Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400026042 | Potato | cytosol, mitochondrion, nucleus, plastid | 85.36 | 81.53 |
| Solyc03g045050.2.1 | Tomato | nucleus | 60.31 | 56.13 |
| CDY67849 | Canola | cytosol, mitochondrion, nucleus, plastid | 14.73 | 52.12 |
| CDX96106 | Canola | cytosol | 35.17 | 49.1 |
| VIT_14s0006g03280.t01 | Wine grape | nucleus | 50.0 | 43.13 |
| Bra004210.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 41.8 | 42.55 |
| CDY01790 | Canola | cytosol, mitochondrion, nucleus, plastid | 42.91 | 42.48 |
| CDY12631 | Canola | golgi, mitochondrion, nucleus, plastid | 37.57 | 42.11 |
| CDY12630 | Canola | mitochondrion | 17.04 | 42.05 |
| AT1G67230.1 | Thale cress | nucleus | 43.65 | 41.87 |
| KRH01492 | Soybean | nucleus | 44.66 | 40.72 |
| KRH45183 | Soybean | nucleus | 44.66 | 40.72 |
| Bra034012.1-P | Field mustard | cytosol | 41.44 | 40.36 |
| Os02t0710102-01 | Rice | nucleus | 6.17 | 39.88 |
| CDY46040 | Canola | cytosol | 39.96 | 39.85 |
| CDY67848 | Canola | nucleus | 27.44 | 38.6 |
| GSMUA_Achr9P21820_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 7.18 | 32.64 |
| GSMUA_Achr8P14400_001 | Banana | cytosol | 34.07 | 30.76 |
| Solyc02g091960.2.1 | Tomato | nucleus | 13.72 | 30.66 |
| KXG30901 | Sorghum | mitochondrion, nucleus | 31.49 | 29.58 |
| TraesCS6B01G303400.1 | Wheat | nucleus | 30.66 | 29.11 |
| TraesCS6D01G256200.1 | Wheat | nucleus | 30.76 | 29.09 |
| Zm00001d051600_P004 | Maize | nucleus | 31.22 | 29.05 |
| HORVU6Hr1G069560.1 | Barley | nucleus | 30.57 | 28.97 |
| GSMUA_Achr11P... | Banana | nucleus | 34.07 | 28.57 |
| GSMUA_Achr3P28980_001 | Banana | mitochondrion | 22.1 | 23.37 |
| GSMUA_Achr6P09340_001 | Banana | cytosol | 33.52 | 22.79 |
| GSMUA_Achr9P21830_001 | Banana | nucleus | 12.62 | 19.43 |
Protein Annotations
| EnsemblPlants:Solyc02g089800.2.1 | EnsemblPlantsGene:Solyc02g089800.2 | ncoils:Coil | PANTHER:PTHR31908 | PANTHER:PTHR31908:SF3 | SEG:seg |
| UniParc:UPI0002768E55 | UniProt:K4BCD1 | MapMan:20.4.3.1 | : | : | : |
Description
No Description!
Coordinates
chr2:-:51497679..51504492
Molecular Weight (calculated)
124983.0 Da
IEP (calculated)
4.847
GRAVY (calculated)
-1.081
Length
1086 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDQEELIEKV SKLENELFDY QYNMGLILLE KKEWSSKFEE IKQTLEESNE AYRREQAAHL IAISEVEKRE ENLRKALGVE KQFARELEKE LREMRLEYAE
0101: IKYTADSKLA EANALATSVE EKSLEVEAKL RAADAKLAEV NRRSSEVERK LNEVYAQENS LRRERSSFNA EREAYETNLS RQREDSQEWE RKLQAAEEKL
