Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60580.1 | CDX72645 | AT4G37650.1 | 21245844 |
| AT3G60580.1 | CDY44032 | AT4G37650.1 | 21245844 |
| AT3G60580.1 | CDY50264 | AT4G37650.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89061 | Canola | nucleus | 78.05 | 85.17 |
| Bra014483.1-P | Field mustard | nucleus | 74.91 | 84.31 |
| CDY41155 | Canola | nucleus | 65.16 | 75.4 |
| CDX71799 | Canola | nucleus | 67.25 | 74.23 |
| CDY71582 | Canola | nucleus | 69.69 | 73.53 |
| AT3G60580.1 | Thale cress | nucleus | 73.17 | 72.92 |
| CDX67836 | Canola | nucleus | 71.08 | 69.15 |
| CDY37027 | Canola | nucleus | 56.79 | 58.01 |
| CDY27394 | Canola | nucleus | 57.49 | 57.89 |
| CDX95629 | Canola | nucleus | 52.26 | 54.74 |
| CDX83402 | Canola | nucleus | 54.7 | 52.68 |
| PGSC0003DMT400053945 | Potato | cytosol | 25.09 | 47.06 |
| PGSC0003DMT400066939 | Potato | nucleus | 40.77 | 35.45 |
| Solyc01g090840.2.1 | Tomato | nucleus | 39.72 | 35.29 |
| CDY02102 | Canola | nucleus | 18.82 | 34.18 |
| VIT_15s0021g02720.t01 | Wine grape | nucleus | 42.16 | 33.7 |
| CDY22361 | Canola | nucleus | 21.25 | 32.97 |
| CDY09671 | Canola | nucleus | 22.65 | 32.5 |
| KRH76140 | Soybean | nucleus | 41.12 | 32.33 |
| KRH65408 | Soybean | nucleus | 43.21 | 31.96 |
| CDY69391 | Canola | nucleus | 23.69 | 31.78 |
| CDY23027 | Canola | nucleus | 18.82 | 31.76 |
| CDY30794 | Canola | nucleus | 20.91 | 31.75 |
| CDY53641 | Canola | nucleus | 23.0 | 31.58 |
| CDY50848 | Canola | nucleus | 23.0 | 31.58 |
| CDY40527 | Canola | nucleus | 21.25 | 31.44 |
| CDY32274 | Canola | nucleus | 21.25 | 30.96 |
| KRH75355 | Soybean | nucleus | 41.81 | 30.85 |
| CDX81313 | Canola | nucleus | 19.51 | 30.11 |
| CDY43576 | Canola | nucleus | 20.56 | 28.23 |
| CDY37851 | Canola | nucleus | 20.91 | 27.91 |
| GSMUA_Achr4P03310_001 | Banana | nucleus | 24.74 | 27.52 |
| GSMUA_Achr6P34890_001 | Banana | nucleus, plastid | 25.78 | 27.31 |
| CDY03945 | Canola | nucleus | 21.95 | 27.27 |
| GSMUA_Achr9P09370_001 | Banana | nucleus | 26.13 | 27.17 |
| CDY18661 | Canola | nucleus | 19.51 | 27.05 |
| CDY51312 | Canola | nucleus | 20.56 | 26.82 |
| CDX83103 | Canola | nucleus | 20.56 | 26.58 |
| CDX95435 | Canola | nucleus | 24.04 | 26.44 |
| CDX70236 | Canola | nucleus, plastid | 20.91 | 26.32 |
| CDX68559 | Canola | nucleus | 20.56 | 26.22 |
| CDY27629 | Canola | nucleus | 20.91 | 26.2 |
| CDX84907 | Canola | nucleus | 20.91 | 26.2 |
| CDY11770 | Canola | nucleus | 21.25 | 26.18 |
| CDX90105 | Canola | nucleus | 21.25 | 26.18 |
| CDY42192 | Canola | nucleus | 24.04 | 26.14 |
| CDX68558 | Canola | nucleus | 20.21 | 26.13 |
