Factsheet for Bra012701.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69391	Canola	nucleus	97.2	97.2
Bra040741.1-P	Field mustard	nucleus	84.11	86.12
AT4G16610.1	Thale cress	nucleus	77.57	81.37
Bra038491.1-P	Field mustard	nucleus	69.63	38.3
KRH57408	Soybean	nucleus	42.06	33.96
KRH04135	Soybean	nucleus	40.19	32.7
KRH28087	Soybean	nucleus	38.78	28.82
GSMUA_Achr4P26920_001	Banana	mitochondrion	36.45	28.57
VIT_00s0229g00050.t01	Wine grape	nucleus	42.99	28.48
KRH77360	Soybean	nucleus	38.78	27.85
GSMUA_Achr2P18480_001	Banana	nucleus	31.78	27.76
HORVU2Hr1G097440.1	Barley	mitochondrion	27.57	27.06
Bra007545.1-P	Field mustard	nucleus	37.38	26.94
Bra003422.1-P	Field mustard	nucleus	36.92	26.6
Bra040325.1-P	Field mustard	nucleus	34.58	26.33
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	28.04	26.09
GSMUA_Achr5P15450_001	Banana	mitochondrion	32.71	25.27
PGSC0003DMT400030986	Potato	nucleus	35.51	24.92
Solyc06g060740.1.1	Tomato	nucleus	35.51	24.84
HORVU2Hr1G097410.1	Barley	nucleus	33.64	24.49
PGSC0003DMT400012154	Potato	nucleus	33.64	24.16
HORVU0Hr1G030680.1	Barley	nucleus	35.05	23.96
HORVU6Hr1G063280.1	Barley	mitochondrion, nucleus, plastid	35.05	23.96
TraesCS6A01G248700.1	Wheat	nucleus	35.05	23.89
TraesCS6B01G276100.1	Wheat	nucleus	35.05	23.89
TraesCS2A01G413100.1	Wheat	nucleus	32.71	23.81
GSMUA_Achr4P12160_001	Banana	mitochondrion	21.5	23.59
TraesCS6D01G230800.1	Wheat	nucleus	34.58	23.49
Zm00001d002731_P001	Maize	nucleus	33.18	23.13
GSMUA_Achr5P13370_001	Banana	mitochondrion, nucleus	31.78	22.97
TraesCS2D01G410300.1	Wheat	nucleus	32.71	22.8
TraesCS2B01G431800.1	Wheat	nucleus	32.71	22.65
GSMUA_Achr1P01550_001	Banana	nucleus	30.84	22.45
Solyc08g078590.1.1	Tomato	nucleus	29.44	22.42
GSMUA_AchrUn_...	Banana	nucleus	23.83	22.37
Bra000372.1-P	Field mustard	mitochondrion, nucleus	32.24	22.26
OQU85696	Sorghum	mitochondrion	35.05	22.26
Bra014483.1-P	Field mustard	nucleus	26.17	21.96
EES11238	Sorghum	mitochondrion	34.11	21.92
GSMUA_Achr1P24150_001	Banana	mitochondrion	27.1	21.8
TraesCS1A01G211800.1	Wheat	nucleus	33.64	21.56
Zm00001d017497_P001	Maize	mitochondrion	31.78	21.52
Os10t0555300-01	Rice	mitochondrion, nucleus	35.05	20.89
TraesCS1D01G214900.1	Wheat	nucleus	33.18	20.82
TraesCS1B01G225500.1	Wheat	nucleus	33.18	20.82
HORVU1Hr1G054170.1	Barley	nucleus	33.18	20.7
Zm00001d051371_P001	Maize	mitochondrion	32.24	20.35
Zm00001d047102_P001	Maize	nucleus	32.24	20.29
Zm00001d029917_P001	Maize	nucleus	31.78	19.94
Os02t0659500-01	Rice	mitochondrion	31.31	19.65
GSMUA_Achr4P05560_001	Banana	nucleus	20.09	18.7
Bra033666.1-P	Field mustard	nucleus	15.42	17.84
EER91950	Sorghum	mitochondrion, plastid	31.31	17.36
Bra012914.1-P	Field mustard	nucleus	15.42	15.49
Bra029985.1-P	Field mustard	nucleus	14.49	14.03
GSMUA_AchrUn_...	Banana	mitochondrion	23.83	13.82
Bra010922.1-P	Field mustard	nucleus	14.95	13.73
Bra009464.1-P	Field mustard	plastid	14.49	13.6
Bra012953.1-P	Field mustard	plastid	17.29	13.45
GSMUA_Achr7P04600_001	Banana	nucleus	22.43	13.3
Bra031834.1-P	Field mustard	nucleus	14.49	13.19
Bra001752.1-P	Field mustard	nucleus	16.36	13.11
Bra032845.1-P	Field mustard	nucleus	14.02	13.1
Bra037845.1-P	Field mustard	nucleus	14.02	12.99
Bra022436.1-P	Field mustard	nucleus	15.89	12.73
Bra038219.1-P	Field mustard	nucleus	15.42	12.5
Bra024448.1-P	Field mustard	nucleus	14.02	12.45
Bra018817.1-P	Field mustard	nucleus	14.95	8.58
Bra029315.1-P	Field mustard	nucleus	8.41	7.73

Protein Annotations

EnsemblPlants:Bra012701.1	EnsemblPlants:Bra012701.1-P	EnsemblPlantsGene:Bra012701	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF185	PFAM:PF13912	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	UniParc:UPI0002540922	UniProt:M4D891	MapMan:35.2	:

Description

AT4G16610 (E=7e-040) | zinc finger (C2H2 type) family protein

Coordinates

chrA03:-:22662203..22662847

Molecular Weight (calculated)

23834.4 Da

IEP (calculated)

10.215

GRAVY (calculated)

-0.964

Length

214 amino acids

Sequence
(BLAST)

001: MQKHKCKLCS KSFCNGRALG GHMKSHLVSS HTPTRQKLLG DSVYSSSSSS DGKTLAYGLR ENPRKSCRVF NPDPESSIVY NSETETEPES VDPVRKQGRA
101: DVSKKNKKKT RSKKRVFENS SESGKKQTKR SKSNSNESPE PASSVSDGSP EQDLAMCLMM LSRDSREVKL KKPIIKAEEM KPEKRHVPEL RRCMLDLNLP
201: PPQESDVVAV VSAI

Best Arabidopsis Sequence Match ( AT4G16610.1 )
(BLAST)

001: MQNKHKCKLC SKSFCNGRAL GGHMKSHLVS SQSSARKKLG DSVYSSSSSS SDGKALAYGL RENPRKSFRV FNPDPESSTI YNSETETEPE SGDPVKKRVR
101: GDVSKKKKKK AKSKRVFENS KKQKTIHESP EPASSVSDGS PEQDLAMCLM MLSRDSRELE IKLKKPEEER KPEKRHFPEL RRCMIDLNLP PPQEAEAVTV
201: VSAI

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:O23504]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.