Factsheet for Bra038491.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32274	Canola	nucleus	45.76	90.36
CDY40527	Canola	nucleus	43.96	88.14
Bra040741.1-P	Field mustard	nucleus	39.07	72.73
AT4G16610.1	Thale cress	nucleus	37.02	70.59
Bra012701.1-P	Field mustard	nucleus, plastid	38.3	69.63
KRH57408	Soybean	nucleus	21.85	32.08
KRH04135	Soybean	nucleus	20.57	30.42
GSMUA_Achr2P18480_001	Banana	nucleus	17.99	28.57
KRH28087	Soybean	nucleus	20.82	28.12
VIT_00s0229g00050.t01	Wine grape	nucleus	23.14	27.86
GSMUA_Achr4P26920_001	Banana	mitochondrion	19.54	27.84
KRH77360	Soybean	nucleus	20.31	26.51
Bra003422.1-P	Field mustard	nucleus	19.28	25.25
Bra007545.1-P	Field mustard	nucleus	19.28	25.25
HORVU2Hr1G097440.1	Barley	mitochondrion	14.14	25.23
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	14.91	25.22
PGSC0003DMT400012154	Potato	nucleus	19.28	25.17
GSMUA_Achr5P15450_001	Banana	mitochondrion	17.74	24.91
TraesCS6D01G230800.1	Wheat	nucleus	20.05	24.76
PGSC0003DMT400030986	Potato	nucleus	19.28	24.59
Bra040325.1-P	Field mustard	nucleus	17.74	24.56
Solyc06g060740.1.1	Tomato	nucleus	19.28	24.51
HORVU6Hr1G063280.1	Barley	mitochondrion, nucleus, plastid	19.54	24.28
HORVU0Hr1G030680.1	Barley	nucleus	19.54	24.28
TraesCS6B01G276100.1	Wheat	nucleus	19.02	23.57
TraesCS6A01G248700.1	Wheat	nucleus	19.02	23.57
Solyc08g078590.1.1	Tomato	nucleus	16.97	23.49
GSMUA_Achr4P05560_001	Banana	nucleus	13.88	23.48
GSMUA_Achr5P13370_001	Banana	mitochondrion, nucleus	17.48	22.97
GSMUA_Achr1P01550_001	Banana	nucleus	17.22	22.79
GSMUA_Achr1P24150_001	Banana	mitochondrion	15.42	22.56
HORVU2Hr1G097410.1	Barley	nucleus	16.97	22.45
GSMUA_AchrUn_...	Banana	nucleus	13.11	22.37
TraesCS2A01G413100.1	Wheat	nucleus	16.71	22.11
GSMUA_Achr4P12160_001	Banana	mitochondrion	11.05	22.05
OQU85696	Sorghum	mitochondrion	18.77	21.66
TraesCS1A01G211800.1	Wheat	nucleus	18.51	21.56
Zm00001d002731_P001	Maize	nucleus	16.97	21.5
Os10t0555300-01	Rice	mitochondrion, nucleus	19.79	21.45
Zm00001d017497_P001	Maize	mitochondrion	17.22	21.2
Bra033666.1-P	Field mustard	nucleus	10.03	21.08
TraesCS2D01G410300.1	Wheat	nucleus	16.45	20.85
TraesCS1B01G225500.1	Wheat	nucleus	18.25	20.82
TraesCS1D01G214900.1	Wheat	nucleus	18.25	20.82
Bra014483.1-P	Field mustard	nucleus	13.62	20.78
EES11238	Sorghum	mitochondrion	17.74	20.72
TraesCS2B01G431800.1	Wheat	nucleus	16.45	20.71
HORVU1Hr1G054170.1	Barley	nucleus	18.25	20.7
Bra000372.1-P	Field mustard	mitochondrion, nucleus	16.45	20.65
Zm00001d051371_P001	Maize	mitochondrion	17.74	20.35
Zm00001d047102_P001	Maize	nucleus	17.48	20.0
Os02t0659500-01	Rice	mitochondrion	17.48	19.94
Zm00001d029917_P001	Maize	nucleus	16.71	19.06
EER91950	Sorghum	mitochondrion, plastid	16.71	16.84
GSMUA_AchrUn_...	Banana	mitochondrion	15.68	16.53
Bra012914.1-P	Field mustard	nucleus	9.0	16.43
Bra009464.1-P	Field mustard	plastid	9.25	15.79
Bra012953.1-P	Field mustard	plastid	11.05	15.64
GSMUA_Achr7P04600_001	Banana	nucleus	14.4	15.51
Bra010922.1-P	Field mustard	nucleus	9.25	15.45
Bra022436.1-P	Field mustard	nucleus	10.28	14.98
Bra029985.1-P	Field mustard	nucleus	8.48	14.93
Bra032845.1-P	Field mustard	nucleus	8.74	14.85
Bra001752.1-P	Field mustard	nucleus	9.77	14.23
Bra038219.1-P	Field mustard	nucleus	9.25	13.64
Bra031834.1-P	Field mustard	nucleus	8.23	13.62
Bra037845.1-P	Field mustard	nucleus	7.46	12.55
Bra024448.1-P	Field mustard	nucleus	7.71	12.45
Bra029315.1-P	Field mustard	nucleus	5.66	9.44
Bra018817.1-P	Field mustard	nucleus	7.71	8.04

Protein Annotations

EnsemblPlants:Bra038491.1	EnsemblPlants:Bra038491.1-P	EnsemblPlantsGene:Bra038491	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF185	PFAM:PF13912	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	UniParc:UPI00025444FA	UniProt:M4FBM5	MapMan:35.2	:

Description

AT4G16610 (E=5e-055) | zinc finger (C2H2 type) family protein

Coordinates

chrA01:-:10898771..10902435

Molecular Weight (calculated)

43710.0 Da

IEP (calculated)

10.392

GRAVY (calculated)

-0.891

Length

389 amino acids

Sequence
(BLAST)

001: MQKHKCKLCS KSFCNGRALG GHMKSHLVSS HRPTRKKLSD SVYSSSSSSE GKTLVYGLRE NPRKSFRVFS QDPESSIVYN SDTETEPESV DPVRKRSRTA
101: VSKNKKKKKK KKRSKKMTRY ISSPEPASSV SDGSQEHDLA MCLMMLSRDS RKIELVKKPV LEAEETKPEK RQFPELRRRG VPMIGHHLLL SRLWKLSFVV
201: ELVFFVASFT SDHNDMEENV TKRAKELTRS LSFTDLSDHE PVTVAGDNQI IGALNDMEIE DNQDDGMMEC EGMDEDLLGI DLKDMEEREA LQVVSKATSG
301: HVTSRTVTTV LKNSRQGTKV NVPLGLQNKK FEILRRGSPR KPSSSSQGAH TARDSTRSRK HSQSSKKQRG SASKGDGLMG SKNSSQDYR

Best Arabidopsis Sequence Match ( AT4G16610.1 )
(BLAST)

001: MQNKHKCKLC SKSFCNGRAL GGHMKSHLVS SQSSARKKLG DSVYSSSSSS SDGKALAYGL RENPRKSFRV FNPDPESSTI YNSETETEPE SGDPVKKRVR
101: GDVSKKKKKK AKSKRVFENS KKQKTIHESP EPASSVSDGS PEQDLAMCLM MLSRDSRELE IKLKKPEEER KPEKRHFPEL RRCMIDLNLP PPQEAEAVTV
201: VSAI

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:O23504]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.