| CDY65161 | Canola | nucleus | 24.04 | 25.75 |
| CDX82290 | Canola | nucleus | 24.04 | 25.65 |
| CDX99202 | Canola | nucleus | 23.69 | 25.56 |
| GSMUA_Achr4P32760_001 | Banana | nucleus | 28.92 | 25.38 |
| CDY46162 | Canola | nucleus | 23.34 | 25.09 |
| CDY36493 | Canola | nucleus | 20.91 | 24.9 |
| CDY23066 | Canola | plastid | 23.69 | 24.73 |
| CDY02142 | Canola | nucleus | 23.34 | 24.63 |
| CDY08718 | Canola | nucleus | 20.21 | 24.07 |
| CDY42873 | Canola | nucleus | 20.56 | 23.69 |
| CDY70162 | Canola | nucleus | 16.72 | 22.43 |
| CDY50966 | Canola | nucleus | 19.16 | 14.75 |
| CDY28108 | Canola | nucleus | 20.21 | 12.86 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:A0A078IGT5 | UniProt:A0A078IGT5 | EnsemblPlants:CDY48363 | ProteinID:CDY48363 |
| ProteinID:CDY48363.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00089351001 | InterPro:IPR013087 |
| PFAM:PF13894 | PFAM:PF13912 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF304 |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EDC12A | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg |
Description
BnaC04g22120DBnaC04g22120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGT5]
Coordinates
chrLK032768:+:10283..11176
Molecular Weight (calculated)
32887.6 Da
IEP (calculated)
9.270
GRAVY (calculated)
-1.072
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MESYKCKFCF KSFVNERALD GHVRSHMPTL PNFCIEEEEE KVRPSQLSGD TESDVSSSSP EEERHRTMDD DQKFAFTGSQ RNIINLTRKR SKRTRKLDSF
101: ATKKMKTSQL GYKTEPEPHH SSASDTTTDE DLAFCLMMLS RDKWKKKNKT SSSHKELVEE IDDNSSKMNR ATTTKGRFTC ETCGKVFKSY QALGGHRASH
201: KKNRVSNKTE QRSETEYDNV VVAPEKRIHE CPICLRVFAS GQALGGHKRS HGLGNLSVNH HQVHRTESVK QRMLDLNFPA PTEEDKR
101: ATKKMKTSQL GYKTEPEPHH SSASDTTTDE DLAFCLMMLS RDKWKKKNKT SSSHKELVEE IDDNSSKMNR ATTTKGRFTC ETCGKVFKSY QALGGHRASH
201: KKNRVSNKTE QRSETEYDNV VVAPEKRIHE CPICLRVFAS GQALGGHKRS HGLGNLSVNH HQVHRTESVK QRMLDLNFPA PTEEDKR
001: MESYKCRVCF KSFVNGKALG GHMRSHMSNS HEEEQRPSQL SYETESDVSS SDPKFAFTSS VLLEDGESES ESSRNVINLT RKRSKRTRKL DSFVTKKVKT
101: SQLGYKPESD QEPPHSSASD TTTEEDLAFC LMMLSRDKWK KNKSNKEVVE EIETEEESEG YNKINRATTK GRYKCETCGK VFKSYQALGG HRASHKKNRV
201: SNNKTEQRSE TEYDNVVVVA KRIHECPICL RVFASGQALG GHKRSHGVGN LSVNQQRRVH RNESVKQRMI DLNLPAPTEE DEVSVVFQ
101: SQLGYKPESD QEPPHSSASD TTTEEDLAFC LMMLSRDKWK KNKSNKEVVE EIETEEESEG YNKINRATTK GRYKCETCGK VFKSYQALGG HRASHKKNRV
201: SNNKTEQRSE TEYDNVVVVA KRIHECPICL RVFASGQALG GHKRSHGVGN LSVNQQRRVH RNESVKQRMI DLNLPAPTEE DEVSVVFQ
Arabidopsis Description
ZAT9Zinc finger protein ZAT9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M202]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.