Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19387 | Canola | nucleus | 73.53 | 73.21 |
| CDX98000 | Canola | nucleus | 71.87 | 70.27 |
| VIT_01s0011g02810.t01 | Wine grape | mitochondrion, plastid | 41.89 | 41.89 |
| AT1G68790.1 | Thale cress | nucleus | 37.51 | 39.45 |
| Os02t0710102-01 | Rice | nucleus | 5.78 | 39.29 |
| KRH75531 | Soybean | nucleus | 31.81 | 37.5 |
| KRH70636 | Soybean | nucleus | 36.72 | 34.63 |
| AT1G67230.1 | Thale cress | nucleus | 33.22 | 33.48 |
| GSMUA_Achr9P21820_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 6.22 | 29.71 |
| GSMUA_Achr8P14400_001 | Banana | cytosol | 30.94 | 29.34 |
| GSMUA_Achr11P... | Banana | nucleus | 31.99 | 28.19 |
| Zm00001d051600_P004 | Maize | nucleus | 28.66 | 28.02 |
| KXG30901 | Sorghum | mitochondrion, nucleus | 27.87 | 27.51 |
| TraesCS6D01G256200.1 | Wheat | nucleus | 27.43 | 27.26 |
| TraesCS6B01G303400.1 | Wheat | nucleus | 27.26 | 27.19 |
| HORVU6Hr1G069560.1 | Barley | nucleus | 26.91 | 26.79 |
| GSMUA_Achr3P28980_001 | Banana | mitochondrion | 21.38 | 23.76 |
| AT5G65780.2 | Thale cress | plastid | 20.68 | 23.18 |
| AT5G65770.2 | Thale cress | plastid | 20.68 | 22.65 |
| GSMUA_Achr6P09340_001 | Banana | cytosol | 31.38 | 22.42 |
| GSMUA_Achr9P21830_001 | Banana | nucleus | 10.6 | 17.16 |
Protein Annotations
| ArrayExpress:AT1G13220 | EnsemblPlants:AT1G13220.3 | EnsemblPlantsGene:AT1G13220 | EntrezGene:837882 | ncoils:Coil | PANTHER:PTHR31908 |
| PANTHER:PTHR31908:SF5 | ProteinID:ANM60501.1 | RefSeq:AT1G13220 | RefSeq:AT1G13220-TAIR-G | RefSeq:NP_001322783.1 | SEG:seg |
| SUPFAM:SSF57997 | Symbol:LINC2 | TAIR:AT1G13220 | UniParc:UPI0008493B13 | UniProt:A0A1P8AUZ9 | MapMan:20.4.3.1 |
Description
LINC2nuclear matrix constituent protein-related [Source:TAIR;Acc:AT1G13220]
Coordinates
chr1:+:4515464..4520306
Molecular Weight (calculated)
131521.0 Da
IEP (calculated)
4.821
GRAVY (calculated)
-1.078
Length
1141 amino acids
Sequence
(BLAST)
(BLAST)
0001: MFTPQRKQWM SPAMTPRSET HKIGGVTNPR NADRKGKAVA FSDDLVIPTL PPPPIGTLTG QGVSRGHTDD MDMGDWRRFR EVGLLNEASM EKKDQEALLE
0101: KISTLEKELY GYQHNMGLLL MENKELVSKH EQLNQAFQEA QEILKREQSS HLYALTTVEQ REENLRKALG LEKQCVQELE KALREIQEEN SKIRLSSEAK
0201: LVEANALVAS VNGRSSDVEN KIYSAESKLA EATRKSSELK LRLKEVETRE SVLQQERLSF TKERESYEGT FQKQREYLNE WEKKLQGKEE SITEQKRNLN
