CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77360	Soybean	nucleus	90.28	87.25
KRH57408	Soybean	nucleus	60.76	66.04
KRH04135	Soybean	nucleus	58.33	63.88
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	37.15	46.52
GSMUA_Achr2P18480_001	Banana	nucleus	38.19	44.9
GSMUA_Achr4P12160_001	Banana	mitochondrion	30.21	44.62
PGSC0003DMT400030986	Potato	nucleus	46.88	44.26
Solyc06g060740.1.1	Tomato	nucleus	46.53	43.79
VIT_00s0229g00050.t01	Wine grape	nucleus	48.96	43.65
GSMUA_Achr4P26920_001	Banana	mitochondrion	40.97	43.22
CDY40527	Canola	nucleus	28.82	42.78
CDY32274	Canola	nucleus	28.82	42.13
CDY09671	Canola	nucleus	29.17	42.0
PGSC0003DMT400012154	Potato	nucleus	43.06	41.61
GSMUA_Achr5P15450_001	Banana	mitochondrion	39.93	41.52
AT4G16610.1	Thale cress	nucleus	28.82	40.69
Solyc08g078590.1.1	Tomato	nucleus	39.58	40.57
CDY50848	Canola	nucleus	29.17	40.19
CDY53641	Canola	nucleus	29.17	40.19
Bra040741.1-P	Field mustard	nucleus	29.17	40.19
KRH76140	Soybean	nucleus	50.0	39.45
CDY69391	Canola	nucleus	29.17	39.25
Bra012701.1-P	Field mustard	nucleus, plastid	28.82	38.78
KRH65408	Soybean	nucleus	50.0	37.11
GSMUA_Achr1P01550_001	Banana	nucleus	37.85	37.07
KRH75355	Soybean	nucleus	50.0	37.02
GSMUA_Achr5P13370_001	Banana	mitochondrion, nucleus	37.5	36.49
Zm00001d002731_P001	Maize	nucleus	38.89	36.48
TraesCS2A01G413100.1	Wheat	nucleus	37.15	36.39
HORVU2Hr1G097410.1	Barley	nucleus	36.81	36.05
GSMUA_Achr1P24150_001	Banana	mitochondrion	32.99	35.71
Zm00001d047102_P001	Maize	nucleus	42.01	35.59
TraesCS1A01G211800.1	Wheat	nucleus	40.28	34.73
TraesCS2B01G431800.1	Wheat	nucleus	37.15	34.63
TraesCS2D01G410300.1	Wheat	nucleus	36.81	34.53
GSMUA_Achr4P05560_001	Banana	nucleus	27.43	34.35
EES11238	Sorghum	mitochondrion	39.58	34.23
HORVU6Hr1G063280.1	Barley	mitochondrion, nucleus, plastid	37.15	34.19
HORVU0Hr1G030680.1	Barley	nucleus	37.15	34.19
TraesCS6B01G276100.1	Wheat	nucleus	37.15	34.08
TraesCS6A01G248700.1	Wheat	nucleus	37.15	34.08
TraesCS1D01G214900.1	Wheat	nucleus	40.28	34.02
HORVU2Hr1G097440.1	Barley	mitochondrion	25.69	33.95
TraesCS1B01G225500.1	Wheat	nucleus	39.93	33.72
TraesCS6D01G230800.1	Wheat	nucleus	36.81	33.65
HORVU1Hr1G054170.1	Barley	nucleus	39.93	33.53
Zm00001d029917_P001	Maize	nucleus	39.24	33.14
KRH39952	Soybean	nucleus	35.07	33.01
OQU85696	Sorghum	mitochondrion	38.54	32.94
Os10t0555300-01	Rice	mitochondrion, nucleus	40.97	32.87
GSMUA_AchrUn_...	Banana	nucleus	24.65	31.14
Zm00001d051371_P001	Maize	mitochondrion	35.76	30.38
EER91950	Sorghum	mitochondrion, plastid	40.62	30.31
Zm00001d017497_P001	Maize	mitochondrion	32.99	30.06
Os02t0659500-01	Rice	mitochondrion	34.72	29.33
KRH52082	Soybean	nucleus	21.53	26.61
KRH61394	Soybean	nucleus	20.83	25.75
GSMUA_AchrUn_...	Banana	mitochondrion	32.99	25.75
KRH15443	Soybean	nucleus	20.49	25.32
KRH05601	Soybean	nucleus	20.83	25.0
KRG91102	Soybean	nucleus	20.49	22.69
KRH35675	Soybean	nucleus	19.79	22.18
Bra038491.1-P	Field mustard	nucleus	28.12	20.82
GSMUA_Achr7P04600_001	Banana	nucleus	23.61	18.84

Protein Annotations

EntrezGene:100811637	MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:ACUP02006741	EnsemblPlantsGene:GLYMA_11G033100	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
UniProt:I1LGQ4	InterPro:IPR013087	EnsemblPlants:KRH28087	ProteinID:KRH28087	ProteinID:KRH28087.1	PFAM:PF13912
ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF185	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI000233CB5E	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:-:2419796..2420662

Molecular Weight (calculated)

31839.3 Da

IEP (calculated)

8.339

GRAVY (calculated)

-0.767

Length

288 amino acids

Sequence
(BLAST)

001: MERHKCKLCS RTFSNGRALG GHMKAHLATL PLPPKPPLSP SAASFSSNSS SEEATHDEKS LIYGLRENPK KCFRLADPEF NMASVVQDRE SETESKNPTR
101: RRSERTRRTV NSELKKAKLS FMESPEPVSS VSDTSPEEDV AMCLMMLSRD RWSKNNNNNI IIINNVVSND DVVEEEEEGG RSVEIKLRRV RGKHKCQSCG
201: KTFRSSRALG GHRSICEGSG NDSKTFQCPF CSKVFGSGQA LGGHKRSHLM PSSSSTANND SFRLKESFID LNLPAPAEDD DLSVVSDA

Best Arabidopsis Sequence Match ( AT1G02030.1 )
(BLAST)

001: MEERHKCKLC WKSFANGRAL GGHMRSHMLI HPLPSQPESY SSSMADPGFV LQDRESETES SKKPSRKRSR LNRRSISSLR HQQSNEEGKS ETARAADIKI
101: GVQELSESCT EQEPMSSVSD AATTEEDVAL SLMLLSRDKW EKEEEESDEE RWKKKRNKWF ECETCEKVFK SYQALGGHRA SHKKKIAETD QLGSDELKKK
201: KKKSTSSHHE CPICAKVFTS GQALGGHKRS HASANNEFTR RSGIIISLID LNLPAPSEEE EMASSVF

Arabidopsis Description

ZAT1Zinc finger protein ZAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q39092]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.