Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22361 | Canola | nucleus | 92.59 | 94.59 |
| Bra033666.1-P | Field mustard | nucleus | 92.06 | 94.05 |
| AT5G43170.1 | Thale cress | nucleus | 70.37 | 68.91 |
| CDY27629 | Canola | nucleus | 73.55 | 60.7 |
| CDX84907 | Canola | nucleus | 73.55 | 60.7 |
| CDY11770 | Canola | nucleus | 73.55 | 59.66 |
| CDX90105 | Canola | nucleus | 73.55 | 59.66 |
| CDY03945 | Canola | nucleus | 72.49 | 59.31 |
| CDX70236 | Canola | nucleus, plastid | 68.25 | 56.58 |
| CDY51312 | Canola | nucleus | 61.38 | 52.73 |
| CDY02102 | Canola | nucleus | 39.68 | 47.47 |
| CDY23027 | Canola | nucleus | 40.74 | 45.29 |
| KRH15443 | Soybean | nucleus | 54.5 | 44.21 |
| KRH05601 | Soybean | nucleus | 56.08 | 44.17 |
| CDX81313 | Canola | nucleus | 42.86 | 43.55 |
| CDY43576 | Canola | nucleus | 43.92 | 39.71 |
| CDX83103 | Canola | nucleus | 46.03 | 39.19 |
| CDX68558 | Canola | nucleus | 46.03 | 39.19 |
| CDY18661 | Canola | nucleus | 42.86 | 39.13 |
| CDX68559 | Canola | nucleus | 46.56 | 39.11 |
| CDY37851 | Canola | nucleus | 44.44 | 39.07 |
| CDX95435 | Canola | nucleus | 50.79 | 36.78 |
| CDY42192 | Canola | nucleus | 51.32 | 36.74 |
| CDX82290 | Canola | nucleus | 51.85 | 36.43 |
| TraesCS4B01G079000.1 | Wheat | nucleus | 42.33 | 36.36 |
| CDY65161 | Canola | nucleus | 51.32 | 36.19 |
| CDX99202 | Canola | nucleus | 50.79 | 36.09 |
| CDY46162 | Canola | nucleus | 50.79 | 35.96 |
| TraesCS4A01G236000.1 | Wheat | nucleus | 38.62 | 35.78 |
| TraesCS4D01G077900.1 | Wheat | nucleus | 41.27 | 35.62 |
| HORVU4Hr1G013460.1 | Barley | nucleus | 40.74 | 35.16 |
| CDY08718 | Canola | nucleus | 44.44 | 34.85 |
| TraesCS5A01G070600.1 | Wheat | nucleus | 44.44 | 34.85 |
| TraesCS5D01G082700.1 | Wheat | nucleus | 43.39 | 34.45 |
| PGSC0003DMT400084751 | Potato | nucleus | 47.62 | 34.35 |
| TraesCS5B01G076400.1 | Wheat | nucleus | 43.39 | 34.31 |
| CDY36493 | Canola | nucleus | 43.39 | 34.02 |
| GSMUA_Achr5P08730_001 | Banana | nucleus | 44.44 | 34.01 |
| Os03t0610400-01 | Rice | nucleus | 42.33 | 33.61 |
| Os12t0583700-00 | Rice | nucleus | 43.39 | 33.2 |
| Solyc01g107170.2.1 | Tomato | nucleus | 47.62 | 29.03 |
| GSMUA_Achr6P24730_001 | Banana | nucleus | 42.33 | 28.99 |
| Zm00001d030858_P001 | Maize | nucleus | 42.33 | 28.88 |
| EES16240 | Sorghum | nucleus | 43.92 | 28.62 |
| CDX89061 | Canola | nucleus | 33.33 | 23.95 |
| CDX95629 | Canola | nucleus | 34.39 | 23.72 |
| CDY71582 | Canola | nucleus | 33.33 | 23.16 |
| CDY41155 | Canola | nucleus | 29.63 | 22.58 |
| CDY27394 | Canola | nucleus | 33.86 | 22.46 |
| CDY37027 | Canola | nucleus | 33.33 | 22.42 |
| CDX83402 | Canola | nucleus | 34.92 | 22.15 |
| CDX67836 | Canola | nucleus | 34.39 | 22.03 |
| CDX71799 | Canola | nucleus | 29.63 | 21.54 |
| CDY48363 | Canola | nucleus | 31.75 | 20.91 |
| CDY70162 | Canola | nucleus | 22.22 | 19.63 |
| CDY42873 | Canola | nucleus | 24.87 | 18.88 |
| CDY02142 | Canola | nucleus | 25.93 | 18.01 |
| CDY23066 | Canola | plastid | 25.93 | 17.82 |
| CDY50966 | Canola | nucleus | 34.39 | 17.43 |
| CDY40527 | Canola | nucleus | 17.46 | 17.01 |
| CDY32274 | Canola | nucleus | 17.46 | 16.75 |
| CDY09671 | Canola | nucleus | 16.93 | 16.0 |
| CDY50848 | Canola | nucleus | 17.46 | 15.79 |
| CDY53641 | Canola | nucleus | 17.46 | 15.79 |
| CDY28108 | Canola | nucleus | 37.04 | 15.52 |
| CDY69391 | Canola | nucleus | 17.46 | 15.42 |
Protein Annotations
| EnsemblPlants:CDY30794 | EnsemblPlantsGene:GSBRNA2T00046227001 | Gene3D:3.30.160.60 | GO:A0A078H020 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF263 |
| PFAM:PF13912 | PFscan:PS50157 | ProteinID:CDY30794 | ProteinID:CDY30794.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EDEE62 | UniProt:A0A078H020 | MapMan:15.5.15 | : |
Description
BnaC07g16940DBnaC07g16940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H020]
Coordinates
chrLK032260:-:463327..463896
Molecular Weight (calculated)
20781.5 Da
IEP (calculated)
8.826
GRAVY (calculated)
-0.631
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEALNSPR IASPVPTLFE EHWTKGKRSK RSRSDHPHRL TEEEYLAFCL MLLARDGDRH HVEEEKTVYK CGVCDKVFLS YQALGGHKAS HRNFSSGGDV
101: KPTTPAAVKS HVCSICHKSF TTGQALGGHK RCHYDGSSNV VSNSEGVGST SHVSGNSRRG FDLNITPINE LSPDDEVKSP LPSKKLRLT
101: KPTTPAAVKS HVCSICHKSF TTGQALGGHK RCHYDGSSNV VSNSEGVGST SHVSGNSRRG FDLNITPINE LSPDDEVKSP LPSKKLRLT
001: MALEALNSPR LVEDPLRFNG VEQWTKCKKR SKRSRSDLHH NHRLTEEEYL AFCLMLLARD GGDLDSVTVA EKPSYKCGVC YKTFSSYQAL GGHKASHRSL
101: YGGGENDKST PSTAVKSHVC SVCGKSFATG QALGGHKRCH YDGGVSNSEG VGSTSHVSSS SHRGFDLNII PVQGFSPDDE VMSPMATKKP RLK
101: YGGGENDKST PSTAVKSHVC SVCGKSFATG QALGGHKRCH YDGGVSNSEG VGSTSHVSSS SHRGFDLNII PVQGFSPDDE VMSPMATKKP RLK
Arabidopsis Description
AZF3Zinc finger protein AZF3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSW0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.