Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g045050.2.1 | Tomato | nucleus | 90.95 | 85.26 |
| PGSC0003DMT400026042 | Potato | cytosol, mitochondrion, nucleus, plastid | 60.6 | 58.31 |
| CDX96106 | Canola | cytosol | 33.73 | 47.43 |
| CDY67849 | Canola | cytosol, mitochondrion, nucleus, plastid | 13.25 | 47.23 |
| VIT_14s0006g03280.t01 | Wine grape | nucleus | 48.81 | 42.41 |
| Bra004210.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 40.4 | 41.42 |
| CDY01790 | Canola | cytosol, mitochondrion, nucleus, plastid | 41.5 | 41.39 |
| Os02t0710102-01 | Rice | nucleus | 6.31 | 41.07 |
| CDY12631 | Canola | golgi, mitochondrion, nucleus, plastid | 36.2 | 40.87 |
| KRH01492 | Soybean | nucleus | 44.24 | 40.64 |
| KRH45183 | Soybean | nucleus | 44.06 | 40.47 |
| AT1G67230.1 | Thale cress | nucleus | 41.68 | 40.28 |
| Bra034012.1-P | Field mustard | cytosol | 41.04 | 40.27 |
| CDY46040 | Canola | cytosol | 38.94 | 39.12 |
| CDY67848 | Canola | nucleus | 26.6 | 37.69 |
| CDY12630 | Canola | mitochondrion | 14.99 | 37.27 |
| GSMUA_Achr9P21820_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 6.95 | 31.8 |
| GSMUA_Achr8P14400_001 | Banana | cytosol | 34.0 | 30.92 |
| TraesCS6D01G256200.1 | Wheat | nucleus | 31.54 | 30.05 |
| TraesCS6B01G303400.1 | Wheat | nucleus | 31.17 | 29.81 |
| KXG30901 | Sorghum | mitochondrion, nucleus | 30.99 | 29.33 |
| HORVU6Hr1G069560.1 | Barley | nucleus | 30.53 | 29.14 |
| GSMUA_Achr11P... | Banana | nucleus | 34.37 | 29.03 |
| Zm00001d051600_P004 | Maize | nucleus | 30.9 | 28.96 |
| PGSC0003DMT400055146 | Potato | plastid | 22.3 | 26.04 |
| GSMUA_Achr3P28980_001 | Banana | mitochondrion | 21.85 | 23.27 |
| GSMUA_Achr6P09340_001 | Banana | cytosol | 33.73 | 23.11 |
| GSMUA_Achr9P21830_001 | Banana | nucleus | 13.07 | 20.28 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400008676 | EnsemblPlantsGene:PGSC0003DMG400003363 | EntrezGene:102581630 | ncoils:Coil | PANTHER:PTHR31908 | PANTHER:PTHR31908:SF3 |
| PGSC:PGSC0003DMG400003363 | RefSeq:XP_006346853.1 | SEG:seg | UniParc:UPI0002959F54 | UniProt:M0ZUX5 | MapMan:20.4.3.1 |
Description
DNA double-strand break repair rad50 ATPase [Source:PGSC_GENE;Acc:PGSC0003DMG400003363]
Coordinates
chr3:+:10242614..10249175
Molecular Weight (calculated)
125869.0 Da
IEP (calculated)
4.939
GRAVY (calculated)
-1.126
Length
1094 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGLLLIEKKE WSAKLEEIKQ ALNEANEAYR REHTAHLIAL SEVEKREENL RKALGVENQC VRELEKELRE MRSQYAETKY VADSKLDEAK ALATSVEENS
