Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- nucleus 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g089800.2.1 | Tomato | nucleus | 81.53 | 85.36 |
| PGSC0003DMT400008676 | Potato | cytosol | 58.31 | 60.6 |
| CDY67849 | Canola | cytosol, mitochondrion, nucleus, plastid | 15.3 | 56.68 |
| CDX96106 | Canola | cytosol | 35.0 | 51.16 |
| Bra004210.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 42.13 | 44.89 |
| VIT_14s0006g03280.t01 | Wine grape | nucleus | 49.52 | 44.72 |
| CDY01790 | Canola | cytosol, mitochondrion, nucleus, plastid | 42.92 | 44.48 |
| CDY12630 | Canola | mitochondrion | 16.8 | 43.41 |
| CDY12631 | Canola | golgi, mitochondrion, nucleus, plastid | 36.85 | 43.24 |
| KRH01492 | Soybean | nucleus | 44.33 | 42.32 |
| AT1G67230.1 | Thale cress | nucleus | 42.13 | 42.31 |
| KRH45183 | Soybean | nucleus | 44.15 | 42.15 |
| Bra034012.1-P | Field mustard | cytosol | 41.07 | 41.88 |
| CDY46040 | Canola | cytosol | 39.49 | 41.23 |
| Os02t0710102-01 | Rice | nucleus | 5.89 | 39.88 |
| CDY67848 | Canola | nucleus | 26.74 | 39.38 |
| GSMUA_Achr9P21820_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 7.39 | 35.15 |
| GSMUA_Achr8P14400_001 | Banana | cytosol | 34.92 | 33.0 |
| KXG30901 | Sorghum | mitochondrion, nucleus | 30.78 | 30.28 |
| GSMUA_Achr11P... | Banana | nucleus | 34.3 | 30.12 |
| TraesCS6D01G256200.1 | Wheat | nucleus | 30.17 | 29.88 |
| HORVU6Hr1G069560.1 | Barley | nucleus | 29.99 | 29.76 |
| Zm00001d051600_P004 | Maize | nucleus | 30.52 | 29.73 |
| TraesCS6B01G303400.1 | Wheat | nucleus | 29.82 | 29.63 |
| PGSC0003DMT400055146 | Potato | plastid | 23.13 | 28.07 |
| GSMUA_Achr3P28980_001 | Banana | mitochondrion | 22.78 | 25.22 |
| GSMUA_Achr6P09340_001 | Banana | cytosol | 33.77 | 24.05 |
| GSMUA_Achr9P21830_001 | Banana | nucleus | 12.49 | 20.14 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400026042 | EnsemblPlantsGene:PGSC0003DMG402010047 | EntrezGene:102583890 | ncoils:Coil | PANTHER:PTHR31908 | PANTHER:PTHR31908:SF3 |
| PGSC:PGSC0003DMG402010047 | RefSeq:XP_006338281.1 | SEG:seg | UniParc:UPI0002966A66 | UniProt:M1AMJ3 | MapMan:20.4.3.1 |
Description
DNA double-strand break repair rad50 ATPase [Source:PGSC_GENE;Acc:PGSC0003DMG402010047]
Coordinates
chr2:+:44918163..44925219
Molecular Weight (calculated)
130584.0 Da
IEP (calculated)
4.868
GRAVY (calculated)
-1.097
Length
1137 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSTPPRKSWT GWSLSPRTEP VDKGKGIAFT GTAHKSLTSQ DYGNMDQEAL IEKVSKLENE LFDYQYNMGL LLLEKKEWSS KFEEIKQALE ELNEAYRREQ
