Factsheet for Bra012953.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02142	Canola	nucleus	97.09	98.16
CDY23066	Canola	plastid	95.64	95.64
Bra029315.1-P	Field mustard	nucleus	53.09	62.66
AT5G61470.1	Thale cress	nucleus	52.73	47.7
Bra033666.1-P	Field mustard	nucleus	17.82	26.49
Bra040325.1-P	Field mustard	nucleus	25.45	24.91
Bra012914.1-P	Field mustard	nucleus	18.91	24.41
Bra003422.1-P	Field mustard	nucleus	26.18	24.24
Bra000372.1-P	Field mustard	mitochondrion, nucleus	27.27	24.19
Bra007545.1-P	Field mustard	nucleus	25.82	23.91
Bra029985.1-P	Field mustard	nucleus	18.91	23.53
Bra037845.1-P	Field mustard	nucleus	18.18	21.64
Bra031834.1-P	Field mustard	nucleus	18.18	21.28
Bra024448.1-P	Field mustard	nucleus	18.55	21.16
Bra010922.1-P	Field mustard	nucleus	17.82	21.03
Bra032845.1-P	Field mustard	nucleus	17.45	20.96
Zm00001d029584_P001	Maize	nucleus	13.45	20.79
Bra009464.1-P	Field mustard	plastid	17.09	20.61
TraesCS7D01G161800.1	Wheat	nucleus	15.27	20.19
TraesCS7B01G065700.1	Wheat	nucleus	15.64	20.19
Zm00001d047330_P001	Maize	nucleus	13.82	20.11
Bra014483.1-P	Field mustard	nucleus	18.55	20.0
TraesCS7A01G160700.2	Wheat	nucleus	15.64	20.0
Zm00001d047334_P001	Maize	nucleus	15.64	19.11
Bra038219.1-P	Field mustard	nucleus	18.18	18.94
TraesCS2A01G090200.1	Wheat	nucleus	13.45	18.88
EER92089	Sorghum	nucleus	14.18	18.84
EER97472	Sorghum	nucleus	13.45	18.78
Zm00001d022002_P001	Maize	nucleus	13.45	18.69
Bra040741.1-P	Field mustard	nucleus	14.18	18.66
EER92088	Sorghum	nucleus	16.0	18.64
TraesCS2B01G105900.1	Wheat	nucleus	13.45	18.5
Zm00001d029586_P001	Maize	nucleus	15.64	18.45
TraesCS2D01G088100.1	Wheat	nucleus	13.09	18.37
Bra001752.1-P	Field mustard	nucleus	17.82	18.35
Bra022436.1-P	Field mustard	nucleus	17.82	18.35
Zm00001d029587_P001	Maize	nucleus	16.36	18.15
Zm00001d029589_P001	Maize	nucleus	13.82	18.1
Os11t0340477-01	Rice	nucleus	13.09	18.0
Os03t0437100-01	Rice	nucleus	13.09	18.0
Os07t0590100-01	Rice	cytosol, nucleus	12.73	17.33
Bra012701.1-P	Field mustard	nucleus, plastid	13.45	17.29
Os03t0437200-01	Rice	cytosol, nucleus, vacuole	13.45	16.82
EER92087	Sorghum	nucleus	15.64	16.8
HORVU2Hr1G014870.1	Barley	nucleus	13.09	16.67
Bra018817.1-P	Field mustard	nucleus	17.82	13.14
HORVU3Hr1G028100.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	8.73	12.06
Bra038491.1-P	Field mustard	nucleus	15.64	11.05

Protein Annotations

EnsemblPlants:Bra012953.1	EnsemblPlants:Bra012953.1-P	EnsemblPlantsGene:Bra012953	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF322
PFAM:PF13912	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI000254057A	UniProt:M4D8Z3	MapMan:15.5.15	:	:	:

Description

AT5G61470 (E=9e-031) | zinc finger (C2H2 type) family protein

Coordinates

chrA03:+:21350867..21351694

Molecular Weight (calculated)

30856.4 Da

IEP (calculated)

7.433

GRAVY (calculated)

-0.782

Length

275 amino acids

Sequence
(BLAST)

001: MMYSLLNETR NCQVCKKSFP NGRALGGHMR SHTRKISASN AESATGSTVP TLKTLTKLAA NIRPNETVLM RSVHTSEVGP EPDLKRGEGG QQIKGKRKFV
101: VDVDECPSSL TAVEECALCL VAMSKGQRPE NSQNWNAIDR LLATPNEKEE YTRKSIDIDS DDDDREDKDK YVASNVRVLT EDIDENEDED DEDETYLVEK
201: ENQCKKKFTC DICGKVLHSY QALGGHRTSH RTKRLKICDK NGQAMVRHYK CEICGRVFGS GQALGGHKKV HYVFL

Best Arabidopsis Sequence Match ( AT5G61470.1 )
(BLAST)

001: MYSLLKKTKI CQVCKKSFSN GKALGGHMRA HTLKFFPGSS SSTGSITPSL RSCNNLGASF RRPNETVLAR FVHTSEVVGG PKPDLNKEAE QRTTVKKKIV
101: VDLEEENSIE SESDITIEES ALCLLQMKDD NMSEYLQNLK SIDSLVSTRK RKDTENYIEI DSDENHEDSD DEYVVEDEDE DNEDDDVKSL TSDVENLIGD
201: SDEDDDDYGD ENAYYGGKRK RGKKQSKYTC DTCGKVLRSY QALGGHRTSH KYKRLKISDK NYFGEDGPIV RRQYECQICN RMFASGQALG GHKKIHYMFL
301: APAK

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9FII6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.