0101: LHVELKLRAA DAKTAEVSRK SSDIERKLRD IEAQENALRR ERSSFNTERE AHESALSKHR EELREWERKL KEGEERLADA RTLLNQREQR ANENDSILRQ
0201: KQSDLEDEQR KIDTANSVLR KKEVDMSSRL ANLASTEKEL EDVRKSLEIK KEELDELQEK LNAKEREEIQ KLMDEHIAIL KSKEEEFELE MRQRHASLDE
0301: ELKNKVIELE KKEAEVSHVE EKLKKREQAL EKKSDKMKEK EKDLELKLKA LKEREKSLKI DEKELETEKK QIFTEKDRLL ALRVELENRR AELEKQQLKI
0401: NEGIEQLKIT EDEKMEHARL QSELKQEIDK CRDLRDTLLK EAEDLKQEKE RFEREWEELD EKRSAIKKEL QEVNDSKKKF EKLQHTEEER LKKEKLETEN
0501: YVQRELEALK AAQETFAATM DHERSVLSEK TQSEKIRMLH DFENQKRDLE SEMQRKREEM EFALHEQKKR FEEERQRELS NANYLREVAH KEMEVMKSER
0601: VKLEKEKQEI SSNKMHLAEQ QSEMKKDIDV LDGLSRKLKD QREAFAKERE RFLTFVKKQE NCSSCGEGIR IFELSELQTL NDVVDFEAPS LRNVAQEYLT
0701: DGFQDTPGRA NNELSPGALN SGSMASAGTM SWLRKCTTKL LKFSPGNKIE HPASQDFIGG SSLEEKFVGE LPDTMSKKDQ VDLAVSINGT FDDQKLQTDN
0801: SVRVVEVGQD VPEDSQHSNI NSQRRPVRKG RGKNSKTGHP NSKATSAKII LGENLKESEN THVNGGLETS INVNESQKEE SSLFGEARSK TRKRTRIHGT
0901: ASEFDGSHSD GQSDSVTATS RRKRRQKAAP SVQAPGEKRY NLRRPRSAAI ATANGSLPEL VSKSQEENGD SKAVPETPAA ISDGELRNSD AALPAVADSP
1001: LMEAADDQGC TADIANELVD DTGLSEEMNG TPEGPSAYNV YDEEHEGDTI VQEDGERDED ADENDEVDKG NEEEEVLHPG EVSIGKKIWS FITT
0101: LHVELKLRAA DAKTAEVSRK SSDIERKLRD IEAQENALRR ERSSFNTERE AHESALSKHR EELREWERKL KEGEERLADA RTLLNQREQR ANENDSILRQ
0201: KQSDLEDEQR KIDTANSVLR KKEVDMSSRL ANLASTEKEL EDVRKSLEIK KEELDELQEK LNAKEREEIQ KLMDEHIAIL KSKEEEFELE MRQRHASLDE
0301: ELKNKVIELE KKEAEVSHVE EKLKKREQAL EKKSDKMKEK EKDLELKLKA LKEREKSLKI DEKELETEKK QIFTEKDRLL ALRVELENRR AELEKQQLKI
0401: NEGIEQLKIT EDEKMEHARL QSELKQEIDK CRDLRDTLLK EAEDLKQEKE RFEREWEELD EKRSAIKKEL QEVNDSKKKF EKLQHTEEER LKKEKLETEN
0501: YVQRELEALK AAQETFAATM DHERSVLSEK TQSEKIRMLH DFENQKRDLE SEMQRKREEM EFALHEQKKR FEEERQRELS NANYLREVAH KEMEVMKSER
0601: VKLEKEKQEI SSNKMHLAEQ QSEMKKDIDV LDGLSRKLKD QREAFAKERE RFLTFVKKQE NCSSCGEGIR IFELSELQTL NDVVDFEAPS LRNVAQEYLT
0701: DGFQDTPGRA NNELSPGALN SGSMASAGTM SWLRKCTTKL LKFSPGNKIE HPASQDFIGG SSLEEKFVGE LPDTMSKKDQ VDLAVSINGT FDDQKLQTDN
0801: SVRVVEVGQD VPEDSQHSNI NSQRRPVRKG RGKNSKTGHP NSKATSAKII LGENLKESEN THVNGGLETS INVNESQKEE SSLFGEARSK TRKRTRIHGT
0901: ASEFDGSHSD GQSDSVTATS RRKRRQKAAP SVQAPGEKRY NLRRPRSAAI ATANGSLPEL VSKSQEENGD SKAVPETPAA ISDGELRNSD AALPAVADSP
1001: LMEAADDQGC TADIANELVD DTGLSEEMNG TPEGPSAYNV YDEEHEGDTI VQEDGERDED ADENDEVDKG NEEEEVLHPG EVSIGKKIWS FITT
0001: MSTPLKVWQR WSTPTKATNP DSNGSSHGTG LDMVTPVSGR VSEIQFDDPR ILPEKISELE KELFEYQHSM GLLLIEKKEW SSQYEALQQA FEEVNECLKQ
0101: ERNAHLIAIA DVEKREEGLR KALGIEKQCA LDLEKALKEL RAENAEIKFT ADSKLTEANA LVRSVEEKSL EVEAKLRAVD AKLAEVSRKS SDVERKAKEV
