Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH28315 | Soybean | cytosol | 27.73 | 43.07 |
| TraesCS3D01G302500.2 | Wheat | cytosol | 37.62 | 43.04 |
| TraesCS3B01G337300.1 | Wheat | cytosol | 37.53 | 42.86 |
| Solyc02g091960.2.1 | Tomato | nucleus | 18.2 | 42.8 |
| TraesCS3A01G299200.1 | Wheat | cytosol | 37.45 | 42.38 |
| Zm00001d043335_P006 | Maize | extracellular, mitochondrion | 35.87 | 42.14 |
| HORVU3Hr1G074480.3 | Barley | plasma membrane | 36.48 | 41.95 |
| PGSC0003DMT400055146 | Potato | plastid | 33.77 | 41.2 |
| KXG33452 | Sorghum | cytosol | 35.78 | 40.98 |
| VIT_00s0558g00020.t01 | Wine grape | plastid | 39.55 | 40.47 |
| KRH77170 | Soybean | cytosol | 26.16 | 40.08 |
| Bra037827.1-P | Field mustard | nucleus, plastid | 33.16 | 37.45 |
| AT5G65780.2 | Thale cress | plastid | 33.25 | 37.33 |
| CDY45628 | Canola | nucleus, plastid | 32.46 | 36.99 |
| KRH04371 | Soybean | cytosol | 33.86 | 36.86 |
| KRH58169 | Soybean | nucleus | 33.77 | 36.83 |
| AT5G65770.2 | Thale cress | plastid | 33.42 | 36.66 |
| CDY60978 | Canola | nucleus, plastid | 33.6 | 31.55 |
| CDY08750 | Canola | nucleus | 14.44 | 30.05 |
| GSMUA_Achr9P21820_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 5.25 | 25.1 |
| GSMUA_Achr8P14400_001 | Banana | cytosol | 23.18 | 22.03 |
| GSMUA_Achr11P... | Banana | nucleus | 23.97 | 21.16 |
| GSMUA_Achr3P28980_001 | Banana | mitochondrion | 17.59 | 19.57 |
| GSMUA_Achr6P09340_001 | Banana | cytosol | 23.88 | 17.09 |
| GSMUA_Achr9P21830_001 | Banana | nucleus | 9.45 | 15.32 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P31730_001 | EnsemblPlants:GSMUA_Achr6T31730_001 | EnsemblPlantsGene:GSMUA_Achr6G31730_001 | ncoils:Coil | PANTHER:PTHR31908 | PANTHER:PTHR31908:SF2 |
| SEG:seg | UniParc:UPI00029658E8 | UniProt:M0TBW8 | MapMan:20.4.3.1 | : | : |
Description
Putative nuclear matrix constituent protein 1-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G31730_001]
Coordinates
chr6:+:31418554..31428780
Molecular Weight (calculated)
132153.0 Da
IEP (calculated)
4.905
GRAVY (calculated)
-0.972
Length
1143 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTSPRPGGTP ASRAVNASKT PATGGTPLGD DAIWKRLKES GLDEESVKRR DKAALISYIT KLESEIYEYQ HHMGLLILER KELVSKYEQV KASSDSAEIA
0101: YKREEAKRSS ALAEARKREL NLEKLLGIQK ECVANIEKAL HDNLVESAER KLGYESKIAE AHAMMTAAQE KLDEAEKKLL AAESLQAEAN RTRNTAIRTL
