Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G337300.1 | Wheat | cytosol | 96.7 | 96.5 |
| TraesCS3A01G299200.1 | Wheat | cytosol | 96.3 | 95.25 |
| HORVU3Hr1G074480.3 | Barley | plasma membrane | 92.19 | 92.66 |
| KXG33452 | Sorghum | cytosol | 62.86 | 62.93 |
| Zm00001d043335_P006 | Maize | extracellular, mitochondrion | 61.16 | 62.8 |
| Solyc02g091960.2.1 | Tomato | nucleus | 19.52 | 40.12 |
| GSMUA_Achr6P31730_001 | Banana | cytosol | 43.04 | 37.62 |
| KRH28315 | Soybean | cytosol | 27.33 | 37.09 |
| PGSC0003DMT400055146 | Potato | plastid | 34.43 | 36.71 |
| VIT_00s0558g00020.t01 | Wine grape | plastid | 38.74 | 34.65 |
| AT5G65780.2 | Thale cress | plastid | 34.83 | 34.18 |
| KRH77170 | Soybean | cytosol | 25.33 | 33.91 |
| CDY45628 | Canola | nucleus, plastid | 34.03 | 33.9 |
| AT5G65770.2 | Thale cress | plastid | 35.03 | 33.59 |
| KRH58169 | Soybean | nucleus | 34.63 | 33.02 |
| Bra037827.1-P | Field mustard | nucleus, plastid | 33.43 | 33.0 |
| KRH04371 | Soybean | cytosol | 34.43 | 32.76 |
| CDY60978 | Canola | nucleus, plastid | 33.33 | 27.36 |
| CDY08750 | Canola | nucleus | 14.71 | 26.78 |
| TraesCS6D01G256200.1 | Wheat | nucleus | 23.12 | 20.12 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G302500.2 | EnsemblPlantsGene:TraesCS3D01G302500 | ncoils:Coil | PANTHER:PTHR31908 | PANTHER:PTHR31908:SF2 | SEG:seg |
| MapMan:20.4.3.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:-:417212394..417217775
Molecular Weight (calculated)
116002.0 Da
IEP (calculated)
4.753
GRAVY (calculated)
-0.993
Length
999 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPRSPAAG ALAGDEAIWR KLREAGFDEE SIRRRDKAAL IAYISRLETE VYDYQHNLGL MLLERKELVS KHEQLKASME SAEIMHKRER ASQQSALAET
101: RKREENLKKN VGIQKECVAN LEKALHDMRA ETAEIKVSYE TKSAEALEMM DTAQKKFDEA EEKLLAAKSL EAECTRARNA ALRSLQDMEE REDQLRRYRL
201: SSDHEYEAKE KDISLQRKSL NDMKKMLHEK EQVLLKEQSL LNQRDENIVE RLARVTQSEK KLEEDKVILE AERMALMEEK NKLDLKMEAV ASREEAIIQK
301: ESLLDKRESE LLILQETIAN KERVEIERLN HEQEMALERR KLEFETEMEN KRLSFEAETE TKRTLLDQRE RALSEQELAF AQRDQNVDLR LAELASKEEA
401: IARRTDELKD EEGKLLSQRE VSYIELQKER EEVQKMKLYL EKEKVFFEEE KREAIQAQQN LAITQADRDD LLTLQIKLKE EIDNLRAQRT ELVADADRLQ
501: AEKERFEIEW ELFDEKKEEL QKEAARITEE RRVMTEYLNN QSDIIKQEKE NLRAEFKKNS ETLSCEHEEF MSKMQQEHAS WLSKIQHERE DLTRDIDNQR
601: MELLNLAKAR QMEIDADLRE REKEFEQKKS MELEHINSQK VMIMSKLDHV ALELQKLEDE RKEANLEREK REQELSEIKN TIEALNNQRE KLQEQRKLLH
701: SDRESITEQI QQLDVLKELK SDSENKQLSL IESEKSKMNY TVLLPCGEVH NSTPKNCSPP KLLERKLEVS PSVSTPVSWV RKCAQVIFKR SPEKSSGHDN
801: GRLIQNGVPK NRRKTADING SLADELGDQA GEIPQVVDGA KVSKKRNYSF SYDPSEVFVE PRRKYQRSTI QTVIGGEVTL NNCPSVLEEK CSKNEHDAAP
901: LGVLSGISKD GNKGPQNLRI PVDSASSDDL AFANGKADNS DFADEDEPSE EITVSATEPT TGALEGRDEH DEDTDDEDEE EEEEEKSSSA KKLWRFLIT
101: RKREENLKKN VGIQKECVAN LEKALHDMRA ETAEIKVSYE TKSAEALEMM DTAQKKFDEA EEKLLAAKSL EAECTRARNA ALRSLQDMEE REDQLRRYRL
201: SSDHEYEAKE KDISLQRKSL NDMKKMLHEK EQVLLKEQSL LNQRDENIVE RLARVTQSEK KLEEDKVILE AERMALMEEK NKLDLKMEAV ASREEAIIQK
301: ESLLDKRESE LLILQETIAN KERVEIERLN HEQEMALERR KLEFETEMEN KRLSFEAETE TKRTLLDQRE RALSEQELAF AQRDQNVDLR LAELASKEEA
