Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g091960.2.1 | Tomato | nucleus | 37.46 | 72.22 |
| KRH28315 | Soybean | cytosol | 35.22 | 44.84 |
| VIT_00s0558g00020.t01 | Wine grape | plastid | 52.93 | 44.4 |
| Bra037827.1-P | Field mustard | nucleus, plastid | 45.04 | 41.7 |
| CDY45628 | Canola | nucleus, plastid | 44.61 | 41.67 |
| AT5G65780.2 | Thale cress | plastid | 45.25 | 41.65 |
| KRH77170 | Soybean | cytosol | 32.87 | 41.29 |
| AT5G65770.2 | Thale cress | plastid | 45.57 | 40.98 |
| KRH04371 | Soybean | cytosol | 45.46 | 40.57 |
| KRH58169 | Soybean | nucleus | 45.14 | 40.36 |
| TraesCS3D01G302500.2 | Wheat | cytosol | 36.71 | 34.43 |
| TraesCS3B01G337300.1 | Wheat | cytosol | 36.71 | 34.37 |
| HORVU3Hr1G074480.3 | Barley | plasma membrane | 36.39 | 34.31 |
| TraesCS3A01G299200.1 | Wheat | cytosol | 36.93 | 34.26 |
| CDY60978 | Canola | nucleus, plastid | 44.4 | 34.18 |
| Zm00001d043335_P006 | Maize | extracellular, mitochondrion | 35.33 | 34.02 |
| KXG33452 | Sorghum | cytosol | 36.18 | 33.97 |
| GSMUA_Achr6P31730_001 | Banana | cytosol | 41.2 | 33.77 |
| CDY08750 | Canola | nucleus | 19.53 | 33.33 |
| PGSC0003DMT400026042 | Potato | cytosol, mitochondrion, nucleus, plastid | 28.07 | 23.13 |
| PGSC0003DMT400008676 | Potato | cytosol | 26.04 | 22.3 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400055146 | EnsemblPlantsGene:PGSC0003DMG400021400 | EntrezGene:102582491 | ncoils:Coil | PANTHER:PTHR31908 | PANTHER:PTHR31908:SF2 |
| PGSC:PGSC0003DMG400021400 | RefSeq:XP_006363793.1 | SEG:seg | UniParc:UPI000294B0A0 | UniProt:M1BXE8 | MapMan:20.4.3.1 |
Description
Nuclear matrix constituent protein 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400021400]
Coordinates
chr2:+:42366746..42372993
Molecular Weight (calculated)
108823.0 Da
IEP (calculated)
5.242
GRAVY (calculated)
-0.986
Length
937 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPGSGRLA LTPVNPTPIS GLGRVSKTPL TDEVIWKRLR EAGFDEDSIK RRDKAALIAY IAKLETELYD HQYQMGLLIL ERKEWVSKNE QFKAASVSAE
101: LLYKREQAAR LSDMAEAKKL EANLKKALGI EKECVANIEK ALHEMRAECA EAKVASENKL TEAQSMMEDA QKKYADVEEK LRKAESLEAE ASLFHRTAER
201: KLREVESRED DLRRQTLLFK SDCEAKEKEI QLERQSLSER LKTLQRSQEE LLDAQALLNK REEFIFSRSQ ELNRHEKDLE DEKSNLENDI KSLNEKKRNL
301: EVKLKSLSAR EEGIIKREHK LNEKEEELLL LQGKMQSKEI DDSKQVMVNQ EATLVTKISS IEAELETKRK LVEDEIQTKR RAWELKDMDI KSREDLITDK
401: EYDLERQSRT LAEKEKELED KVHVIEEKER NLQAAEKEVE LQRTVLQQER EGISKMRNDL EKSLKMLDEK RKCVDHEEEK VEAMKNETQE LLILETRLKL
501: EIDMIRAEKE EIEMEADRLK AEKAKFETEW EVIDEKREEL QKEAERVAEE KLAISKLLKD SRDSLKAEKN AIQEEYKQNL ESLSRDRETF MYEIESERAE
601: WFNKIQKERE NFLLDVEMQK KELENRIEKR REEIETDLKE KEKAFEELKK RELQDIASLR ETVEKELEHV GLELNKLDAE RKEINLDRER RDKEWAELNN
701: AIEELKVQRL KLEKQRELLH ADRKEILAQI EQLKKLEDVK IIPDRIATPK KLHSGLPSNE LKPSAKRLLK HASVLGSGLD GNGNNGVRQD TPSIMKENGN
801: SSSTLSTPFS WLKRCADTLL DRTPSNKRRR EDGHFISQLT EYGASGTLSS SPDAPDVEHL EVLPNHTPIA AEETTVYIDK IVTVHEVTEI DVRKVTEGSL
901: ETLSGESGRK VGNNGSLQSD KNGKPEGRSR RTKATRK
101: LLYKREQAAR LSDMAEAKKL EANLKKALGI EKECVANIEK ALHEMRAECA EAKVASENKL TEAQSMMEDA QKKYADVEEK LRKAESLEAE ASLFHRTAER
201: KLREVESRED DLRRQTLLFK SDCEAKEKEI QLERQSLSER LKTLQRSQEE LLDAQALLNK REEFIFSRSQ ELNRHEKDLE DEKSNLENDI KSLNEKKRNL