0301: QREEKVNEIE KKLKLKEKEL EEWNRKVDLS MSKSKETEED ITKRLEELTT KEKEAHTLQI TLLAKENELR AFEEKLIARE GTEIQKLIDD QKEVLGSKML
0401: EFELECEEIR KSLDKELQRK IEELERQKVE IDHSEEKLEK RNQAMNKKFD RVNEKEMDLE AKLKTIKERE KIIQAEEKRL SLEKQQLLSD KESLEDLQQE
0501: IEKIRAEMTK KEEMIEEECK SLEIKKEERE EYLRLQSELK SQIEKSRVHE EFLSKEVENL KQEKERFEKE WEILDEKQAV YNKERIRISE EKEKFERFQL
0601: LEGERLKKEE SALRVQIMQE LDDIRLQRES FEANMEHERS ALQEKVKLEQ SKVIDDLEMM RRNLEIELQE RKEQDEKDLL DRMAQFEDKR MAELSDINHQ
0701: KQALNREMEE MMSKRSALQK ESEEIAKHKD KLKEQQVEMH NDISELSTLS INLKKRREVF GRERSRFLAF VQKLKDCGSC GQLVNDFVLS DLQLPSNDEV
0801: AILPPIGVLN DLPGSSNASD SCNIKKSLDG DASGSGGSRR PSMSILQKCT SIIFSPSKRV EHGIDTGKPE QRLSSSVAVG METKGEKPLP VDLRLRPSSS
0901: SIPEEDEEYT DSRVQETSEG SQLSEFQSSR RGRGRPRKAK PALNPTSSVK HASLEESSKD ELSGHVSVTS KKTTGGGGRK RQHIDDTATG GKRRRQQTVA
1001: VLPQTPGQRH YNLRRKKTVD QVPADVEDNA AAGEDDADIA ASAPSKDTVE ETVVETLRAR RIETNADVVS AENNGDVPVA NVEPTVNEDT NEDGDEEEDE
1101: AQDDDNEENQ DDDDDDDGDD DGSPRPGEGS IRKKLWTFLT T
0101: KISTLEKELY GYQHNMGLLL MENKELVSKH EQLNQAFQEA QEILKREQSS HLYALTTVEQ REENLRKALG LEKQCVQELE KALREIQEEN SKIRLSSEAK
0201: LVEANALVAS VNGRSSDVEN KIYSAESKLA EATRKSSELK LRLKEVETRE SVLQQERLSF TKERESYEGT FQKQREYLNE WEKKLQGKEE SITEQKRNLN
0301: QREEKVNEIE KKLKLKEKEL EEWNRKVDLS MSKSKETEED ITKRLEELTT KEKEAHTLQI TLLAKENELR AFEEKLIARE GTEIQKLIDD QKEVLGSKML
0401: EFELECEEIR KSLDKELQRK IEELERQKVE IDHSEEKLEK RNQAMNKKFD RVNEKEMDLE AKLKTIKERE KIIQAEEKRL SLEKQQLLSD KESLEDLQQE
0501: IEKIRAEMTK KEEMIEEECK SLEIKKEERE EYLRLQSELK SQIEKSRVHE EFLSKEVENL KQEKERFEKE WEILDEKQAV YNKERIRISE EKEKFERFQL
0601: LEGERLKKEE SALRVQIMQE LDDIRLQRES FEANMEHERS ALQEKVKLEQ SKVIDDLEMM RRNLEIELQE RKEQDEKDLL DRMAQFEDKR MAELSDINHQ
0701: KQALNREMEE MMSKRSALQK ESEEIAKHKD KLKEQQVEMH NDISELSTLS INLKKRREVF GRERSRFLAF VQKLKDCGSC GQLVNDFVLS DLQLPSNDEV
0801: AILPPIGVLN DLPGSSNASD SCNIKKSLDG DASGSGGSRR PSMSILQKCT SIIFSPSKRV EHGIDTGKPE QRLSSSVAVG METKGEKPLP VDLRLRPSSS
0901: SIPEEDEEYT DSRVQETSEG SQLSEFQSSR RGRGRPRKAK PALNPTSSVK HASLEESSKD ELSGHVSVTS KKTTGGGGRK RQHIDDTATG GKRRRQQTVA
1001: VLPQTPGQRH YNLRRKKTVD QVPADVEDNA AAGEDDADIA ASAPSKDTVE ETVVETLRAR RIETNADVVS AENNGDVPVA NVEPTVNEDT NEDGDEEEDE
1101: AQDDDNEENQ DDDDDDDGDD DGSPRPGEGS IRKKLWTFLT T
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.