Factsheet for Bra012914.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02102	Canola	nucleus	73.71	99.37
CDY23027	Canola	nucleus	72.77	91.18
Bra029985.1-P	Field mustard	nucleus	84.98	81.9
AT3G49930.1	Thale cress	nucleus	80.75	80.0
Bra037845.1-P	Field mustard	nucleus	61.5	56.71
Bra031834.1-P	Field mustard	nucleus	62.44	56.6
Bra024448.1-P	Field mustard	nucleus	60.56	53.53
Bra033666.1-P	Field mustard	nucleus	38.97	44.86
VIT_07s0129g00240.t01	Wine grape	nucleus	46.01	42.06
TraesCS4A01G236000.1	Wheat	nucleus	38.97	40.69
TraesCS4D01G077900.1	Wheat	nucleus	40.85	39.73
Bra010922.1-P	Field mustard	nucleus	43.19	39.48
Bra032845.1-P	Field mustard	nucleus	41.78	38.86
HORVU4Hr1G013460.1	Barley	nucleus	39.91	38.81
TraesCS4B01G079000.1	Wheat	nucleus	39.91	38.64
Os03t0610400-01	Rice	nucleus	40.38	36.13
TraesCS5B01G076400.1	Wheat	nucleus	39.91	35.56
Bra009464.1-P	Field mustard	plastid	37.56	35.09
TraesCS5A01G070600.1	Wheat	nucleus	39.44	34.85
TraesCS5D01G082700.1	Wheat	nucleus	38.5	34.45
Bra022436.1-P	Field mustard	nucleus	42.72	34.08
Bra001752.1-P	Field mustard	nucleus	42.25	33.71
GSMUA_Achr5P08730_001	Banana	nucleus	38.97	33.6
Bra038219.1-P	Field mustard	nucleus	41.31	33.33
Os12t0583700-00	Rice	nucleus	37.56	32.39
EES16240	Sorghum	nucleus	37.09	27.24
Zm00001d030858_P001	Maize	nucleus	35.21	27.08
GSMUA_Achr6P24730_001	Banana	nucleus	34.27	26.45
Bra040325.1-P	Field mustard	nucleus	30.52	23.13
Bra003422.1-P	Field mustard	nucleus	31.46	22.56
Bra014483.1-P	Field mustard	nucleus	26.76	22.35
Bra007545.1-P	Field mustard	nucleus	30.52	21.89
Bra000372.1-P	Field mustard	mitochondrion, nucleus	30.99	21.29
Bra012953.1-P	Field mustard	plastid	24.41	18.91
Bra029315.1-P	Field mustard	nucleus	20.19	18.45
Bra018817.1-P	Field mustard	nucleus	30.52	17.43
Bra012701.1-P	Field mustard	nucleus, plastid	15.49	15.42
Bra040741.1-P	Field mustard	nucleus	15.02	15.31
Bra038491.1-P	Field mustard	nucleus	16.43	9.0

Protein Annotations

EnsemblPlants:Bra012914.1	EnsemblPlants:Bra012914.1-P	EnsemblPlantsGene:Bra012914	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF263	PFAM:PF13912
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00025405F2
UniProt:M4D8V4	MapMan:15.5.15	:	:	:	:

Description

AT3G49930 (E=4e-066) | zinc finger (C2H2 type) family protein

Coordinates

chrA03:+:21533367..21534008

Molecular Weight (calculated)

23039.3 Da

IEP (calculated)

7.634

GRAVY (calculated)

-1.017

Length

213 amino acids

Sequence
(BLAST)

001: MALDTLNSPT STTAPPPFLT EPENLESWTK RKRTKRHRTV DQSHPPSEEE YLAICLLMLA RGSSSSSSND GNDHHSPPAP PSDHHHRDYK CSVCGKSFPS
101: YQALGGHKTS HRKPVSNTNC QDTNNSGNGS VTNKGNISNG LIGQSGKTHK CSICFKSFPS GQALGGHKRC HYDGGNGNGS NNHGFDLNLP ADHDETLVKS
201: QLSGEELKSE SDY

Best Arabidopsis Sequence Match ( AT3G49930.1 )
(BLAST)

001: MALDTLNSPT STTTTTAPPP FLRCLDETEP ENLESWTKRK RTKRHRIDQP NPPPSEEEYL ALCLLMLARG SSDHHSPPSD HHSLSPLSDH QKDYKCSVCG
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL

Arabidopsis Description

At3g49930 [Source:UniProtKB/TrEMBL;Acc:Q9SN24]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.