Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98000 | Canola | nucleus | 88.13 | 86.55 |
| AT1G13220.3 | Thale cress | nucleus | 73.21 | 73.53 |
| CDY67849 | Canola | cytosol, mitochondrion, nucleus, plastid | 11.78 | 43.97 |
| CDX96106 | Canola | cytosol | 28.62 | 42.16 |
| VIT_01s0011g02810.t01 | Wine grape | mitochondrion, plastid | 41.1 | 41.28 |
| Os02t0710102-01 | Rice | nucleus | 5.58 | 38.1 |
| CDY12630 | Canola | mitochondrion | 14.49 | 37.73 |
| CDX81542 | Canola | nucleus | 31.94 | 37.23 |
| KRH75531 | Soybean | nucleus | 31.33 | 37.09 |
| CDY45853 | Canola | cytosol | 30.89 | 37.03 |
| CDY12631 | Canola | golgi, mitochondrion, nucleus, plastid | 30.72 | 36.33 |
| CDY01790 | Canola | cytosol, mitochondrion, nucleus, plastid | 34.73 | 36.28 |
| KRH70636 | Soybean | nucleus | 37.35 | 35.37 |
| CDY46040 | Canola | cytosol | 31.85 | 33.52 |
| CDY67848 | Canola | nucleus | 20.77 | 30.83 |
| GSMUA_Achr8P14400_001 | Banana | cytosol | 31.68 | 30.17 |
| GSMUA_Achr9P21820_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 6.2 | 29.71 |
| GSMUA_Achr11P... | Banana | nucleus | 32.37 | 28.65 |
| Zm00001d051600_P004 | Maize | nucleus | 29.06 | 28.53 |
| KXG30901 | Sorghum | mitochondrion, nucleus | 28.62 | 28.37 |
| TraesCS6B01G303400.1 | Wheat | nucleus | 27.4 | 27.45 |
| TraesCS6D01G256200.1 | Wheat | nucleus | 27.31 | 27.26 |
| HORVU6Hr1G069560.1 | Barley | nucleus | 26.88 | 26.88 |
| GSMUA_Achr3P28980_001 | Banana | mitochondrion | 21.82 | 24.34 |
| CDY45628 | Canola | nucleus, plastid | 20.77 | 23.73 |
| GSMUA_Achr6P09340_001 | Banana | cytosol | 31.68 | 22.73 |
| CDY60978 | Canola | nucleus, plastid | 22.25 | 20.95 |
| CDY08750 | Canola | nucleus | 10.03 | 20.95 |
| GSMUA_Achr9P21830_001 | Banana | nucleus | 10.99 | 17.87 |
Protein Annotations
| EnsemblPlants:CDY19387 | EnsemblPlantsGene:GSBRNA2T00008929001 | ncoils:Coil | PANTHER:PTHR31908 | PANTHER:PTHR31908:SF5 | ProteinID:CDY19387 |
| ProteinID:CDY19387.1 | SEG:seg | SUPFAM:SSF57997 | UniParc:UPI0004EE9728 | UniProt:A0A078G2Y6 | MapMan:20.4.3.1 |
Description
BnaC05g08960DBnaC05g08960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2Y6]
Coordinates
chrLK032095:-:507187..511958
Molecular Weight (calculated)
132339.0 Da
IEP (calculated)
4.935
GRAVY (calculated)
-1.201
Length
1146 amino acids
Sequence
(BLAST)
(BLAST)
0001: MFTPQRKQWM SPAMTPRSET RVTSPRNADR KGKAIAFSED PVNSTLPPPP IGTLTGEGFS RGEADDMDMG DWRRFREVGL LDEASMERKD REALLEKIST
0101: LEKELYGYQH NMGLLLMENK EWASKHEQLN QALQEAQEIL KREQSSHLYA LTTVEQREEN LRKALGLEKQ CVEELEKALR EMQEETNKTR LASEAKLAEA
