CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04424
KRH28353
KRH58109
KRH77129

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60580.1	KRH04424	AT4G37650.1	21245844
AT3G60580.1	KRH28353	AT4G37650.1	21245844
AT3G60580.1	KRH58109	AT4G37650.1	21245844
AT3G60580.1	KRH77129	AT4G37650.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65408	Soybean	nucleus	86.03	80.93
KRH75355	Soybean	nucleus	60.27	56.56
VIT_15s0021g02720.t01	Wine grape	nucleus	54.52	55.43
KRH57408	Soybean	nucleus	37.53	51.7
PGSC0003DMT400053945	Potato	cytosol	21.64	51.63
Bra040325.1-P	Field mustard	nucleus	39.73	51.6
CDY37027	Canola	nucleus	39.73	51.6
CDY27394	Canola	nucleus	39.73	50.88
KRH28087	Soybean	nucleus	39.45	50.0
CDY41155	Canola	nucleus	33.7	49.6
Solyc01g090840.2.1	Tomato	nucleus	43.84	49.54
KRH77360	Soybean	nucleus	40.27	49.33
PGSC0003DMT400066939	Potato	nucleus	44.38	49.09
KRH04135	Soybean	nucleus	35.34	49.05
AT3G60580.1	Thale cress	nucleus	38.63	48.96
CDX95629	Canola	nucleus	35.89	47.81
CDX71799	Canola	nucleus	33.97	47.69
CDY71582	Canola	nucleus	34.79	46.69
CDX83402	Canola	nucleus	37.81	46.31
CDX89061	Canola	nucleus	33.15	46.01
Bra003422.1-P	Field mustard	nucleus	37.26	45.79
Bra007545.1-P	Field mustard	nucleus	37.26	45.79
CDX67836	Canola	nucleus	36.99	45.76
Bra000372.1-P	Field mustard	mitochondrion, nucleus	37.53	44.19
AT2G45120.1	Thale cress	nucleus	37.53	43.63
CDY48363	Canola	nucleus	32.33	41.12
Bra014483.1-P	Field mustard	nucleus	28.22	40.39
GSMUA_Achr4P03310_001	Banana	nucleus	24.38	34.5
KRH39952	Soybean	nucleus	28.77	34.31
GSMUA_Achr6P34890_001	Banana	nucleus, plastid	24.11	32.47
GSMUA_Achr4P32760_001	Banana	nucleus	27.95	31.19
GSMUA_Achr9P09370_001	Banana	nucleus	23.01	30.43
KRH52082	Soybean	nucleus	18.36	28.76
KRH05601	Soybean	nucleus	18.36	27.92
KRH15443	Soybean	nucleus	17.81	27.9
KRH61394	Soybean	nucleus	17.81	27.9
KRG91102	Soybean	nucleus	18.63	26.15
KRH35675	Soybean	nucleus	17.81	25.29

Protein Annotations

EntrezGene:100776462	MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:ACUP02000571	EnsemblPlantsGene:GLYMA_01G134200	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:IPR013087	UniProt:K7K3N0	EnsemblPlants:KRH76140	ProteinID:KRH76140	ProteinID:KRH76140.1	PFAM:PF13912
ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF304	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI00023376D5	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:45524253..45525989

Molecular Weight (calculated)

40462.4 Da

IEP (calculated)

4.822

GRAVY (calculated)

-0.885

Length

365 amino acids

Sequence
(BLAST)

001: MEKHKCKLCL RSFANGRALG GHMRSHMLNL PVPPKQSEFV PIQLSFEADS SPSQSSSSFY GLRENPKKSF RFADPEFAFA AADTGSVILQ DRESETESSR
101: NPTRTRSKRA WQLGGDGGGG GGGSGESEKK IMKVCKISKT NESASSVSDT TREEDVAFCL MMLSRDKWKE ENINNLLYDH DQDDDEDEED DEEDENNEDD
201: DGYESEEKSL KKSNNKVRGR YKCETCEKVF RSYQALGGHR ASHKKIKLNN NNNNNNNNEG ELEVQHVVVE KKIHECPVCF RVFASGQALG GHKRTHVIGS
301: STAATTVSVR SSVATVSVRT ASTTRVGDSL IDLNLPAPVD DDEEEEEDVS QFDDSAVSDA EFVKL

Best Arabidopsis Sequence Match ( AT3G60580.1 )
(BLAST)

001: MESYKCRVCF KSFVNGKALG GHMRSHMSNS HEEEQRPSQL SYETESDVSS SDPKFAFTSS VLLEDGESES ESSRNVINLT RKRSKRTRKL DSFVTKKVKT
101: SQLGYKPESD QEPPHSSASD TTTEEDLAFC LMMLSRDKWK KNKSNKEVVE EIETEEESEG YNKINRATTK GRYKCETCGK VFKSYQALGG HRASHKKNRV
201: SNNKTEQRSE TEYDNVVVVA KRIHECPICL RVFASGQALG GHKRSHGVGN LSVNQQRRVH RNESVKQRMI DLNLPAPTEE DEVSVVFQ

Arabidopsis Description

ZAT9Zinc finger protein ZAT9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M202]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.