleus | 40.39 | 32.83 |
| AT1G13220.3 | Thale cress | nucleus | 37.5 | 31.81 |
| AT1G68790.1 | Thale cress | nucleus | 35.23 | 31.43 |
| CDY19387 | Canola | nucleus | 37.09 | 31.33 |
| CDY45853 | Canola | cytosol | 30.48 | 30.86 |
| CDX98000 | Canola | nucleus | 37.19 | 30.85 |
| CDX81542 | Canola | nucleus | 30.99 | 30.52 |
| GSMUA_Achr9P21820_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 7.13 | 28.87 |
| Bra038353.1-P | Field mustard | cytosol | 30.37 | 27.05 |
| KXG30901 | Sorghum | mitochondrion, nucleus | 32.02 | 26.82 |
| HORVU6Hr1G069560.1 | Barley | nucleus | 31.41 | 26.53 |
| KRH28315 | Soybean | cytosol | 19.94 | 26.22 |
| Zm00001d051600_P004 | Maize | nucleus | 31.51 | 26.14 |
| GSMUA_Achr8P14400_001 | Banana | cytosol | 32.33 | 26.02 |
| TraesCS6B01G303400.1 | Wheat | nucleus | 30.68 | 25.96 |
| TraesCS6D01G256200.1 | Wheat | nucleus | 30.79 | 25.96 |
| GSMUA_Achr11P... | Banana | nucleus | 33.68 | 25.17 |
| KRH77170 | Soybean | cytosol | 18.49 | 23.99 |
| GSMUA_Achr3P28980_001 | Banana | mitochondrion | 23.04 | 21.71 |
| KRH58169 | Soybean | nucleus | 23.35 | 21.56 |
| GSMUA_Achr6P09340_001 | Banana | cytosol | 35.02 | 21.23 |
| KRH04371 | Soybean | cytosol | 22.83 | 21.05 |
| GSMUA_Achr9P21830_001 | Banana | nucleus | 13.84 | 19.01 |
Protein Annotations
| EMBL:ACUP02000373 | EnsemblPlants:KRH75531 | EnsemblPlantsGene:GLYMA_01G090100 | ncoils:Coil | PANTHER:PTHR31908 | PANTHER:PTHR31908:SF5 |
| ProteinID:KRH75531 | ProteinID:KRH75531.1 | SEG:seg | UniParc:UPI0006EDA418 | UniProt:A0A0R0LFC6 | MapMan:20.4.3.1 |
Description
hypothetical protein
Coordinates
chr1:+:27238164..27243891
Molecular Weight (calculated)
112134.0 Da
IEP (calculated)
5.412
GRAVY (calculated)
-1.005
Length
968 amino acids
Sequence
(BLAST)
(BLAST)
001: MQRKDHEALV EKVSRLEREL FDYQYNMDLL LIEKKEWSSM FDQLGQELAE TQEILKREQS AHLIALFEVE KREENLKKAL STERQCGADL ERALRAIQEE
101: HAQVQSFSHT KLAEANALVD GIEEKSLAVD KKLLDAEAKL AEINRKNAEL DMKLRQVDVQ ESLLQKERLS LATDRESFEA TFYKQREDLK DWERKLKQRE
201: DMLCDGRQNL GEKEEKIVET EKNLRQKERD LEVLEKKIDS SNSLLKGKEA EIIKRVADLD VEEKKADSLK SMLEMKEKEL LALELKLSAR EREGIENLLG
301: EQKATLDLKL QQVELEMEQK QKSLVEEFSS KEEVFEQREV EVNRREKKVG KEEQALNKKT ERIKEQNKEI EAKLKSLKEK EKTMIIKEKE LEKEKQKLLA
401: DRESLENLNA ELGKMKAEIS QKELQICQET ENLKLTEDDR AEHSHLQLEL KQEIEHTRLQ KDFIMKEAEN LREERQRFEK EKLQNSEERL KSEKQHMQDH
501: IKKELEKLVL EKESFRDSMK QEKHLLSEKV KNEKAQMLQD FESKTRNLEN EIQKRQEEME KDLQERERNF QEEMLRELDN INNLKDVIEK EWEEVKAEGI
