Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G088100.1 | Wheat | nucleus | 94.5 | 96.43 |
| TraesCS2A01G090200.1 | Wheat | nucleus | 92.0 | 93.88 |
| HORVU2Hr1G014870.1 | Barley | nucleus | 87.0 | 80.56 |
| Os11t0340477-01 | Rice | nucleus | 66.5 | 66.5 |
| Os03t0437100-01 | Rice | nucleus | 66.5 | 66.5 |
| Zm00001d029584_P001 | Maize | nucleus | 58.5 | 65.73 |
| Zm00001d047330_P001 | Maize | nucleus | 61.0 | 64.55 |
| HORVU3Hr1G028100.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 63.0 | 63.32 |
| EER92089 | Sorghum | nucleus | 64.0 | 61.84 |
| TraesCS7B01G065700.1 | Wheat | nucleus | 47.5 | 44.6 |
| TraesCS4B01G079000.1 | Wheat | nucleus | 37.5 | 34.09 |
| TraesCS5B01G076400.1 | Wheat | nucleus | 35.5 | 29.71 |
| TraesCS2B01G212900.1 | Wheat | nucleus | 29.5 | 26.82 |
| TraesCS5B01G406000.1 | Wheat | nucleus | 34.0 | 26.05 |
| CDY70162 | Canola | nucleus | 19.5 | 18.22 |
| TraesCS2B01G431800.1 | Wheat | nucleus | 25.0 | 16.18 |
| Bra029315.1-P | Field mustard | nucleus | 18.5 | 15.88 |
| CDY42873 | Canola | nucleus | 19.5 | 15.66 |
| TraesCS6B01G276100.1 | Wheat | nucleus | 24.0 | 15.29 |
| Bra012953.1-P | Field mustard | plastid | 18.5 | 13.45 |
| CDY02142 | Canola | nucleus | 18.0 | 13.24 |
| CDY23066 | Canola | plastid | 18.0 | 13.09 |
| TraesCS1B01G225500.1 | Wheat | nucleus | 21.0 | 12.32 |
| AT5G61470.1 | Thale cress | nucleus | 18.0 | 11.84 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G105900.1 | EnsemblPlantsGene:TraesCS2B01G105900 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF178 | PFAM:PF13912 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 |
Description
No Description!
Coordinates
chr2B:-:66717879..66718481
Molecular Weight (calculated)
21194.3 Da
IEP (calculated)
9.130
GRAVY (calculated)
-0.206
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMMKMTHDD YVHLCLMALA SVATGGDQAQ AAKGQWLQTV TAAAPAASEL RFRCSVCGKA FPSHQALGGH KASHRKRAAL VLPLQSVSPA EETVASSTSS
101: GVGGHRCSVC HRSFATGQAL GGHKRCHYWD GLSVSLTASA SRSGSGSSVR DFDLNLTPVP EKAAGGMRRW GEEEEVQSPL PLKKRRLSSP SLELNLILLD
101: GVGGHRCSVC HRSFATGQAL GGHKRCHYWD GLSVSLTASA SRSGSGSSVR DFDLNLTPVP EKAAGGMRRW GEEEEVQSPL PLKKRRLSSP SLELNLILLD
001: MALETLTSPR LSSPMPTLFQ DSALGFHGSK GKRSKRSRSE FDRQSLTEDE YIALCLMLLA RDGDRNRDLD LPSSSSSPPL LPPLPTPIYK CSVCDKAFSS
101: YQALGGHKAS HRKSFSLTQS AGGDELSTSS AITTSGISGG GGGSVKSHVC SICHKSFATG QALGGHKRCH YEGKNGGGVS SSVSNSEDVG STSHVSSGHR
201: GFDLNIPPIP EFSMVNGDEE VMSPMPAKKL RFDFPEKP
101: YQALGGHKAS HRKSFSLTQS AGGDELSTSS AITTSGISGG GGGSVKSHVC SICHKSFATG QALGGHKRCH YEGKNGGGVS SSVSNSEDVG STSHVSSGHR
201: GFDLNIPPIP EFSMVNGDEE VMSPMPAKKL RFDFPEKP
Arabidopsis Description
ZAT6Zinc finger protein ZAT6 [Source:UniProtKB/Swiss-Prot;Acc:O22533]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.