0101: AAHLIAISEV EKREENLRKA LGVEKQFARE LEKELREMRS EYAETKYTAD SKLAEANALA TSVEEKSLEV EAKLRAADAK LAEVSRKSSE IERKLNAVYA
0201: QENALRREQS SFNAEREAYE TNLSRQREDL QEWERKLQAA EEKLADGRRL LNQREQRAND TDRILRQKQN DLEDEQRKIV TANSVLRKKE DDMSSQIEDL
0301: THKEKELEDA RKSLEIKERE LLDLQEKLNI KERDGIQNLM DEQRSVLHSK EEEFELELRQ RRASLDEELK GKVLELEKKE AEVNHMEEKI KKREQAVEKK
0401: MEKVKEKEKD HELKLKALKE KEKSLKNEEK FLGTERKQLD SEKENLLALK AELENVRAEL EKQQIKISED TEQLKIIEDE RMEYARLQSE LKQEIDKCRL
0501: LREDLLKEAE DLKQEKERFE REWEELDEKR SEIKINLQEL NEQSANFKKL KCTEEERISK EKLETENYVQ RELEALRVAR EAFEATMDHD KSILAEETQS
0601: EKSQMLHAYE QQKRELESDM QRKQEEMESA LHVQEKLFEE ERQKELSNIE YLKEITHREM EEMKLERVSL EKEKQEISAN KGILEVQQLE MKKDIDVLVG
0701: LSRKLKDQRL AYIKERDRFI DFVKQQKSCS SCGEGIHVIE FYDLEALAEA ETFEAPPLPS VAQEYLKDGL QGSPGRASDE LSPGALNTGS MVSAGTMSWL
0801: RKCTSKILKF SPSKNIGNAA SDCLIDESSL SQKCAGISPN KQSNKGNPMN LSVSMNVLDD QRVQQDDGVR EVKVGQDNVE DSHHSDMKAG QRRTVKKGRG
0901: RSSKTEKAAN TRTFLGKIPK EGENITNGSL ETSDNMNEES QRGSGLLGGA PRNARKRSHT SQGTASEIDG NNSEGQSDSV ASIRGKRRQQ AAPSVQAHAE
1001: RRYNLRRPRS AAPATSNGSL PDPVSESQEE NRNSKASLQT PQVNNSEDVK DRNFVIGHPT VAESPLNDAV DNQESSANMA NELLDDTGLS EEVNETPKRP
1101: SAYRDEEGSD DSDDEEEEIE HPGEVSVGKK IWTFITT
0101: AAHLIAISEV EKREENLRKA LGVEKQFARE LEKELREMRS EYAETKYTAD SKLAEANALA TSVEEKSLEV EAKLRAADAK LAEVSRKSSE IERKLNAVYA
0201: QENALRREQS SFNAEREAYE TNLSRQREDL QEWERKLQAA EEKLADGRRL LNQREQRAND TDRILRQKQN DLEDEQRKIV TANSVLRKKE DDMSSQIEDL
0301: THKEKELEDA RKSLEIKERE LLDLQEKLNI KERDGIQNLM DEQRSVLHSK EEEFELELRQ RRASLDEELK GKVLELEKKE AEVNHMEEKI KKREQAVEKK
0401: MEKVKEKEKD HELKLKALKE KEKSLKNEEK FLGTERKQLD SEKENLLALK AELENVRAEL EKQQIKISED TEQLKIIEDE RMEYARLQSE LKQEIDKCRL
0501: LREDLLKEAE DLKQEKERFE REWEELDEKR SEIKINLQEL NEQSANFKKL KCTEEERISK EKLETENYVQ RELEALRVAR EAFEATMDHD KSILAEETQS
0601: EKSQMLHAYE QQKRELESDM QRKQEEMESA LHVQEKLFEE ERQKELSNIE YLKEITHREM EEMKLERVSL EKEKQEISAN KGILEVQQLE MKKDIDVLVG
0701: LSRKLKDQRL AYIKERDRFI DFVKQQKSCS SCGEGIHVIE FYDLEALAEA ETFEAPPLPS VAQEYLKDGL QGSPGRASDE LSPGALNTGS MVSAGTMSWL
0801: RKCTSKILKF SPSKNIGNAA SDCLIDESSL SQKCAGISPN KQSNKGNPMN LSVSMNVLDD QRVQQDDGVR EVKVGQDNVE DSHHSDMKAG QRRTVKKGRG
0901: RSSKTEKAAN TRTFLGKIPK EGENITNGSL ETSDNMNEES QRGSGLLGGA PRNARKRSHT SQGTASEIDG NNSEGQSDSV ASIRGKRRQQ AAPSVQAHAE
1001: RRYNLRRPRS AAPATSNGSL PDPVSESQEE NRNSKASLQT PQVNNSEDVK DRNFVIGHPT VAESPLNDAV DNQESSANMA NELLDDTGLS EEVNETPKRP
1101: SAYRDEEGSD DSDDEEEEIE HPGEVSVGKK IWTFITT
0001: MSTPLKVWQR WSTPTKATNP DSNGSSHGTG LDMVTPVSGR VSEIQFDDPR ILPEKISELE KELFEYQHSM GLLLIEKKEW SSQYEALQQA FEEVNECLKQ
