Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 5
- plastid 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67849 | Canola | cytosol, mitochondrion, nucleus, plastid | 53.18 | 76.22 |
| Os02t0710102-01 | Rice | nucleus | 16.14 | 42.26 |
| CDY12631 | Canola | golgi, mitochondrion, nucleus, plastid | 73.41 | 33.33 |
| CDX96106 | Canola | cytosol | 55.23 | 31.23 |
| CDY46040 | Canola | cytosol | 69.55 | 28.1 |
| GSMUA_Achr9P21820_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 15.0 | 27.62 |
| Bra034012.1-P | Field mustard | cytosol | 69.09 | 27.26 |
| CDY01790 | Canola | cytosol, mitochondrion, nucleus, plastid | 60.45 | 24.25 |
| AT1G67230.1 | Thale cress | nucleus | 59.55 | 23.14 |
| Solyc02g089800.2.1 | Tomato | nucleus | 42.05 | 17.04 |
| PGSC0003DMT400026042 | Potato | cytosol, mitochondrion, nucleus, plastid | 43.41 | 16.8 |
| VIT_14s0006g03280.t01 | Wine grape | nucleus | 47.05 | 16.44 |
| KRH01492 | Soybean | nucleus | 44.32 | 16.37 |
| KRH45183 | Soybean | nucleus | 43.86 | 16.2 |
| CDX81542 | Canola | nucleus | 35.0 | 15.67 |
| CDY45853 | Canola | cytosol | 33.86 | 15.59 |
| Solyc03g045050.2.1 | Tomato | nucleus | 40.45 | 15.25 |
| PGSC0003DMT400008676 | Potato | cytosol | 37.27 | 14.99 |
| CDY19387 | Canola | nucleus | 37.73 | 14.49 |
| CDX98000 | Canola | nucleus | 37.27 | 14.05 |
| HORVU6Hr1G069560.1 | Barley | nucleus | 35.91 | 13.79 |
| TraesCS6D01G256200.1 | Wheat | nucleus | 35.45 | 13.59 |
| TraesCS6B01G303400.1 | Wheat | nucleus | 35.23 | 13.55 |
| KXG30901 | Sorghum | mitochondrion, nucleus | 35.0 | 13.32 |
| Zm00001d051600_P004 | Maize | nucleus | 35.23 | 13.28 |
| GSMUA_Achr8P14400_001 | Banana | cytosol | 35.68 | 13.05 |
| GSMUA_Achr3P28980_001 | Banana | mitochondrion | 29.09 | 12.46 |
| GSMUA_Achr11P... | Banana | nucleus | 36.36 | 12.36 |
| CDY45628 | Canola | nucleus, plastid | 25.91 | 11.37 |
| CDY60978 | Canola | nucleus, plastid | 25.68 | 9.29 |
| GSMUA_Achr6P09340_001 | Banana | cytosol | 33.64 | 9.27 |
| GSMUA_Achr9P21830_001 | Banana | nucleus | 7.27 | 4.54 |
| CDY67848 | Canola | nucleus | 6.36 | 3.63 |
| CDY08750 | Canola | nucleus | 3.64 | 2.91 |
Protein Annotations
| EnsemblPlants:CDY12630 | EnsemblPlantsGene:GSBRNA2T00070136001 | GO:A0A078FE35 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ncoils:Coil | PANTHER:PTHR31908 | PANTHER:PTHR31908:SF3 | ProteinID:CDY12630 | ProteinID:CDY12630.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EF1B58 | UniProt:A0A078FE35 | MapMan:20.4.3.1 | : | : |
Description
BnaA02g12980DBnaA02g12980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FE35]
Coordinates
chrLK032025:-:342161..344972
Molecular Weight (calculated)
49802.3 Da
IEP (calculated)
4.858
GRAVY (calculated)
-0.849
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTPLKVWQ RRSTTPAKGP DMVTPVTGRV SEIQHEDDPR RLLSELQKEL FEYQHSMGLL LLEKKEWGSR YEELQLEFED ANECLRRERN AHLAAMADVE
101: KREEGLKKAL GVEKQCALDL EKGLRELRSE NAEISFTADS KLTEADALVR SVEEKSLEVE AKLRAVDARL AEVSRKSSEV ERKSKEVEAR ESSLQRERFA
201: YIAEREADEA TLSKQREDLR EWERKLQEGE ERVAKSQMIV KQREDRANES DKIVKQKGKE LEEAQKKIDA DNLALKKKED DITSRIKVLT LKEQVSSSLF
301: TFTILFLFKV LGILYNLRRS TRVAGKNSLG KKNEETTGGV QQDDGIYCTQ TTTASVGVAL SDNGVSTNVV EREAMADFED TDAGSPKRIG ESGAMSEEDV
401: NKTPQRADSG NEYDGEEDES ESEHPGKVSI SKKLWTFLTT
101: KREEGLKKAL GVEKQCALDL EKGLRELRSE NAEISFTADS KLTEADALVR SVEEKSLEVE AKLRAVDARL AEVSRKSSEV ERKSKEVEAR ESSLQRERFA
201: YIAEREADEA TLSKQREDLR EWERKLQEGE ERVAKSQMIV KQREDRANES DKIVKQKGKE LEEAQKKIDA DNLALKKKED DITSRIKVLT LKEQVSSSLF
301: TFTILFLFKV LGILYNLRRS TRVAGKNSLG KKNEETTGGV QQDDGIYCTQ TTTASVGVAL SDNGVSTNVV EREAMADFED TDAGSPKRIG ESGAMSEEDV
401: NKTPQRADSG NEYDGEEDES ESEHPGKVSI SKKLWTFLTT
001: MFTPQRKQWM SPAMTPRSET HKIGGVTNPR NADRKGKAVA FSDDLVIPTL PPPPIGTLTG QGVSRGHTDD MDMGDWRRFR EVGLLNEASM EKKDQEALLE
101: KISTLEKELY GYQHNMGLLL MENKELVSKH EQLNQAFQEA QEILKREQSS HLYALTTVEQ REENLRKALG LEKQCVQELE KALREIQEEN SKIRLSSEAK
201: LVEANALVAS VNGRSSDVEN KIYSAESKLA EATRKSSELK LRLKEVETRE SVLQQERLSF TKERESYEGT FQKQREYLNE WEKKLQGKEE SITEQKRNLN
301: QREEKVNEIE KKLKLKEKEL EEWNRKVDLS MSKSKETEED ITKRLEELTT KEKEAHTLQI TLLAKENELR AFEEKLIARE GVILGYSFCR L
101: KISTLEKELY GYQHNMGLLL MENKELVSKH EQLNQAFQEA QEILKREQSS HLYALTTVEQ REENLRKALG LEKQCVQELE KALREIQEEN SKIRLSSEAK
201: LVEANALVAS VNGRSSDVEN KIYSAESKLA EATRKSSELK LRLKEVETRE SVLQQERLSF TKERESYEGT FQKQREYLNE WEKKLQGKEE SITEQKRNLN
301: QREEKVNEIE KKLKLKEKEL EEWNRKVDLS MSKSKETEED ITKRLEELTT KEKEAHTLQI TLLAKENELR AFEEKLIARE GVILGYSFCR L
Arabidopsis Description
LINC2nuclear matrix constituent protein-related [Source:TAIR;Acc:AT1G13220]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.