601: RLENERKELE SNKQQLKSGQ HEMHEDSEML MSLSRKVKKE RECLVAERKH FLELVEKLRS CKGCGEVVRD FVVSDIQLPD FTERVAIPSP ISPVLNDKPP
701: KNSQDNVASS EFNISGSVRP VSWLRKCTTK IFNLSPSKIA DAVGASDMAG TSPLSDVNFS VENIDALPAS LPNIGARVIF DERQPAGGMA HHSSDTPHLQ
801: SDNIDKEVGD EYSLSIGDHS HVDSFIDGDP GDSQQSVPKL GRCKPGRKSK SGIARTCSVK AVVEEAKEFL GKDPKKIENA SLQSLNTDHI REDSREDSSF
901: TEKAIGNTRR KRQWAQTSRI TETELNAGDS EGHSDSITAG GCRKKRQTVA PLTQVTGEKR YNLRRHKT
101: HAQVQSFSHT KLAEANALVD GIEEKSLAVD KKLLDAEAKL AEINRKNAEL DMKLRQVDVQ ESLLQKERLS LATDRESFEA TFYKQREDLK DWERKLKQRE
201: DMLCDGRQNL GEKEEKIVET EKNLRQKERD LEVLEKKIDS SNSLLKGKEA EIIKRVADLD VEEKKADSLK SMLEMKEKEL LALELKLSAR EREGIENLLG
301: EQKATLDLKL QQVELEMEQK QKSLVEEFSS KEEVFEQREV EVNRREKKVG KEEQALNKKT ERIKEQNKEI EAKLKSLKEK EKTMIIKEKE LEKEKQKLLA
401: DRESLENLNA ELGKMKAEIS QKELQICQET ENLKLTEDDR AEHSHLQLEL KQEIEHTRLQ KDFIMKEAEN LREERQRFEK EKLQNSEERL KSEKQHMQDH
501: IKKELEKLVL EKESFRDSMK QEKHLLSEKV KNEKAQMLQD FESKTRNLEN EIQKRQEEME KDLQERERNF QEEMLRELDN INNLKDVIEK EWEEVKAEGI
601: RLENERKELE SNKQQLKSGQ HEMHEDSEML MSLSRKVKKE RECLVAERKH FLELVEKLRS CKGCGEVVRD FVVSDIQLPD FTERVAIPSP ISPVLNDKPP
701: KNSQDNVASS EFNISGSVRP VSWLRKCTTK IFNLSPSKIA DAVGASDMAG TSPLSDVNFS VENIDALPAS LPNIGARVIF DERQPAGGMA HHSSDTPHLQ
801: SDNIDKEVGD EYSLSIGDHS HVDSFIDGDP GDSQQSVPKL GRCKPGRKSK SGIARTCSVK AVVEEAKEFL GKDPKKIENA SLQSLNTDHI REDSREDSSF
901: TEKAIGNTRR KRQWAQTSRI TETELNAGDS EGHSDSITAG GCRKKRQTVA PLTQVTGEKR YNLRRHKT
001: MFTPQRKQWM SPAMTPRSET HKIGGVTNPR NADRKGKAVA FSDDLVIPTL PPPPIGTLTG QGVSRGHTDD MDMGDWRRFR EVGLLNEASM EKKDQEALLE
101: KISTLEKELY GYQHNMGLLL MENKELVSKH EQLNQAFQEA QEILKREQSS HLYALTTVEQ REENLRKALG LEKQCVQELE KALREIQEEN SKIRLSSEAK
201: LVEANALVAS VNGRSSDVEN KIYSAESKLA EATRKSSELK LRLKEVETRE SVLQQERLSF TKERESYEGT FQKQREYLNE WEKKLQGKEE SITEQKRNLN
301: QREEKVNEIE KKLKLKEKEL EEWNRKVDLS MSKSKETEED ITKRLEELTT KEKEAHTLQI TLLAKENELR AFEEKLIARE GVILGYSFCR L
101: KISTLEKELY GYQHNMGLLL MENKELVSKH EQLNQAFQEA QEILKREQSS HLYALTTVEQ REENLRKALG LEKQCVQELE KALREIQEEN SKIRLSSEAK
201: LVEANALVAS VNGRSSDVEN KIYSAESKLA EATRKSSELK LRLKEVETRE SVLQQERLSF TKERESYEGT FQKQREYLNE WEKKLQGKEE SITEQKRNLN
301: QREEKVNEIE KKLKLKEKEL EEWNRKVDLS MSKSKETEED ITKRLEELTT KEKEAHTLQI TLLAKENELR AFEEKLIARE GVILGYSFCR L
Arabidopsis Description
LINC2nuclear matrix constituent protein-related [Source:TAIR;Acc:AT1G13220]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.