0201: NALVASVTGR SSDVESKIYS AESKLAEATR KSSELEMRLK EVETRERVLQ QERLSFAKER ESYEETFHKQ RDYLHEWEKK LQVKEESMPE QKRVLNQREE
0301: KVNEKEKNLK LKAKELEDWD RKIALSMSKC KETEEDLSKR LQELTAKEKE SCTLQSMLMA KERELRALEE KLIAREGTEI QKLIDDQKAE LADKMLAFEQ
0401: ECEERRKSLD KELQRKTEEV ERQRVEIDHG EEKLQKRNQA LNKKFGRVTE KEMDLEAKSK AIREKEKAIQ AEEKRLSLEK QQLLSDKESL MDLQQEIENI
0501: RSEMMKKEDA IREELKSLEI KKEEREEYQR LQSELKSQIE KSRLHEEFLS KEVENLKQEK ERFEKEWEIL DEKQAEYNKE RMRISEEKAK FERFQMLEGE
0601: RLKKEESALR VQIKQELDDI RLQRESFEAN MEHERSALHE KANLEHSKAL DDLETMRRNL EIEQQKRKEE DEKALQDRLS QFEDKRMKEL SDIKHRKQAL
0701: NREMEEMVSK RGALQKESEE IAKHKEKLKE QQAEMHNDIS ELSTLSINLK KRREEFARER GRFLAFVQKL KDCGSCGQLA NEFVLSDLQL PYNEEEAILP
0801: PNVVLSDLPE SSDASDSCNI KKSLDRDASG SGGSRRPNMS ILQKCTSILF SPSKRAEHDM DTGKPEQRPS SSLAVNKETK GEKPLPVSTI PDEDEEYTDS
0901: RVQETSECSQ FSELQSARRG RGRGRPRKPK PSTNPTNSAN HASPGDSSKG EASGHVSGTS EKTTGRGGRK RQHTEDTAAG DGRRKRQQTV AVLPQTPGQK
1001: RYNLRRNKTV DQVPADVKDN AAGGEDDADI AASAPSKDNV EGTSESVVEP LPARRLESSE VRAERVVTVE TTTATANTNV GVSVANTERT VNEDKNEEYE
1101: DGNDEEDYEE QEDDDDDDDD DDDDDDGSLR PGEGSIRKKL WTFLTT
0101: LEKELYGYQH NMGLLLMENK EWASKHEQLN QALQEAQEIL KREQSSHLYA LTTVEQREEN LRKALGLEKQ CVEELEKALR EMQEETNKTR LASEAKLAEA
0201: NALVASVTGR SSDVESKIYS AESKLAEATR KSSELEMRLK EVETRERVLQ QERLSFAKER ESYEETFHKQ RDYLHEWEKK LQVKEESMPE QKRVLNQREE
0301: KVNEKEKNLK LKAKELEDWD RKIALSMSKC KETEEDLSKR LQELTAKEKE SCTLQSMLMA KERELRALEE KLIAREGTEI QKLIDDQKAE LADKMLAFEQ
0401: ECEERRKSLD KELQRKTEEV ERQRVEIDHG EEKLQKRNQA LNKKFGRVTE KEMDLEAKSK AIREKEKAIQ AEEKRLSLEK QQLLSDKESL MDLQQEIENI
0501: RSEMMKKEDA IREELKSLEI KKEEREEYQR LQSELKSQIE KSRLHEEFLS KEVENLKQEK ERFEKEWEIL DEKQAEYNKE RMRISEEKAK FERFQMLEGE
0601: RLKKEESALR VQIKQELDDI RLQRESFEAN MEHERSALHE KANLEHSKAL DDLETMRRNL EIEQQKRKEE DEKALQDRLS QFEDKRMKEL SDIKHRKQAL
0701: NREMEEMVSK RGALQKESEE IAKHKEKLKE QQAEMHNDIS ELSTLSINLK KRREEFARER GRFLAFVQKL KDCGSCGQLA NEFVLSDLQL PYNEEEAILP
0801: PNVVLSDLPE SSDASDSCNI KKSLDRDASG SGGSRRPNMS ILQKCTSILF SPSKRAEHDM DTGKPEQRPS SSLAVNKETK GEKPLPVSTI PDEDEEYTDS
0901: RVQETSECSQ FSELQSARRG RGRGRPRKPK PSTNPTNSAN HASPGDSSKG EASGHVSGTS EKTTGRGGRK RQHTEDTAAG DGRRKRQQTV AVLPQTPGQK
1001: RYNLRRNKTV DQVPADVKDN AAGGEDDADI AASAPSKDNV EGTSESVVEP LPARRLESSE VRAERVVTVE TTTATANTNV GVSVANTERT VNEDKNEEYE
1101: DGNDEEDYEE QEDDDDDDDD DDDDDDGSLR PGEGSIRKKL WTFLTT
0001: MFTPQRKQWM SPAMTPRSET HKIGGVTNPR NADRKGKAVA FSDDLVIPTL PPPPIGTLTG QGVSRGHTDD MDMGDWRRFR EVGLLNEASM EKKDQEALLE
