Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G65780.2 | Thale cress | plastid | 94.15 | 96.37 |
| Bra037827.1-P | Field mustard | nucleus, plastid | 75.91 | 78.16 |
| CDY45628 | Canola | nucleus, plastid | 74.28 | 77.17 |
| CDY08750 | Canola | nucleus | 34.74 | 65.94 |
| CDY60978 | Canola | nucleus, plastid | 69.39 | 59.41 |
| KRH28315 | Soybean | cytosol | 33.69 | 47.69 |
| PGSC0003DMT400055146 | Potato | plastid | 40.98 | 45.57 |
| VIT_00s0558g00020.t01 | Wine grape | plastid | 47.7 | 44.49 |
| KRH04371 | Soybean | cytosol | 44.24 | 43.9 |
| KRH58169 | Soybean | nucleus | 43.95 | 43.7 |
| KRH77170 | Soybean | cytosol | 30.33 | 42.36 |
| Solyc02g091960.2.1 | Tomato | nucleus | 19.48 | 41.77 |
| TraesCS3D01G302500.2 | Wheat | cytosol | 33.59 | 35.03 |
| HORVU3Hr1G074480.3 | Barley | plasma membrane | 33.11 | 34.71 |
| TraesCS3B01G337300.1 | Wheat | cytosol | 33.3 | 34.67 |
| TraesCS3A01G299200.1 | Wheat | cytosol | 33.59 | 34.65 |
| Zm00001d043335_P006 | Maize | extracellular, mitochondrion | 32.15 | 34.43 |
| KXG33452 | Sorghum | cytosol | 32.34 | 33.77 |
| GSMUA_Achr6P31730_001 | Banana | cytosol | 36.66 | 33.42 |
| AT1G68790.1 | Thale cress | nucleus | 22.36 | 21.47 |
| AT1G67230.1 | Thale cress | nucleus | 23.03 | 21.2 |
| AT1G13220.3 | Thale cress | nucleus | 22.65 | 20.68 |
Protein Annotations
| MapMan:20.4.3.1 | EntrezGene:836706 | ProteinID:AED98104.1 | ArrayExpress:AT5G65770 | EnsemblPlantsGene:AT5G65770 | RefSeq:AT5G65770 |
| TAIR:AT5G65770 | RefSeq:AT5G65770-TAIR-G | EnsemblPlants:AT5G65770.2 | TAIR:AT5G65770.2 | ProteinID:BAB10684.1 | ncoils:Coil |
| Symbol:LINC4 | RefSeq:NP_001154799.1 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31908 | PANTHER:PTHR31908:SF2 | UniParc:UPI0000130267 |
| SEG:seg | : | : | : | : | : |
Description
LINC4little nuclei4 [Source:TAIR;Acc:AT5G65770]
Coordinates
chr5:+:26311587..26315544
Molecular Weight (calculated)
121229.0 Da
IEP (calculated)
5.014
GRAVY (calculated)
-0.959
Length
1042 amino acids
Sequence
(BLAST)
(BLAST)
0001: MATSSRSERF PITPSTAATN RLTITPNSRV LKSPLTEEIM WKRLKDAGFD EQSIKNRDKA ALIAYIAKLE SEVYDYQHNM GLLLLEKNEL SSQYEEIKAS
0101: VDESDLTHMR EKSAYVSALA EAKKREESLK KDVGIAKECI SSLEKTLHEM RAECAETKVS AGSTMSEAHV MIEDALKKLA DAEAKMRAAE ALQAEANRYH