301: EVKLKSLSAR EEGIIKREHK LNEKEEELLL LQGKMQSKEI DDSKQVMVNQ EATLVTKISS IEAELETKRK LVEDEIQTKR RAWELKDMDI KSREDLITDK
401: EYDLERQSRT LAEKEKELED KVHVIEEKER NLQAAEKEVE LQRTVLQQER EGISKMRNDL EKSLKMLDEK RKCVDHEEEK VEAMKNETQE LLILETRLKL
501: EIDMIRAEKE EIEMEADRLK AEKAKFETEW EVIDEKREEL QKEAERVAEE KLAISKLLKD SRDSLKAEKN AIQEEYKQNL ESLSRDRETF MYEIESERAE
601: WFNKIQKERE NFLLDVEMQK KELENRIEKR REEIETDLKE KEKAFEELKK RELQDIASLR ETVEKELEHV GLELNKLDAE RKEINLDRER RDKEWAELNN
701: AIEELKVQRL KLEKQRELLH ADRKEILAQI EQLKKLEDVK IIPDRIATPK KLHSGLPSNE LKPSAKRLLK HASVLGSGLD GNGNNGVRQD TPSIMKENGN
801: SSSTLSTPFS WLKRCADTLL DRTPSNKRRR EDGHFISQLT EYGASGTLSS SPDAPDVEHL EVLPNHTPIA AEETTVYIDK IVTVHEVTEI DVRKVTEGSL
901: ETLSGESGRK VGNNGSLQSD KNGKPEGRSR RTKATRK
0001: MATSSRSERF PITPSTAATN RLTITPNSRV LKSPLTEEIM WKRLKDAGFD EQSIKNRDKA ALIAYIAKLE SEVYDYQHNM GLLLLEKNEL SSQYEEIKAS
0101: VDESDLTHMR EKSAYVSALA EAKKREESLK KDVGIAKECI SSLEKTLHEM RAECAETKVS AGSTMSEAHV MIEDALKKLA DAEAKMRAAE ALQAEANRYH
0201: RIAERKLKEV ESREDDLTRR LASFKSECET KENEMVIERQ TLNERRKSLQ QEHERLLDAQ VSLNQREDHI FARSQELAEL EKGLDTAKTT FEEERKAFED
0301: KKSNLEIALA LCAKREEAVS ERESSLLKKE QELLVAEEKI ASKESELIQN VLANQEVILR KRKSDVEAEL ECKSKSVEVE IESKRRAWEL REVDIKQRED
0401: LVGEKEHDLE VQSRALAEKE KDITEKSFNL DEKEKNLVAT EEDINRKTTM LEDEKERLRK LDLELQQSLT SLEDKRKRVD SATQKLEALK SETSELSTLE
0501: MKLKEELDDL RAQKLEMLAE ADRLKVEKAK FEAEWEHIDV KREELRKEAE YITRQREAFS MYLKDERDNI KEERDALRNQ HKNDVESLNR EREEFMNKMV
0601: EEHSEWLSKI QRERADFLLG IEMQKRELEY CIENKREELE NSSRDREKAF EQEKKLEEER IQSLKEMAEK ELEHVQVELK RLDAERLEIK LDRERREREW
0701: AELKDSVEEL KVQREKLETQ RHMLRAERDE IRHEIEELKK LENLKVALDD MSMAKMQLSN LERSWEKVSA LKQKVVSRDD ELDLQNGVST VSNSEDGYNS
0801: SMERQNGLTP SSATPFSWIK RCTNLIFKTS PEKSTLMHHY EEEGGVPSEK LKLESSRREE KAYTEGLSIA VERLEAGRKR RGNTSGDETS EPSNNKKRKH
0901: DVTQKYSDEA DTQSVISSPQ NVPEDKHELP SSQTQTPSGM VVISETVKIT RVTCETEVTN KVTTLDCSES PSEAGRKMGE ETEDGDCNQT GINASETVIH
1001: NEAATEDICT
0101: VDESDLTHMR EKSAYVSALA EAKKREESLK KDVGIAKECI SSLEKTLHEM RAECAETKVS AGSTMSEAHV MIEDALKKLA DAEAKMRAAE ALQAEANRYH
0201: RIAERKLKEV ESREDDLTRR LASFKSECET KENEMVIERQ TLNERRKSLQ QEHERLLDAQ VSLNQREDHI FARSQELAEL EKGLDTAKTT FEEERKAFED
0301: KKSNLEIALA LCAKREEAVS ERESSLLKKE QELLVAEEKI ASKESELIQN VLANQEVILR KRKSDVEAEL ECKSKSVEVE IESKRRAWEL REVDIKQRED
0401: LVGEKEHDLE VQSRALAEKE KDITEKSFNL DEKEKNLVAT EEDINRKTTM LEDEKERLRK LDLELQQSLT SLEDKRKRVD SATQKLEALK SETSELSTLE
0501: MKLKEELDDL RAQKLEMLAE ADRLKVEKAK FEAEWEHIDV KREELRKEAE YITRQREAFS MYLKDERDNI KEERDALRNQ HKNDVESLNR EREEFMNKMV
0601: EEHSEWLSKI QRERADFLLG IEMQKRELEY CIENKREELE NSSRDREKAF EQEKKLEEER IQSLKEMAEK ELEHVQVELK RLDAERLEIK LDRERREREW
0701: AELKDSVEEL KVQREKLETQ RHMLRAERDE IRHEIEELKK LENLKVALDD MSMAKMQLSN LERSWEKVSA LKQKVVSRDD ELDLQNGVST VSNSEDGYNS
0801: SMERQNGLTP SSATPFSWIK RCTNLIFKTS PEKSTLMHHY EEEGGVPSEK LKLESSRREE KAYTEGLSIA VERLEAGRKR RGNTSGDETS EPSNNKKRKH
0901: DVTQKYSDEA DTQSVISSPQ NVPEDKHELP SSQTQTPSGM VVISETVKIT RVTCETEVTN KVTTLDCSES PSEAGRKMGE ETEDGDCNQT GINASETVIH
1001: NEAATEDICT
Arabidopsis Description
LINC4little nuclei4 [Source:TAIR;Acc:AT5G65770]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.