0201: EARESSLQRE RFSYIAEREA DEATLSKQRE DLREWERKLQ EGEERVAKSQ MIVKQREDRA NESDKIIKQK GKELEEAQKK IDAANLAVKK LEDDVSSRIK
0301: DLALREQETD VLKKSIETKA RELQALQEKL EAREKMAVQQ LVDEHQAKLD STQREFELEM EQKRKSIDDS LKSKVAEVEK REAEWKHMEE KVAKREQALD
0401: RKLEKHKEKE NDFDLRLKGI SGREKALKSE EKALETEKKK LLEDKEIILN LKALVEKVSG ENQAQLSEIN KEKDELRVTE EERSEYLRLQ TELKEQIEKC
0501: RSQQELLQKE AEDLKAQRES FEKEWEELDE RKAKIGNELK NITDQKEKLE RHIHLEEERL KKEKQAANEN MERELETLEV AKASFAETME YERSMLSKKA
0601: ESERSQLLHD IEMRKRKLES DMQTILEEKE RELQAKKKLF EEEREKELSN INYLRDVARR EMMDMQNERQ RIEKEKLEVD SSKNHLEEQQ TEIRKDVDDL
0701: VALTKKLKEQ REQFISERSR FLSSMESNRN CSRCGELLSE LVLPEIDNLE MPNMSKLANI LDNEAPRQEM RDISPTAAGL GLPVTGGKVS WFRKCTSKML
0801: KLSPIKMTEP SVTWNLADQE PQSTEQANVG GPSTTVQAAT TYSFDVQKAE SETGTKEVEV TNVNSDGDQS DINSKAQEVA ADSLSNLDVD GQSRMKGKGK
0901: ARTRRTRSVK DVVDDAKALY GESINLYEPN DSTENVDDST KASTGETGRS DKAISKNGRK RGRVGSLRTC TTEQDGNESD GKSDSVTGGA HQRKRRQKVA
1001: SEQQGEVVGQ RYNLRRPRRV TGEPALSKKN EDIGGVQQEE GIHCTQATAT ASVGVAVSDN GVSTNVVQHE ATADSEDTDA GSPKRTDESE AMSEDVNKTP
1101: LRADSDGEDD ESDAEHPGKV SIGKKLWTFL TT
0101: ERNAHLIAIA DVEKREEGLR KALGIEKQCA LDLEKALKEL RAENAEIKFT ADSKLTEANA LVRSVEEKSL EVEAKLRAVD AKLAEVSRKS SDVERKAKEV
0201: EARESSLQRE RFSYIAEREA DEATLSKQRE DLREWERKLQ EGEERVAKSQ MIVKQREDRA NESDKIIKQK GKELEEAQKK IDAANLAVKK LEDDVSSRIK
0301: DLALREQETD VLKKSIETKA RELQALQEKL EAREKMAVQQ LVDEHQAKLD STQREFELEM EQKRKSIDDS LKSKVAEVEK REAEWKHMEE KVAKREQALD
0401: RKLEKHKEKE NDFDLRLKGI SGREKALKSE EKALETEKKK LLEDKEIILN LKALVEKVSG ENQAQLSEIN KEKDELRVTE EERSEYLRLQ TELKEQIEKC
0501: RSQQELLQKE AEDLKAQRES FEKEWEELDE RKAKIGNELK NITDQKEKLE RHIHLEEERL KKEKQAANEN MERELETLEV AKASFAETME YERSMLSKKA
0601: ESERSQLLHD IEMRKRKLES DMQTILEEKE RELQAKKKLF EEEREKELSN INYLRDVARR EMMDMQNERQ RIEKEKLEVD SSKNHLEEQQ TEIRKDVDDL
0701: VALTKKLKEQ REQFISERSR FLSSMESNRN CSRCGELLSE LVLPEIDNLE MPNMSKLANI LDNEAPRQEM RDISPTAAGL GLPVTGGKVS WFRKCTSKML
0801: KLSPIKMTEP SVTWNLADQE PQSTEQANVG GPSTTVQAAT TYSFDVQKAE SETGTKEVEV TNVNSDGDQS DINSKAQEVA ADSLSNLDVD GQSRMKGKGK
0901: ARTRRTRSVK DVVDDAKALY GESINLYEPN DSTENVDDST KASTGETGRS DKAISKNGRK RGRVGSLRTC TTEQDGNESD GKSDSVTGGA HQRKRRQKVA
1001: SEQQGEVVGQ RYNLRRPRRV TGEPALSKKN EDIGGVQQEE GIHCTQATAT ASVGVAVSDN GVSTNVVQHE ATADSEDTDA GSPKRTDESE AMSEDVNKTP
1101: LRADSDGEDD ESDAEHPGKV SIGKKLWTFL TT
Arabidopsis Description
CRWN1Protein CROWDED NUCLEI 1 [Source:UniProtKB/Swiss-Prot;Acc:F4HRT5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.