401: IARRTDELKD EEGKLLSQRE VSYIELQKER EEVQKMKLYL EKEKVFFEEE KREAIQAQQN LAITQADRDD LLTLQIKLKE EIDNLRAQRT ELVADADRLQ
501: AEKERFEIEW ELFDEKKEEL QKEAARITEE RRVMTEYLNN QSDIIKQEKE NLRAEFKKNS ETLSCEHEEF MSKMQQEHAS WLSKIQHERE DLTRDIDNQR
601: MELLNLAKAR QMEIDADLRE REKEFEQKKS MELEHINSQK VMIMSKLDHV ALELQKLEDE RKEANLEREK REQELSEIKN TIEALNNQRE KLQEQRKLLH
701: SDRESITEQI QQLDVLKELK SDSENKQLSL IESEKSKMNY TVLLPCGEVH NSTPKNCSPP KLLERKLEVS PSVSTPVSWV RKCAQVIFKR SPEKSSGHDN
801: GRLIQNGVPK NRRKTADING SLADELGDQA GEIPQVVDGA KVSKKRNYSF SYDPSEVFVE PRRKYQRSTI QTVIGGEVTL NNCPSVLEEK CSKNEHDAAP
901: LGVLSGISKD GNKGPQNLRI PVDSASSDDL AFANGKADNS DFADEDEPSE EITVSATEPT TGALEGRDEH DEDTDDEDEE EEEEEKSSSA KKLWRFLIT
0001: MATSSRSERF PITPSTAATN RLTITPNSRV LKSPLTEEIM WKRLKDAGFD EQSIKNRDKA ALIAYIAKLE SEVYDYQHNM GLLLLEKNEL SSQYEEIKAS
0101: VDESDLTHMR EKSAYVSALA EAKKREESLK KDVGIAKECI SSLEKTLHEM RAECAETKVS AGSTMSEAHV MIEDALKKLA DAEAKMRAAE ALQAEANRYH
0201: RIAERKLKEV ESREDDLTRR LASFKSECET KENEMVIERQ TLNERRKSLQ QEHERLLDAQ VSLNQREDHI FARSQELAEL EKGLDTAKTT FEEERKAFED
0301: KKSNLEIALA LCAKREEAVS ERESSLLKKE QELLVAEEKI ASKESELIQN VLANQEVILR KRKSDVEAEL ECKSKSVEVE IESKRRAWEL REVDIKQRED
0401: LVGEKEHDLE VQSRALAEKE KDITEKSFNL DEKEKNLVAT EEDINRKTTM LEDEKERLRK LDLELQQSLT SLEDKRKRVD SATQKLEALK SETSELSTLE
0501: MKLKEELDDL RAQKLEMLAE ADRLKVEKAK FEAEWEHIDV KREELRKEAE YITRQREAFS MYLKDERDNI KEERDALRNQ HKNDVESLNR EREEFMNKMV
0601: EEHSEWLSKI QRERADFLLG IEMQKRELEY CIENKREELE NSSRDREKAF EQEKKLEEER IQSLKEMAEK ELEHVQVELK RLDAERLEIK LDRERREREW
0701: AELKDSVEEL KVQREKLETQ RHMLRAERDE IRHEIEELKK LENLKVALDD MSMAKMQLSN LERSWEKVSA LKQKVVSRDD ELDLQNGVST VSNSEDGYNS
0801: SMERQNGLTP SSATPFSWIK RCTNLIFKTS PEKSTLMHHY EEEGGVPSEK LKLESSRREE KAYTEGLSIA VERLEAGRKR RGNTSGDETS EPSNNKKRKH
0901: DVTQKYSDEA DTQSVISSPQ NVPEDKHELP SSQTQTPSGM VVISETVKIT RVTCETEVTN KVTTLDCSES PSEAGRKMGE ETEDGDCNQT GINASETVIH
1001: NEAATEDICT
0101: VDESDLTHMR EKSAYVSALA EAKKREESLK KDVGIAKECI SSLEKTLHEM RAECAETKVS AGSTMSEAHV MIEDALKKLA DAEAKMRAAE ALQAEANRYH
0201: RIAERKLKEV ESREDDLTRR LASFKSECET KENEMVIERQ TLNERRKSLQ QEHERLLDAQ VSLNQREDHI FARSQELAEL EKGLDTAKTT FEEERKAFED
0301: KKSNLEIALA LCAKREEAVS ERESSLLKKE QELLVAEEKI ASKESELIQN VLANQEVILR KRKSDVEAEL ECKSKSVEVE IESKRRAWEL REVDIKQRED
0401: LVGEKEHDLE VQSRALAEKE KDITEKSFNL DEKEKNLVAT EEDINRKTTM LEDEKERLRK LDLELQQSLT SLEDKRKRVD SATQKLEALK SETSELSTLE
0501: MKLKEELDDL RAQKLEMLAE ADRLKVEKAK FEAEWEHIDV KREELRKEAE YITRQREAFS MYLKDERDNI KEERDALRNQ HKNDVESLNR EREEFMNKMV
0601: EEHSEWLSKI QRERADFLLG IEMQKRELEY CIENKREELE NSSRDREKAF EQEKKLEEER IQSLKEMAEK ELEHVQVELK RLDAERLEIK LDRERREREW
0701: AELKDSVEEL KVQREKLETQ RHMLRAERDE IRHEIEELKK LENLKVALDD MSMAKMQLSN LERSWEKVSA LKQKVVSRDD ELDLQNGVST VSNSEDGYNS
0801: SMERQNGLTP SSATPFSWIK RCTNLIFKTS PEKSTLMHHY EEEGGVPSEK LKLESSRREE KAYTEGLSIA VERLEAGRKR RGNTSGDETS EPSNNKKRKH
0901: DVTQKYSDEA DTQSVISSPQ NVPEDKHELP SSQTQTPSGM VVISETVKIT RVTCETEVTN KVTTLDCSES PSEAGRKMGE ETEDGDCNQT GINASETVIH
1001: NEAATEDICT
Arabidopsis Description
LINC4little nuclei4 [Source:TAIR;Acc:AT5G65770]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.