0201: DDVEAREDEL RRRLATFKSQ CDAKENEISI QRQALYESQK TLHQQQERFL EGQTLLNQRE EYIFERTKEL NRIEKELEES KANIEEESRT LKLERSNLDL
0301: EIAALRNREE VIVKRESMLD KRERELLILQ EKIACREHDE IQRIMEEHQS ILEKKKSELE ADIEQRHLLL KNELEAKKIA CEIREADLCS REISLQEKEH
0401: AIELQSSVLA KKQEDVANKL RLLEDKEHNL SSTKREAEIE VQNMQKEREI FLKMKVDLEK TKAVLEDEKK EIILAEEKFE ITLGERNELL LLENKLKEEI
0501: DSLRAQKLAL VAEADILKAE KEKFEIEWEM IDEKREDLQK EAERIDEERK TLAQYLKNEH DSIKLEKENL HNQFKRDVER LSCEREEFIC EMDRQHSDWF
0601: TKMQQERENF TKDIGIQRNE LENSINERRE EIETYLREKE ESFEKDKVKE LQLINSQKDM IAKQLEHVAS EMQKLNTERL EIAQDREQRE REWADIKRFT
0701: EALDLQCEKL QKQRELLHAE REEINQKIQQ LKKLEELQIE SENRALSVMQ TDKCDASVGK SCQCINGADR HIATPNGVST MKLLPQGTPN PSTPTSVTKS
0801: WIKKCTEAMF KHSPEKDSDT GHEENVESKM LAKSRDFRFS EMDLQGHGNF AEGKEVSVQE MDNFTPKRTK SNRQEKVNGQ EIKCVRCNFD EQNMISDARP
0901: VAKSAQSPSE VGANSIKFNQ ALEDSGQKSR TLFSSINSWI SRRKRSNDML SHDHADMDSE PNPKQQKRPR QNGNSDVEGD SSNGLAEQQP NIDDECEPVL
1001: RNQTSGCEQL HAVAFKDQQH ENMVVPNAEP IESSQHKLAV SNFDIVENGN FCKFEHSPLA GVGAATSSDA NEISMKDKQV FDKEHIARKP SQETSVSASD
1101: LIVEDNDKLK EQDRYNEVLD ELEDEDDGSG LSVKEKIWNF LIT
0101: YKREEAKRSS ALAEARKREL NLEKLLGIQK ECVANIEKAL HDNLVESAER KLGYESKIAE AHAMMTAAQE KLDEAEKKLL AAESLQAEAN RTRNTAIRTL
0201: DDVEAREDEL RRRLATFKSQ CDAKENEISI QRQALYESQK TLHQQQERFL EGQTLLNQRE EYIFERTKEL NRIEKELEES KANIEEESRT LKLERSNLDL
0301: EIAALRNREE VIVKRESMLD KRERELLILQ EKIACREHDE IQRIMEEHQS ILEKKKSELE ADIEQRHLLL KNELEAKKIA CEIREADLCS REISLQEKEH
0401: AIELQSSVLA KKQEDVANKL RLLEDKEHNL SSTKREAEIE VQNMQKEREI FLKMKVDLEK TKAVLEDEKK EIILAEEKFE ITLGERNELL LLENKLKEEI
0501: DSLRAQKLAL VAEADILKAE KEKFEIEWEM IDEKREDLQK EAERIDEERK TLAQYLKNEH DSIKLEKENL HNQFKRDVER LSCEREEFIC EMDRQHSDWF
0601: TKMQQERENF TKDIGIQRNE LENSINERRE EIETYLREKE ESFEKDKVKE LQLINSQKDM IAKQLEHVAS EMQKLNTERL EIAQDREQRE REWADIKRFT
0701: EALDLQCEKL QKQRELLHAE REEINQKIQQ LKKLEELQIE SENRALSVMQ TDKCDASVGK SCQCINGADR HIATPNGVST MKLLPQGTPN PSTPTSVTKS
0801: WIKKCTEAMF KHSPEKDSDT GHEENVESKM LAKSRDFRFS EMDLQGHGNF AEGKEVSVQE MDNFTPKRTK SNRQEKVNGQ EIKCVRCNFD EQNMISDARP
0901: VAKSAQSPSE VGANSIKFNQ ALEDSGQKSR TLFSSINSWI SRRKRSNDML SHDHADMDSE PNPKQQKRPR QNGNSDVEGD SSNGLAEQQP NIDDECEPVL
1001: RNQTSGCEQL HAVAFKDQQH ENMVVPNAEP IESSQHKLAV SNFDIVENGN FCKFEHSPLA GVGAATSSDA NEISMKDKQV FDKEHIARKP SQETSVSASD
1101: LIVEDNDKLK EQDRYNEVLD ELEDEDDGSG LSVKEKIWNF LIT