0201: ADGQRLLNQR EKRANDTDRI LRQKQNDLED EQRKIVTANS VLRKKEDDMG SKIEDLTHKE KELEDARKSL GIKERELLDL QEKLNIKERD GIQNLMDEHR
0301: SVLRSKEKEF ELELWQRRAS LDEELKGKVL ELEKKEAEVN HMEEKIKKRE QVVEKKTEKV KEKEKDHELK LKALKEKEKS LKNEEKILGT ERKQLDSEKG
0401: NLLALKAELE NVRAELEKQQ IKISEGTEQL KITEDERMEH SRLQSELKQE IVKCRLLRED LLKEAEDLKQ EKERFEREWE ELDEKRSEIK IDLQELNERR
0501: ENLEKLKRSE EERISKEKLE TDNYVQMELE ALRVARETFE ATMDHEKSIL AEETRSEKSQ MLHAYEQQKR ELESDMQRKQ EEMESALRVQ EKLFEEESQK
0601: ELSNIEYIKE ITHREMEEMK LERVSLEKEK QEISANKGIL EVQQLEMKKD IDVLVGLSRK LKDQRLAYIK ERERFIDFVK QQKSCSSCGE GIHVIEFSDL
0701: QALAEAETFE APPLPSVAQE YLKDGLQGSP GRASDELSPG ALDTASMVSA GTMSWFRKCT SKILKFSPSK NIGNVASDCL VDESSLSQKC AGISPNKQSK
0801: EGNPMDLSIS MNVLDDQRVQ QDDGVREVKV GQDNVEDSHH SDMKAGQRRT VKKGRGRTSK TEKAANMTVL GKISKEGENI TNGSLETSVN MNEESQRGSG
0901: LLGGAPRNSR KRSHTSQGTA CEIDGNNSEG QSDSVASIRG KRRQQAAPSV QAHAERRYNL RRPRSAAPAA SYGSLPEPVV KSQEENQNSK ASLQTPQVNN
1001: SEDVIDHPTV SESPFNDAVD NLESSANKVN ELLDDTGLSE EVNVTPKRPS ASSDEEGSDD SDDEEEEIEH PGEVSVGKKI WTFITT
0101: IKYTADSKLA EANALATSVE EKSLEVEAKL RAADAKLAEV NRRSSEVERK LNEVYAQENS LRRERSSFNA EREAYETNLS RQREDSQEWE RKLQAAEEKL
0201: ADGQRLLNQR EKRANDTDRI LRQKQNDLED EQRKIVTANS VLRKKEDDMG SKIEDLTHKE KELEDARKSL GIKERELLDL QEKLNIKERD GIQNLMDEHR
0301: SVLRSKEKEF ELELWQRRAS LDEELKGKVL ELEKKEAEVN HMEEKIKKRE QVVEKKTEKV KEKEKDHELK LKALKEKEKS LKNEEKILGT ERKQLDSEKG
0401: NLLALKAELE NVRAELEKQQ IKISEGTEQL KITEDERMEH SRLQSELKQE IVKCRLLRED LLKEAEDLKQ EKERFEREWE ELDEKRSEIK IDLQELNERR
0501: ENLEKLKRSE EERISKEKLE TDNYVQMELE ALRVARETFE ATMDHEKSIL AEETRSEKSQ MLHAYEQQKR ELESDMQRKQ EEMESALRVQ EKLFEEESQK
0601: ELSNIEYIKE ITHREMEEMK LERVSLEKEK QEISANKGIL EVQQLEMKKD IDVLVGLSRK LKDQRLAYIK ERERFIDFVK QQKSCSSCGE GIHVIEFSDL
0701: QALAEAETFE APPLPSVAQE YLKDGLQGSP GRASDELSPG ALDTASMVSA GTMSWFRKCT SKILKFSPSK NIGNVASDCL VDESSLSQKC AGISPNKQSK
0801: EGNPMDLSIS MNVLDDQRVQ QDDGVREVKV GQDNVEDSHH SDMKAGQRRT VKKGRGRTSK TEKAANMTVL GKISKEGENI TNGSLETSVN MNEESQRGSG
0901: LLGGAPRNSR KRSHTSQGTA CEIDGNNSEG QSDSVASIRG KRRQQAAPSV QAHAERRYNL RRPRSAAPAA SYGSLPEPVV KSQEENQNSK ASLQTPQVNN
1001: SEDVIDHPTV SESPFNDAVD NLESSANKVN ELLDDTGLSE EVNVTPKRPS ASSDEEGSDD SDDEEEEIEH PGEVSVGKKI WTFITT
0001: MSTPLKVWQR WSTPTKATNP DSNGSSHGTG LDMVTPVSGR VSEIQFDDPR ILPEKISELE KELFEYQHSM GLLLIEKKEW SSQYEALQQA FEEVNECLKQ
0101: ERNAHLIAIA DVEKREEGLR KALGIEKQCA LDLEKALKEL RAENAEIKFT ADSKLTEANA LVRSVEEKSL EVEAKLRAVD AKLAEVSRKS SDVERKAKEV
