CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28087	Soybean	nucleus	87.25	90.28
KRH57408	Soybean	nucleus	59.4	66.79
KRH04135	Soybean	nucleus	57.05	64.64
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	35.57	46.09
PGSC0003DMT400030986	Potato	nucleus	46.64	45.57
VIT_00s0229g00050.t01	Wine grape	nucleus	48.99	45.2
GSMUA_Achr2P18480_001	Banana	nucleus	36.91	44.9
Solyc06g060740.1.1	Tomato	nucleus	45.97	44.77
GSMUA_Achr4P12160_001	Banana	mitochondrion	29.19	44.62
GSMUA_Achr4P26920_001	Banana	mitochondrion	40.6	44.32
GSMUA_Achr5P15450_001	Banana	mitochondrion	39.26	42.24
PGSC0003DMT400012154	Potato	nucleus	41.95	41.95
CDY40527	Canola	nucleus	27.18	41.75
CDY09671	Canola	nucleus	27.85	41.5
CDY32274	Canola	nucleus	27.18	41.12
KRH76140	Soybean	nucleus	49.33	40.27
Solyc08g078590.1.1	Tomato	nucleus	37.92	40.21
AT4G16610.1	Thale cress	nucleus	27.52	40.2
CDY53641	Canola	nucleus	27.85	39.71
CDY50848	Canola	nucleus	27.85	39.71
Bra040741.1-P	Field mustard	nucleus	27.85	39.71
Bra012701.1-P	Field mustard	nucleus, plastid	27.85	38.78
CDY69391	Canola	nucleus	27.85	38.78
KRH75355	Soybean	nucleus	48.99	37.53
GSMUA_Achr1P01550_001	Banana	nucleus	36.91	37.41
KRH65408	Soybean	nucleus	48.66	37.37
TraesCS2A01G413100.1	Wheat	nucleus	36.24	36.73
Zm00001d002731_P001	Maize	nucleus	37.58	36.48
HORVU2Hr1G097410.1	Barley	nucleus	35.91	36.39
GSMUA_Achr5P13370_001	Banana	mitochondrion, nucleus	35.91	36.15
GSMUA_Achr1P24150_001	Banana	mitochondrion	31.54	35.34
Zm00001d047102_P001	Maize	nucleus	39.93	35.0
TraesCS2B01G431800.1	Wheat	nucleus	36.24	34.95
TraesCS2D01G410300.1	Wheat	nucleus	35.91	34.85
HORVU6Hr1G063280.1	Barley	mitochondrion, nucleus, plastid	36.58	34.82
HORVU0Hr1G030680.1	Barley	nucleus	36.58	34.82
TraesCS6B01G276100.1	Wheat	nucleus	36.58	34.71
TraesCS6A01G248700.1	Wheat	nucleus	36.58	34.71
TraesCS1A01G211800.1	Wheat	nucleus	38.59	34.43
HORVU2Hr1G097440.1	Barley	mitochondrion	25.17	34.4
TraesCS6D01G230800.1	Wheat	nucleus	36.24	34.29
EES11238	Sorghum	mitochondrion	38.26	34.23
GSMUA_Achr4P05560_001	Banana	nucleus	26.17	33.91
TraesCS1D01G214900.1	Wheat	nucleus	38.59	33.72
TraesCS1B01G225500.1	Wheat	nucleus	38.26	33.43
KRH39952	Soybean	nucleus	34.23	33.33
HORVU1Hr1G054170.1	Barley	nucleus	38.26	33.24
Zm00001d029917_P001	Maize	nucleus	37.92	33.14
Os10t0555300-01	Rice	mitochondrion, nucleus	39.6	32.87
OQU85696	Sorghum	mitochondrion	36.91	32.64
GSMUA_AchrUn_...	Banana	nucleus	23.49	30.7
Zm00001d017497_P001	Maize	mitochondrion	32.21	30.38
Zm00001d051371_P001	Maize	mitochondrion	34.23	30.09
EER91950	Sorghum	mitochondrion, plastid	38.93	30.05
Os02t0659500-01	Rice	mitochondrion	34.23	29.91
KRH52082	Soybean	nucleus	19.8	25.32
GSMUA_AchrUn_...	Banana	mitochondrion	31.21	25.2
KRH61394	Soybean	nucleus	19.13	24.46
KRH05601	Soybean	nucleus	19.46	24.17
KRH15443	Soybean	nucleus	18.79	24.03
KRG91102	Soybean	nucleus	19.46	22.31
KRH35675	Soybean	nucleus	18.79	21.79
Bra038491.1-P	Field mustard	nucleus	26.51	20.31
GSMUA_Achr7P04600_001	Banana	nucleus	22.82	18.84

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:ACUP02000669	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G209100	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
UniProt:I1J9V7	InterPro:IPR013087	EnsemblPlants:KRH77360	ProteinID:KRH77360	ProteinID:KRH77360.1	PFAM:PF13912
ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF185	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI00023373FE	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:54068754..54070284

Molecular Weight (calculated)

33206.6 Da

IEP (calculated)

6.186

GRAVY (calculated)

-0.902

Length

298 amino acids

Sequence
(BLAST)

001: MERYKCKLCS RTFSNGRALG GHMKAHLATL PLPPQNQQPP LSPSAAASFS SNSSSEQEQA THDEKSLIYG LRENPKKCFR LADPEFDTGS VVQDRESETE
101: SKNPTRRRSK RTRRPVNLEQ KKPKLSFMES PEPVSSVSDT SPEEDVAMCL MMLSRDRWSK NNNINVVNVN DEDVVEEEEE EEEEEEEGGR SVLEIKLRRV
201: RGKHQCQSCG KTFRSSRALG SHRSICEGSG NDSKIFQCPF CSKVFGSGQA LGGHKRSHLM PSSSTTANND SVRLKESFID LNLPAPPEDD DLSVVSDA

Best Arabidopsis Sequence Match ( AT4G16610.1 )
(BLAST)

001: MQNKHKCKLC SKSFCNGRAL GGHMKSHLVS SQSSARKKLG DSVYSSSSSS SDGKALAYGL RENPRKSFRV FNPDPESSTI YNSETETEPE SGDPVKKRVR
101: GDVSKKKKKK AKSKRVFENS KKQKTIHESP EPASSVSDGS PEQDLAMCLM MLSRDSRELE IKLKKPEEER KPEKRHFPEL RRCMIDLNLP PPQEAEAVTV
201: VSAI

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:O23504]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.