0101: KISTLEKELY GYQHNMGLLL MENKELVSKH EQLNQAFQEA QEILKREQSS HLYALTTVEQ REENLRKALG LEKQCVQELE KALREIQEEN SKIRLSSEAK
0201: LVEANALVAS VNGRSSDVEN KIYSAESKLA EATRKSSELK LRLKEVETRE SVLQQERLSF TKERESYEGT FQKQREYLNE WEKKLQGKEE SITEQKRNLN
0301: QREEKVNEIE KKLKLKEKEL EEWNRKVDLS MSKSKETEED ITKRLEELTT KEKEAHTLQI TLLAKENELR AFEEKLIARE GTEIQKLIDD QKEVLGSKML
0401: EFELECEEIR KSLDKELQRK IEELERQKVE IDHSEEKLEK RNQAMNKKFD RVNEKEMDLE AKLKTIKERE KIIQAEEKRL SLEKQQLLSD KESLEDLQQE
0501: IEKIRAEMTK KEEMIEEECK SLEIKKEERE EYLRLQSELK SQIEKSRVHE EFLSKEVENL KQEKERFEKE WEILDEKQAV YNKERIRISE EKEKFERFQL
0601: LEGERLKKEE SALRVQIMQE LDDIRLQRES FEANMEHERS ALQEKVKLEQ SKVIDDLEMM RRNLEIELQE RKEQDEKDLL DRMAQFEDKR MAELSDINHQ
0701: KQALNREMEE MMSKRSALQK ESEEIAKHKD KLKEQQVEMH NDISELSTLS INLKKRREVF GRERSRFLAF VQKLKDCGSC GQLVNDFVLS DLQLPSNDEV
0801: AILPPIGVLN DLPGSSNASD SCNIKKSLDG DASGSGGSRR PSMSILQKCT SIIFSPSKRV EHGIDTGKPE QRLSSSVAVG METKGEKPLP VDLRLRPSSS
0901: SIPEEDEEYT DSRVQETSEG SQLSEFQSSR RGRGRPRKAK PALNPTSSVK HASLEESSKD ELSGHVSVTS KKTTGGGGRK RQHIDDTATG GKRRRQQTVA
1001: VLPQTPGQRH YNLRRKKTVD QVPADVEDNA AAGEDDADIA ASAPSKDTVE ETVVETLRAR RIETNADVVS AENNGDVPVA NVEPTVNEDT NEDGDEEEDE
1101: AQDDDNEENQ DDDDDDDGDD DGSPRPGEGS IRKKLWTFLT T
0101: KISTLEKELY GYQHNMGLLL MENKELVSKH EQLNQAFQEA QEILKREQSS HLYALTTVEQ REENLRKALG LEKQCVQELE KALREIQEEN SKIRLSSEAK
0201: LVEANALVAS VNGRSSDVEN KIYSAESKLA EATRKSSELK LRLKEVETRE SVLQQERLSF TKERESYEGT FQKQREYLNE WEKKLQGKEE SITEQKRNLN
0301: QREEKVNEIE KKLKLKEKEL EEWNRKVDLS MSKSKETEED ITKRLEELTT KEKEAHTLQI TLLAKENELR AFEEKLIARE GTEIQKLIDD QKEVLGSKML
0401: EFELECEEIR KSLDKELQRK IEELERQKVE IDHSEEKLEK RNQAMNKKFD RVNEKEMDLE AKLKTIKERE KIIQAEEKRL SLEKQQLLSD KESLEDLQQE
0501: IEKIRAEMTK KEEMIEEECK SLEIKKEERE EYLRLQSELK SQIEKSRVHE EFLSKEVENL KQEKERFEKE WEILDEKQAV YNKERIRISE EKEKFERFQL
0601: LEGERLKKEE SALRVQIMQE LDDIRLQRES FEANMEHERS ALQEKVKLEQ SKVIDDLEMM RRNLEIELQE RKEQDEKDLL DRMAQFEDKR MAELSDINHQ
0701: KQALNREMEE MMSKRSALQK ESEEIAKHKD KLKEQQVEMH NDISELSTLS INLKKRREVF GRERSRFLAF VQKLKDCGSC GQLVNDFVLS DLQLPSNDEV
0801: AILPPIGVLN DLPGSSNASD SCNIKKSLDG DASGSGGSRR PSMSILQKCT SIIFSPSKRV EHGIDTGKPE QRLSSSVAVG METKGEKPLP VDLRLRPSSS
0901: SIPEEDEEYT DSRVQETSEG SQLSEFQSSR RGRGRPRKAK PALNPTSSVK HASLEESSKD ELSGHVSVTS KKTTGGGGRK RQHIDDTATG GKRRRQQTVA
1001: VLPQTPGQRH YNLRRKKTVD QVPADVEDNA AAGEDDADIA ASAPSKDTVE ETVVETLRAR RIETNADVVS AENNGDVPVA NVEPTVNEDT NEDGDEEEDE
1101: AQDDDNEENQ DDDDDDDGDD DGSPRPGEGS IRKKLWTFLT T
Arabidopsis Description
LINC2nuclear matrix constituent protein-related [Source:TAIR;Acc:AT1G13220]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.