0101: ERNAHLIAIA DVEKREEGLR KALGIEKQCA LDLEKALKEL RAENAEIKFT ADSKLTEANA LVRSVEEKSL EVEAKLRAVD AKLAEVSRKS SDVERKAKEV
0201: EARESSLQRE RFSYIAEREA DEATLSKQRE DLREWERKLQ EGEERVAKSQ MIVKQREDRA NESDKIIKQK GKELEEAQKK IDAANLAVKK LEDDVSSRIK
0301: DLALREQETD VLKKSIETKA RELQALQEKL EAREKMAVQQ LVDEHQAKLD STQREFELEM EQKRKSIDDS LKSKVAEVEK REAEWKHMEE KVAKREQALD
0401: RKLEKHKEKE NDFDLRLKGI SGREKALKSE EKALETEKKK LLEDKEIILN LKALVEKVSG ENQAQLSEIN KEKDELRVTE EERSEYLRLQ TELKEQIEKC
0501: RSQQELLQKE AEDLKAQRES FEKEWEELDE RKAKIGNELK NITDQKEKLE RHIHLEEERL KKEKQAANEN MERELETLEV AKASFAETME YERSMLSKKA
0601: ESERSQLLHD IEMRKRKLES DMQTILEEKE RELQAKKKLF EEEREKELSN INYLRDVARR EMMDMQNERQ RIEKEKLEVD SSKNHLEEQQ TEIRKDVDDL
0701: VALTKKLKEQ REQFISERSR FLSSMESNRN CSRCGELLSE LVLPEIDNLE MPNMSKLANI LDNEAPRQEM RDISPTAAGL GLPVTGGKVS WFRKCTSKML
0801: KLSPIKMTEP SVTWNLADQE PQSTEQANVG GPSTTVQAAT TYSFDVQKAE SETGTKEVEV TNVNSDGDQS DINSKAQEVA ADSLSNLDVD GQSRMKGKGK
0901: ARTRRTRSVK DVVDDAKALY GESINLYEPN DSTENVDDST KASTGETGRS DKAISKNGRK RGRVGSLRTC TTEQDGNESD GKSDSVTGGA HQRKRRQKVA
1001: SEQQGEVVGQ RYNLRRPRRV TGEPALSKKN EDIGGVQQEE GIHCTQATAT ASVGVAVSDN GVSTNVVQHE ATADSEDTDA GSPKRTDESE AMSEDVNKTP
1101: LRADSDGEDD ESDAEHPGKV SIGKKLWTFL TT
0101: ERNAHLIAIA DVEKREEGLR KALGIEKQCA LDLEKALKEL RAENAEIKFT ADSKLTEANA LVRSVEEKSL EVEAKLRAVD AKLAEVSRKS SDVERKAKEV
0201: EARESSLQRE RFSYIAEREA DEATLSKQRE DLREWERKLQ EGEERVAKSQ MIVKQREDRA NESDKIIKQK GKELEEAQKK IDAANLAVKK LEDDVSSRIK
0301: DLALREQETD VLKKSIETKA RELQALQEKL EAREKMAVQQ LVDEHQAKLD STQREFELEM EQKRKSIDDS LKSKVAEVEK REAEWKHMEE KVAKREQALD
0401: RKLEKHKEKE NDFDLRLKGI SGREKALKSE EKALETEKKK LLEDKEIILN LKALVEKVSG ENQAQLSEIN KEKDELRVTE EERSEYLRLQ TELKEQIEKC
0501: RSQQELLQKE AEDLKAQRES FEKEWEELDE RKAKIGNELK NITDQKEKLE RHIHLEEERL KKEKQAANEN MERELETLEV AKASFAETME YERSMLSKKA
0601: ESERSQLLHD IEMRKRKLES DMQTILEEKE RELQAKKKLF EEEREKELSN INYLRDVARR EMMDMQNERQ RIEKEKLEVD SSKNHLEEQQ TEIRKDVDDL
0701: VALTKKLKEQ REQFISERSR FLSSMESNRN CSRCGELLSE LVLPEIDNLE MPNMSKLANI LDNEAPRQEM RDISPTAAGL GLPVTGGKVS WFRKCTSKML
0801: KLSPIKMTEP SVTWNLADQE PQSTEQANVG GPSTTVQAAT TYSFDVQKAE SETGTKEVEV TNVNSDGDQS DINSKAQEVA ADSLSNLDVD GQSRMKGKGK
0901: ARTRRTRSVK DVVDDAKALY GESINLYEPN DSTENVDDST KASTGETGRS DKAISKNGRK RGRVGSLRTC TTEQDGNESD GKSDSVTGGA HQRKRRQKVA
1001: SEQQGEVVGQ RYNLRRPRRV TGEPALSKKN EDIGGVQQEE GIHCTQATAT ASVGVAVSDN GVSTNVVQHE ATADSEDTDA GSPKRTDESE AMSEDVNKTP
1101: LRADSDGEDD ESDAEHPGKV SIGKKLWTFL TT
Arabidopsis Description
CRWN1Protein CROWDED NUCLEI 1 [Source:UniProtKB/Swiss-Prot;Acc:F4HRT5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.