0201: EARESSLQRE RFSYIAEREA DEATLSKQRE DLREWERKLQ EGEERVAKSQ MIVKQREDRA NESDKIIKQK GKELEEAQKK IDAANLAVKK LEDDVSSRIK
0301: DLALREQETD VLKKSIETKA RELQALQEKL EAREKMAVQQ LVDEHQAKLD STQREFELEM EQKRKSIDDS LKSKVAEVEK REAEWKHMEE KVAKREQALD
0401: RKLEKHKEKE NDFDLRLKGI SGREKALKSE EKALETEKKK LLEDKEIILN LKALVEKVSG ENQAQLSEIN KEKDELRVTE EERSEYLRLQ TELKEQIEKC
0501: RSQQELLQKE AEDLKAQRES FEKEWEELDE RKAKIGNELK NITDQKEKLE RHIHLEEERL KKEKQAANEN MERELETLEV AKASFAETME YERSMLSKKA
0601: ESERSQLLHD IEMRKRKLES DMQTILEEKE RELQAKKKLF EEEREKELSN INYLRDVARR EMMDMQNERQ RIEKEKLEVD SSKNHLEEQQ TEIRKDVDDL
0701: VALTKKLKEQ REQFISERSR FLSSMESNRN CSRCGELLSE LVLPEIDNLE MPNMSKLANI LDNEAPRQEM RDISPTAAGL GLPVTGGKVS WFRKCTSKML
0801: KLSPIKMTEP SVTWNLADQE PQSTEQANVG GPSTTVQAAT TYSFDVQKAE SETGTKEVEV TNVNSDGDQS DINSKAQEVA ADSLSNLDVD GQSRMKGKGK
0901: ARTRRTRSVK DVVDDAKALY GESINLYEPN DSTENVDDST KASTGETGRS DKAISKNGRK RGRVGSLRTC TTEQDGNESD GKSDSVTGGA HQRKRRQKVA
1001: SEQQGEVVGQ RYNLRRPRRV TGEPALSKKN EDIGGVQQEE GIHCTQATAT ASVGVAVSDN GVSTNVVQHE ATADSEDTDA GSPKRTDESE AMSEDVNKTP
1101: LRADSDGEDD ESDAEHPGKV SIGKKLWTFL TT
0101: ERNAHLIAIA DVEKREEGLR KALGIEKQCA LDLEKALKEL RAENAEIKFT ADSKLTEANA LVRSVEEKSL EVEAKLRAVD AKLAEVSRKS SDVERKAKEV
0201: EARESSLQRE RFSYIAEREA DEATLSKQRE DLREWERKLQ EGEERVAKSQ MIVKQREDRA NESDKIIKQK GKELEEAQKK IDAANLAVKK LEDDVSSRIK
0301: DLALREQETD VLKKSIETKA RELQALQEKL EAREKMAVQQ LVDEHQAKLD STQREFELEM EQKRKSIDDS LKSKVAEVEK REAEWKHMEE KVAKREQALD
0401: RKLEKHKEKE NDFDLRLKGI SGREKALKSE EKALETEKKK LLEDKEIILN LKALVEKVSG ENQAQLSEIN KEKDELRVTE EERSEYLRLQ TELKEQIEKC
0501: RSQQELLQKE AEDLKAQRES FEKEWEELDE RKAKIGNELK NITDQKEKLE RHIHLEEERL KKEKQAANEN MERELETLEV AKASFAETME YERSMLSKKA
0601: ESERSQLLHD IEMRKRKLES DMQTILEEKE RELQAKKKLF EEEREKELSN INYLRDVARR EMMDMQNERQ RIEKEKLEVD SSKNHLEEQQ TEIRKDVDDL
0701: VALTKKLKEQ REQFISERSR FLSSMESNRN CSRCGELLSE LVLPEIDNLE MPNMSKLANI LDNEAPRQEM RDISPTAAGL GLPVTGGKVS WFRKCTSKML
0801: KLSPIKMTEP SVTWNLADQE PQSTEQANVG GPSTTVQAAT TYSFDVQKAE SETGTKEVEV TNVNSDGDQS DINSKAQEVA ADSLSNLDVD GQSRMKGKGK
0901: ARTRRTRSVK DVVDDAKALY GESINLYEPN DSTENVDDST KASTGETGRS DKAISKNGRK RGRVGSLRTC TTEQDGNESD GKSDSVTGGA HQRKRRQKVA
1001: SEQQGEVVGQ RYNLRRPRRV TGEPALSKKN EDIGGVQQEE GIHCTQATAT ASVGVAVSDN GVSTNVVQHE ATADSEDTDA GSPKRTDESE AMSEDVNKTP
1101: LRADSDGEDD ESDAEHPGKV SIGKKLWTFL TT
Arabidopsis Description
CRWN1Protein CROWDED NUCLEI 1 [Source:UniProtKB/Swiss-Prot;Acc:F4HRT5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.