CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12630	Canola	mitochondrion	76.22	53.18
Os02t0710102-01	Rice	nucleus	22.48	41.07
CDX96106	Canola	cytosol	97.72	38.56
GSMUA_Achr9P21820_001	Banana	endoplasmic reticulum, golgi, plasma membrane	24.1	30.96
Bra004210.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	96.09	27.65
CDY01790	Canola	cytosol, mitochondrion, nucleus, plastid	97.39	27.26
CDY12631	Canola	golgi, mitochondrion, nucleus, plastid	73.29	23.22
CDY46040	Canola	cytosol	75.9	21.4
AT1G67230.1	Thale cress	nucleus	78.83	21.38
PGSC0003DMT400026042	Potato	cytosol, mitochondrion, nucleus, plastid	56.68	15.3
KRH01492	Soybean	nucleus	57.33	14.78
Solyc02g089800.2.1	Tomato	nucleus	52.12	14.73
KRH45183	Soybean	nucleus	56.35	14.53
VIT_14s0006g03280.t01	Wine grape	nucleus	58.96	14.38
Solyc03g045050.2.1	Tomato	nucleus	54.07	14.22
CDY45853	Canola	cytosol	43.65	14.02
CDX81542	Canola	nucleus	43.97	13.73
PGSC0003DMT400008676	Potato	cytosol	47.23	13.25
GSMUA_Achr3P28980_001	Banana	mitochondrion	41.69	12.46
KXG30901	Sorghum	mitochondrion, nucleus	45.93	12.2
TraesCS6D01G256200.1	Wheat	nucleus	45.6	12.2
TraesCS6B01G303400.1	Wheat	nucleus	45.28	12.15
HORVU6Hr1G069560.1	Barley	nucleus	45.28	12.13
Zm00001d051600_P004	Maize	nucleus	45.28	11.91
GSMUA_Achr8P14400_001	Banana	cytosol	46.25	11.8
CDY19387	Canola	nucleus	43.97	11.78
CDX98000	Canola	nucleus	44.63	11.74
GSMUA_Achr11P...	Banana	nucleus	46.91	11.12
CDY45628	Canola	nucleus, plastid	32.57	9.97
GSMUA_Achr6P09340_001	Banana	cytosol	44.63	8.58
CDY60978	Canola	nucleus, plastid	31.92	8.05
GSMUA_Achr9P21830_001	Banana	nucleus	6.19	2.7
CDY08750	Canola	nucleus	0.33	0.18
CDY67848	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY67849	EnsemblPlantsGene:GSBRNA2T00066953001	ncoils:Coil	PANTHER:PTHR31908	PANTHER:PTHR31908:SF3	ProteinID:CDY67849
ProteinID:CDY67849.1	SEG:seg	UniParc:UPI0004EEF8AA	UniProt:A0A078JM12	MapMan:20.4.3.1	:

Description

BnaA07g38740DBnaA07g38740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JM12]

Coordinates

chrLK036573:-:6772..8362

Molecular Weight (calculated)

35748.1 Da

IEP (calculated)

5.153

GRAVY (calculated)

-1.062

Length

307 amino acids

Sequence
(BLAST)

001: MSTPLKVWQR WSTPTKATNP DSNGKVSGMV SEIQYEDDPR RLPDRVSELE KELFEYQHNM GLLLLEKKEW SSKFEELQDE FDEANQCLKR ERNAHMVAMA
101: DVEKREEGLR KALGIEKQCA ADLEKALREL RSENAEIKFT ADSKLMEANA LVRSVEEKSL EVEAKLRAVD ARLAEVSRKS SEVERRSKDV EARESSLQRE
201: RFSHITEREA EEASLTKQRE DLREWERKLQ EGEERVAKFQ MMVKQREDRA NESDKIIKQK GKELEEAQKK IDAANFALKK KEDDISSRIK ALALREQETD
301: LQKSESC

Best Arabidopsis Sequence Match ( AT1G13220.1 )
(BLAST)

001: MFTPQRKQWM SPAMTPRSET HKIGGVTNPR NADRKGKAVA FSDDLVIPTL PPPPIGTLTG QGVSRGHTDD MDMGDWRRFR EVGLLNEASM EKKDQEALLE
101: KISTLEKELY GYQHNMGLLL MENKELVSKH EQLNQAFQEA QEILKREQSS HLYALTTVEQ REENLRKALG LEKQCVQELE KALREIQEEN SKIRLSSEAK
201: LVEANALVAS VNGRSSDVEN KIYSAESKLA EATRKSSELK LRLKEVETRE SVLQQERLSF TKERESYEGT FQKQREYLNE WEKKLQGKEE SITEQKRNLN
301: QREEKVNEIE KKLKLKEKEL EEWNRKVDLS MSKSKETEED ITKRLEELTT KEKEAHTLQI TLLAKENELR AFEEKLIARE GVILGYSFCR L

Arabidopsis Description

LINC2nuclear matrix constituent protein-related [Source:TAIR;Acc:AT1G13220]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.