0201: RIAERKLKEV ESREDDLTRR LASFKSECET KENEMVIERQ TLNERRKSLQ QEHERLLDAQ VSLNQREDHI FARSQELAEL EKGLDTAKTT FEEERKAFED
0301: KKSNLEIALA LCAKREEVCF YSHNSLLFLV LHYRSSKKFL GDKIAVSERE SSLLKKEQEL LVAEEKIASK ESELIQNVLA NQEVILRKRK SDVEAELECK
0401: SKSVEVEIES KRRAWELREV DIKQREDLVG EKEHDLEVQS RALAEKEKDI TEKSFNLDEK EKNLVATEED INRKTTMLED EKERLRKLDL ELQQSLTSLE
0501: DKRKRVDSAT QKLEALKSET SELSTLEMKL KEELDDLRAQ KLEMLAEADR LKVEKAKFEA EWEHIDVKRE ELRKEAEYIT RQREAFSMYL KDERDNIKEE
0601: RDALRNQHKN DVESLNRERE EFMNKMVEEH SEWLSKIQRE RADFLLGIEM QKRELEYCIE NKREELENSS RDREKAFEQE KKLEEERIQS LKEMAEKELE
0701: HVQVELKRLD AERLEIKLDR ERREREWAEL KDSVEELKVQ REKLETQRHM LRAERDEIRH EIEELKKLEN LKVALDDMSM AKMQLSNLER SWEKVSALKQ
0801: KVVSRDDELD LQNGVSTVSN SEDGYNSSME RQNGLTPSSA TPFSWIKRCT NLIFKTSPEK STLMHHYEEE GGVPSEKLKL ESSRREEKAY TEGLSIAVER
0901: LEAGRKRRGN TSGDETSEPS NNKKRKHDVT QKYSDEADTQ SVISSPQNVP EDKHELPSSQ TQTPSGMVVI SETVKITRVT CETEVTNKVT TLDCSESPSE
1001: AGRKMGEETE DGDCNQVVFM NSLKKNCLQT LQQMNNTLWL FL
0101: VDESDLTHMR EKSAYVSALA EAKKREESLK KDVGIAKECI SSLEKTLHEM RAECAETKVS AGSTMSEAHV MIEDALKKLA DAEAKMRAAE ALQAEANRYH
0201: RIAERKLKEV ESREDDLTRR LASFKSECET KENEMVIERQ TLNERRKSLQ QEHERLLDAQ VSLNQREDHI FARSQELAEL EKGLDTAKTT FEEERKAFED
0301: KKSNLEIALA LCAKREEVCF YSHNSLLFLV LHYRSSKKFL GDKIAVSERE SSLLKKEQEL LVAEEKIASK ESELIQNVLA NQEVILRKRK SDVEAELECK
0401: SKSVEVEIES KRRAWELREV DIKQREDLVG EKEHDLEVQS RALAEKEKDI TEKSFNLDEK EKNLVATEED INRKTTMLED EKERLRKLDL ELQQSLTSLE
0501: DKRKRVDSAT QKLEALKSET SELSTLEMKL KEELDDLRAQ KLEMLAEADR LKVEKAKFEA EWEHIDVKRE ELRKEAEYIT RQREAFSMYL KDERDNIKEE
0601: RDALRNQHKN DVESLNRERE EFMNKMVEEH SEWLSKIQRE RADFLLGIEM QKRELEYCIE NKREELENSS RDREKAFEQE KKLEEERIQS LKEMAEKELE
0701: HVQVELKRLD AERLEIKLDR ERREREWAEL KDSVEELKVQ REKLETQRHM LRAERDEIRH EIEELKKLEN LKVALDDMSM AKMQLSNLER SWEKVSALKQ
0801: KVVSRDDELD LQNGVSTVSN SEDGYNSSME RQNGLTPSSA TPFSWIKRCT NLIFKTSPEK STLMHHYEEE GGVPSEKLKL ESSRREEKAY TEGLSIAVER
0901: LEAGRKRRGN TSGDETSEPS NNKKRKHDVT QKYSDEADTQ SVISSPQNVP EDKHELPSSQ TQTPSGMVVI SETVKITRVT CETEVTNKVT TLDCSESPSE
1001: AGRKMGEETE DGDCNQVVFM NSLKKNCLQT LQQMNNTLWL FL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.