0001: MATSSRSERF PITPSTAATN RLTITPNSRV LKSPLTEEIM WKRLKDAGFD EQSIKNRDKA ALIAYIAKLE SEVYDYQHNM GLLLLEKNEL SSQYEEIKAS
0101: VDESDLTHMR EKSAYVSALA EAKKREESLK KDVGIAKECI SSLEKTLHEM RAECAETKVS AGSTMSEAHV MIEDALKKLA DAEAKMRAAE ALQAEANRYH
0201: RIAERKLKEV ESREDDLTRR LASFKSECET KENEMVIERQ TLNERRKSLQ QEHERLLDAQ VSLNQREDHI FARSQELAEL EKGLDTAKTT FEEERKAFED
0301: KKSNLEIALA LCAKREEAVS ERESSLLKKE QELLVAEEKI ASKESELIQN VLANQEVILR KRKSDVEAEL ECKSKSVEVE IESKRRAWEL REVDIKQRED
0401: LVGEKEHDLE VQSRALAEKE KDITEKSFNL DEKEKNLVAT EEDINRKTTM LEDEKERLRK LDLELQQSLT SLEDKRKRVD SATQKLEALK SETSELSTLE
0501: MKLKEELDDL RAQKLEMLAE ADRLKVEKAK FEAEWEHIDV KREELRKEAE YITRQREAFS MYLKDERDNI KEERDALRNQ HKNDVESLNR EREEFMNKMV
0601: EEHSEWLSKI QRERADFLLG IEMQKRELEY CIENKREELE NSSRDREKAF EQEKKLEEER IQSLKEMAEK ELEHVQVELK RLDAERLEIK LDRERREREW
0701: AELKDSVEEL KVQREKLETQ RHMLRAERDE IRHEIEELKK LENLKVALDD MSMAKMQLSN LERSWEKVSA LKQKVVSRDD ELDLQNGVST VSNSEDGYNS
0801: SMERQNGLTP SSATPFSWIK RCTNLIFKTS PEKSTLMHHY EEEGGVPSEK LKLESSRREE KAYTEGLSIA VERLEAGRKR RGNTSGDETS EPSNNKKRKH
0901: DVTQKYSDEA DTQSVISSPQ NVPEDKHELP SSQTQTPSGM VVISETVKIT RVTCETEVTN KVTTLDCSES PSEAGRKMGE ETEDGDCNQT GINASETVIH
1001: NEAATEDICT
0101: VDESDLTHMR EKSAYVSALA EAKKREESLK KDVGIAKECI SSLEKTLHEM RAECAETKVS AGSTMSEAHV MIEDALKKLA DAEAKMRAAE ALQAEANRYH
0201: RIAERKLKEV ESREDDLTRR LASFKSECET KENEMVIERQ TLNERRKSLQ QEHERLLDAQ VSLNQREDHI FARSQELAEL EKGLDTAKTT FEEERKAFED
0301: KKSNLEIALA LCAKREEAVS ERESSLLKKE QELLVAEEKI ASKESELIQN VLANQEVILR KRKSDVEAEL ECKSKSVEVE IESKRRAWEL REVDIKQRED
0401: LVGEKEHDLE VQSRALAEKE KDITEKSFNL DEKEKNLVAT EEDINRKTTM LEDEKERLRK LDLELQQSLT SLEDKRKRVD SATQKLEALK SETSELSTLE
0501: MKLKEELDDL RAQKLEMLAE ADRLKVEKAK FEAEWEHIDV KREELRKEAE YITRQREAFS MYLKDERDNI KEERDALRNQ HKNDVESLNR EREEFMNKMV
0601: EEHSEWLSKI QRERADFLLG IEMQKRELEY CIENKREELE NSSRDREKAF EQEKKLEEER IQSLKEMAEK ELEHVQVELK RLDAERLEIK LDRERREREW
0701: AELKDSVEEL KVQREKLETQ RHMLRAERDE IRHEIEELKK LENLKVALDD MSMAKMQLSN LERSWEKVSA LKQKVVSRDD ELDLQNGVST VSNSEDGYNS
0801: SMERQNGLTP SSATPFSWIK RCTNLIFKTS PEKSTLMHHY EEEGGVPSEK LKLESSRREE KAYTEGLSIA VERLEAGRKR RGNTSGDETS EPSNNKKRKH
0901: DVTQKYSDEA DTQSVISSPQ NVPEDKHELP SSQTQTPSGM VVISETVKIT RVTCETEVTN KVTTLDCSES PSEAGRKMGE ETEDGDCNQT GINASETVIH
1001: NEAATEDICT
Arabidopsis Description
LINC4little nuclei4 [Source:TAIR;Acc:AT5G65770]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.